]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
9 years agoFix definition of syev method. Correct ifdef guard. 396/head
Martin Kronbichler [Thu, 1 Jan 2015 11:48:38 +0000 (12:48 +0100)]
Fix definition of syev method. Correct ifdef guard.

This avoids compiler errors with clang 3.5.

9 years agoMerge pull request #385 from tamiko/guard_have_macros
Wolfgang Bangerth [Wed, 31 Dec 2014 15:19:35 +0000 (09:19 -0600)]
Merge pull request #385 from tamiko/guard_have_macros

Replace HAVE_* by DEAL_II_HAVE_*

9 years agoMerge pull request #394 from tjhei/simplify_cast
Timo Heister [Wed, 31 Dec 2014 14:30:32 +0000 (06:30 -0800)]
Merge pull request #394 from tjhei/simplify_cast

simplify cast

9 years agosimplify cast 394/head
Timo Heister [Wed, 31 Dec 2014 13:50:12 +0000 (08:50 -0500)]
simplify cast

9 years agoMerge pull request #390 from bangerth/fix-missing-instantiations-2
Matthias Maier [Wed, 31 Dec 2014 14:20:38 +0000 (15:20 +0100)]
Merge pull request #390 from bangerth/fix-missing-instantiations-2

Add changes.h entry

9 years agoMerge pull request #395 from tjhei/wrap_comments_improvements
Matthias Maier [Wed, 31 Dec 2014 14:20:01 +0000 (15:20 +0100)]
Merge pull request #395 from tjhei/wrap_comments_improvements

wrapcomments paren handling

9 years agowrapcomments paren handling 395/head
Timo Heister [Wed, 31 Dec 2014 14:03:56 +0000 (09:03 -0500)]
wrapcomments paren handling

Correctly handle an opening parenthesis directly in front of @ref and
fix the one place we use it.

9 years agoFix missing instantiations. 390/head
Wolfgang Bangerth [Tue, 30 Dec 2014 00:32:48 +0000 (18:32 -0600)]
Fix missing instantiations.

9 years agofix a comment 385/head
Matthias Maier [Tue, 30 Dec 2014 00:32:03 +0000 (01:32 +0100)]
fix a comment

9 years agoAdd an entry to changes.h
Matthias Maier [Mon, 29 Dec 2014 19:44:48 +0000 (20:44 +0100)]
Add an entry to changes.h

9 years agoGuard HAVE_* variables and definitions with DEALI_II prefix
Matthias Maier [Mon, 29 Dec 2014 18:35:58 +0000 (19:35 +0100)]
Guard HAVE_* variables and definitions with DEALI_II prefix

This commits renames every HAVE_* definitions to DEAL_II_HAVE_*. This is
done to avoid name clashes with external projects also exporting HAVE_*
definitions.

9 years agoMerge pull request #388 from bangerth/fix-missing-instantiations
Matthias Maier [Tue, 30 Dec 2014 00:38:47 +0000 (01:38 +0100)]
Merge pull request #388 from bangerth/fix-missing-instantiations

Fix missing instantiations.

9 years agoFix missing instantiations. 388/head
Wolfgang Bangerth [Tue, 30 Dec 2014 00:32:48 +0000 (18:32 -0600)]
Fix missing instantiations.

9 years agoMerge pull request #386 from tamiko/cmake_fixes
Wolfgang Bangerth [Tue, 30 Dec 2014 00:28:07 +0000 (18:28 -0600)]
Merge pull request #386 from tamiko/cmake_fixes

Small cmake configuration and documentation fixes

9 years agoadd changes.h entry 386/head
Matthias Maier [Mon, 29 Dec 2014 17:16:25 +0000 (18:16 +0100)]
add changes.h entry

9 years agoUpdate documentation of DEAL_II_WITH_* lists, and testsuite configuration
Matthias Maier [Mon, 29 Dec 2014 12:05:50 +0000 (13:05 +0100)]
Update documentation of DEAL_II_WITH_* lists, and testsuite configuration

9 years agoremove obsolete functionparser definitions
Matthias Maier [Mon, 29 Dec 2014 12:01:29 +0000 (13:01 +0100)]
remove obsolete functionparser definitions

9 years agoAdd an additional hint for opencascade
Matthias Maier [Mon, 29 Dec 2014 11:59:34 +0000 (12:59 +0100)]
Add an additional hint for opencascade

9 years agoMerge pull request #383 from tamiko/fix_error_message
Wolfgang Bangerth [Sun, 28 Dec 2014 03:05:21 +0000 (21:05 -0600)]
Merge pull request #383 from tamiko/fix_error_message

step-34: Also adjust error message

9 years agostep-34: Also adjust error message 383/head
Matthias Maier [Sun, 28 Dec 2014 01:39:37 +0000 (02:39 +0100)]
step-34: Also adjust error message

9 years agoMerge pull request #382 from tamiko/restructure_file
Luca Heltai [Fri, 26 Dec 2014 23:36:49 +0000 (00:36 +0100)]
Merge pull request #382 from tamiko/restructure_file

CMake: Restructure configuration file

9 years agoCMake: Restructure configuration file 382/head
Matthias Maier [Fri, 26 Dec 2014 23:31:03 +0000 (00:31 +0100)]
CMake: Restructure configuration file

9 years agoMerge pull request #381 from tjhei/wrapcomments_part_two
Luca Heltai [Fri, 26 Dec 2014 18:00:20 +0000 (19:00 +0100)]
Merge pull request #381 from tjhei/wrapcomments_part_two

wrapcomments.py @ref handling

9 years agowrapcomments on all files 381/head
Timo Heister [Fri, 26 Dec 2014 16:37:34 +0000 (11:37 -0500)]
wrapcomments on all files

9 years agomanually reformat some files
Timo Heister [Fri, 26 Dec 2014 10:38:25 +0000 (05:38 -0500)]
manually reformat some files

9 years agofix typo in step-52
Timo Heister [Fri, 26 Dec 2014 11:13:25 +0000 (06:13 -0500)]
fix typo in step-52

9 years agobetter @ref handling
Timo Heister [Fri, 26 Dec 2014 10:27:59 +0000 (05:27 -0500)]
better @ref handling

Correctly handle @ref in the wrapcomments.py script. We need to keep the
description in quotes in one line and move everything else to the next line
except immediate punctuation.

9 years agoMerge pull request #378 from luca-heltai/another-fix-to-cpack
Matthias Maier [Thu, 25 Dec 2014 21:10:21 +0000 (22:10 +0100)]
Merge pull request #378 from luca-heltai/another-fix-to-cpack

Now also cached variables for cpack config have CPACK prefix.

9 years agoMerge pull request #379 from tjhei/doxygen_wrapcomments_fixes
Matthias Maier [Thu, 25 Dec 2014 21:09:52 +0000 (22:09 +0100)]
Merge pull request #379 from tjhei/doxygen_wrapcomments_fixes

Doxygen wrapcomments fixes

9 years agofixup files 379/head
Timo Heister [Thu, 25 Dec 2014 20:58:39 +0000 (15:58 -0500)]
fixup files

9 years agomore fixup
Timo Heister [Thu, 25 Dec 2014 20:28:50 +0000 (15:28 -0500)]
more fixup

9 years agoformat everything
Timo Heister [Thu, 25 Dec 2014 20:27:17 +0000 (15:27 -0500)]
format everything

9 years agofix warpcomments.py
Timo Heister [Thu, 25 Dec 2014 20:12:39 +0000 (15:12 -0500)]
fix warpcomments.py

9 years agofix up more files
Timo Heister [Thu, 25 Dec 2014 20:10:23 +0000 (15:10 -0500)]
fix up more files

9 years agofix more files
Timo Heister [Thu, 25 Dec 2014 20:06:39 +0000 (15:06 -0500)]
fix more files

9 years agoforce @ref in separate line
Timo Heister [Thu, 25 Dec 2014 20:00:21 +0000 (15:00 -0500)]
force @ref in separate line

9 years agoput @ref in separate line
Timo Heister [Thu, 25 Dec 2014 20:00:11 +0000 (15:00 -0500)]
put @ref in separate line

9 years agoremove stray comment
Timo Heister [Wed, 24 Dec 2014 14:56:22 +0000 (09:56 -0500)]
remove stray comment

9 years agoupdate wrapcomments.py
Timo Heister [Wed, 24 Dec 2014 14:25:02 +0000 (09:25 -0500)]
update wrapcomments.py

now handle @image tags correctly

9 years agofix doxygen formatting
Timo Heister [Wed, 24 Dec 2014 14:24:05 +0000 (09:24 -0500)]
fix doxygen formatting

reformat a couple of places in the doxygen comments manually (broken
@image lines etc.). This is mostly to make wrapcomments.py happy.

9 years agoNow also cached variables have CPACK prefix. 378/head
Luca Heltai [Thu, 25 Dec 2014 16:29:35 +0000 (17:29 +0100)]
Now also cached variables have CPACK prefix.

9 years agoMerge pull request #377 from tjhei/solution_transfer_msg
Matthias Maier [Wed, 24 Dec 2014 15:11:51 +0000 (16:11 +0100)]
Merge pull request #377 from tjhei/solution_transfer_msg

improve SolutionTransfer exception

9 years agoMerge pull request #376 from tjhei/export_ignores
Matthias Maier [Wed, 24 Dec 2014 15:11:00 +0000 (16:11 +0100)]
Merge pull request #376 from tjhei/export_ignores

add .gitattributes

9 years agoimprove SolutionTransfer exception 377/head
Timo Heister [Wed, 24 Dec 2014 13:29:27 +0000 (08:29 -0500)]
improve SolutionTransfer exception

parallel::distributed::SolutionTransfer only works with parallel::distributed::Triangulation. This is now checked in the constructor.

9 years agoadd .gitattributes 376/head
Timo Heister [Wed, 24 Dec 2014 12:39:05 +0000 (07:39 -0500)]
add .gitattributes

we ignore the testsuite and some other files when creating a tarball
with git archive. This is also used by github for 'releases'.

9 years agoMerge pull request #374 from tamiko/update_normalize_script
Luca Heltai [Wed, 24 Dec 2014 09:33:05 +0000 (10:33 +0100)]
Merge pull request #374 from tamiko/update_normalize_script

update normalize script

9 years agoupdate normalize script 374/head
Matthias Maier [Wed, 24 Dec 2014 08:15:10 +0000 (09:15 +0100)]
update normalize script

9 years agoMerge pull request #372 from tamiko/fix_step34
Matthias Maier [Tue, 23 Dec 2014 23:49:00 +0000 (00:49 +0100)]
Merge pull request #372 from tamiko/fix_step34

fix configuration for step-34

9 years agofix configuration for step-34 372/head
Matthias Maier [Tue, 23 Dec 2014 23:13:00 +0000 (00:13 +0100)]
fix configuration for step-34

9 years agoMerge pull request #370 from tamiko/fix_opencascade
Luca Heltai [Tue, 23 Dec 2014 21:59:37 +0000 (22:59 +0100)]
Merge pull request #370 from tamiko/fix_opencascade

fix compilation against opencascade on linux targets

9 years agofix compilation against opencascade on linux targets 370/head
Matthias Maier [Tue, 23 Dec 2014 20:39:09 +0000 (21:39 +0100)]
fix compilation against opencascade on linux targets

9 years agoMerge pull request #367 from tamiko/fix_documentation
Luca Heltai [Tue, 23 Dec 2014 13:18:11 +0000 (14:18 +0100)]
Merge pull request #367 from tamiko/fix_documentation

Update documentation

9 years agoMerge pull request #368 from tjhei/missing_image_step_49
Matthias Maier [Tue, 23 Dec 2014 13:15:45 +0000 (14:15 +0100)]
Merge pull request #368 from tjhei/missing_image_step_49

fix link to step-49 gmsh_picture.png

9 years agofix link to step-49 gmsh_picture.png 368/head
Timo Heister [Tue, 23 Dec 2014 13:11:03 +0000 (08:11 -0500)]
fix link to step-49 gmsh_picture.png

9 years agoMerge pull request #366 from kronbichler/master
Matthias Maier [Tue, 23 Dec 2014 10:51:17 +0000 (11:51 +0100)]
Merge pull request #366 from kronbichler/master

Fix undefined symbols on Mac.

9 years agoput license.html directly on the homepage 367/head
Matthias Maier [Tue, 23 Dec 2014 10:41:01 +0000 (11:41 +0100)]
put license.html directly on the homepage

9 years agoclenaup toc, remove stale information
Matthias Maier [Tue, 23 Dec 2014 10:29:32 +0000 (11:29 +0100)]
clenaup toc, remove stale information

9 years agoFix undefined symbols on Mac. 366/head
Martin Kronbichler [Tue, 23 Dec 2014 10:33:08 +0000 (11:33 +0100)]
Fix undefined symbols on Mac.

Deactivate ShapeInfo::reinit on MSVC target as proposed in c2021e2.

9 years agoDocumentation: remove stale html files
Matthias Maier [Mon, 21 Jul 2014 16:56:23 +0000 (18:56 +0200)]
Documentation: remove stale html files

Remove news.html and publications/indexl.html stubs - they are not
referenced any more.

9 years agoDocumentation: Remove all references to external resources
Matthias Maier [Mon, 21 Jul 2014 16:26:16 +0000 (18:26 +0200)]
Documentation: Remove all references to external resources

We already link to this  external resources on the homepage - there is no
point in doing it here (nobody will find it and it has the bad tendency of
being out of date).

9 years agoDocumentation: Remove svn.html from offline documentation
Matthias Maier [Mon, 21 Jul 2014 16:25:25 +0000 (18:25 +0200)]
Documentation: Remove svn.html from offline documentation

The new development guidelines for git should be prominently on the
homepage, not buried in the offlinedocumentaiton. So just remove the old
cruft.

9 years agoDocumentation: Remove bogus indentation.html file
Matthias Maier [Mon, 21 Jul 2014 16:15:47 +0000 (18:15 +0200)]
Documentation: Remove bogus indentation.html file

Well, we already have a detailed doxygen file about indentation. So it is
better to add the three relevant lines about astyle there and remove this
additional documentation page completely

9 years agoDocumentation: Remove references to svn
Matthias Maier [Mon, 21 Jul 2014 16:13:44 +0000 (18:13 +0200)]
Documentation: Remove references to svn

Remove references to svn's $Id$ in the headers and replace references to
the old subversion repository in various html files

9 years agoFix link in step-52
Matthias Maier [Tue, 23 Dec 2014 10:13:19 +0000 (11:13 +0100)]
Fix link in step-52

9 years agoMerge pull request #365 from tjhei/muparser_version_parsing
Matthias Maier [Mon, 22 Dec 2014 22:43:19 +0000 (23:43 +0100)]
Merge pull request #365 from tjhei/muparser_version_parsing

fix cmake muparser version string parsing

9 years agofix cmake muparser version string parsing 365/head
Timo Heister [Mon, 22 Dec 2014 21:38:08 +0000 (16:38 -0500)]
fix cmake muparser version string parsing

Turns out there are muparser versions out there that don't have a
subminor version which made our cmake code barf.

9 years agoMerge pull request #363 from luca-heltai/fixcpack
Matthias Maier [Fri, 19 Dec 2014 21:22:25 +0000 (22:22 +0100)]
Merge pull request #363 from luca-heltai/fixcpack

9 years agoFixed typo in setup_cpack.
Luca Heltai [Fri, 19 Dec 2014 13:30:47 +0000 (14:30 +0100)]
Fixed typo in setup_cpack.

9 years agoMerge pull request #361 from tamiko/improve_test_stability
Wolfgang Bangerth [Fri, 19 Dec 2014 11:57:33 +0000 (05:57 -0600)]
Merge pull request #361 from tamiko/improve_test_stability

Improve test stability

9 years agoport other tests to new macro 361/head
Matthias Maier [Fri, 19 Dec 2014 11:45:22 +0000 (12:45 +0100)]
port other tests to new macro

9 years agoTest umfpack/umfpack_04: Avoid printing exact number of iterations
Matthias Maier [Fri, 19 Dec 2014 11:33:45 +0000 (12:33 +0100)]
Test umfpack/umfpack_04: Avoid printing exact number of iterations

This commit introduces a new macro for tests to test an iterative solve to
convergence within a given number of iteration steps. Due to roundoff
errors the exact number doesn't have to be stable...

9 years agoTest bits/step-51: Improve output
Matthias Maier [Fri, 19 Dec 2014 11:05:36 +0000 (12:05 +0100)]
Test bits/step-51: Improve output

This allows numdiff to catch small roundoff errors.

9 years agoMerge pull request #360 from kronbichler/master
Wolfgang Bangerth [Fri, 19 Dec 2014 11:53:25 +0000 (05:53 -0600)]
Merge pull request #360 from kronbichler/master

Fix constructor of SchurMatrix for 64 bit indices.

9 years agoFix constructor of SchurMatrix for 64 bit indices. 360/head
Martin Kronbichler [Fri, 19 Dec 2014 08:27:02 +0000 (09:27 +0100)]
Fix constructor of SchurMatrix for 64 bit indices.

9 years agoMerge pull request #359 from kronbichler/master
Martin Kronbichler [Thu, 18 Dec 2014 21:38:04 +0000 (22:38 +0100)]
Merge pull request #359 from kronbichler/master

Fix bug in Trilinos SparseMatrix::add/copy_from

9 years agoFix bug in Trilinos SparseMatrix::add/copy_from 359/head
Martin Kronbichler [Thu, 18 Dec 2014 11:03:18 +0000 (12:03 +0100)]
Fix bug in Trilinos SparseMatrix::add/copy_from

We assume that the pointers to a Trilinos sparse matrix remain valid when a matrix
is copied from another one or added and the two matrices share the same sparsity pattern.
This is used in step-32. However, the fix introduced in 8d64256 could not ensure this
(while fixing a few other cases). The check if the two sparsity patterns point to the same
memory is not good (we can have the same sparsity pattern memory but different addresses).

Therefore, the add and copy_from methods need to be more careful to not set up a new
matrix structure when this is not necessary. In particular, the two methods now check
whether the column indices are the same in any case but without requiring calling
methods that change the memory layout.

9 years agoMerge pull request #357 from bangerth/fix-1d327fd1
Martin Kronbichler [Thu, 18 Dec 2014 08:41:14 +0000 (09:41 +0100)]
Merge pull request #357 from bangerth/fix-1d327fd1

Fix previous commit 1d327fd1dcd34023a3d5bb2c0ee7524593d44015.

9 years agoFix previous commit 1d327fd1dcd34023a3d5bb2c0ee7524593d44015. 357/head
Wolfgang Bangerth [Thu, 18 Dec 2014 08:37:02 +0000 (02:37 -0600)]
Fix previous commit 1d327fd1dcd34023a3d5bb2c0ee7524593d44015.

Commit 1d327fd1dcd34023a3d5bb2c0ee7524593d44015 moved a function from the .cc
file into the .h file and made it inline. Subtly, it also snuck in a small
change in the code: it changed
  if (!something)
   {
     ...
   }

  if (something)
into
  if (!something)
    {
      ...
    }
  else

The problem is that the first code block in rare circumstances changed the
value of the variable something. It is remarkable that this only triggered
in a single test in the testsuite -- an indication that the testsuite is
after all reasonably good at finding even obscure problems, but also an
indication that the anisotropic refinement stuff is not particularly well
tested.

9 years agoMerge pull request #350 from felgru/doxygen
Luca Heltai [Wed, 17 Dec 2014 16:11:36 +0000 (17:11 +0100)]
Merge pull request #350 from felgru/doxygen

Fix copyright years in doc/users/doxygen.html

9 years agoMerge pull request #352 from Rombur/fix_step_52
Luca Heltai [Wed, 17 Dec 2014 16:11:25 +0000 (17:11 +0100)]
Merge pull request #352 from Rombur/fix_step_52

Add instantations for class RungeKutta.

9 years agoAdd instantations for class RungeKutta. 352/head
Bruno Turcksin [Wed, 17 Dec 2014 15:52:01 +0000 (09:52 -0600)]
Add instantations for class RungeKutta.

9 years agoFix copyright years in doc/users/doxygen.html 350/head
Felix Gruber [Wed, 17 Dec 2014 09:33:12 +0000 (10:33 +0100)]
Fix copyright years in doc/users/doxygen.html

The year 2013 is already included in the range 2012 - 2014.

9 years agoMerge pull request #348 from tjhei/doxygen_fixes
Matthias Maier [Wed, 17 Dec 2014 07:56:52 +0000 (08:56 +0100)]
Merge pull request #348 from tjhei/doxygen_fixes

fix doxygen warnings

9 years agofix doxygen warnings 348/head
Timo Heister [Wed, 17 Dec 2014 07:49:13 +0000 (02:49 -0500)]
fix doxygen warnings

9 years agoMerge pull request #346 from tamiko/fix_arpack_test_v2
Martin Kronbichler [Wed, 17 Dec 2014 07:40:38 +0000 (08:40 +0100)]
Merge pull request #346 from tamiko/fix_arpack_test_v2

try to get the arpack test a bit more stable

9 years agoMerge pull request #347 from tamiko/update_normalize
Martin Kronbichler [Wed, 17 Dec 2014 07:39:57 +0000 (08:39 +0100)]
Merge pull request #347 from tamiko/update_normalize

Update normalize.pl to also substitute 8.2.pre version

9 years agoUpdate normalize.pl to also substitute 8.2.pre version 347/head
Matthias Maier [Wed, 17 Dec 2014 07:26:33 +0000 (08:26 +0100)]
Update normalize.pl to also substitute 8.2.pre version

9 years agotry to get the arpack test a bit more stable 346/head
Matthias Maier [Wed, 17 Dec 2014 00:58:28 +0000 (01:58 +0100)]
try to get the arpack test a bit more stable

Well, it turns out that depending on arpack version and CPU the result for
the first 5 eigenvalues differs. Try to make this a bit more stable by
computing 8 eigenvalues and only print the first 5.

9 years agoMerge pull request #345 from tamiko/update_examples
Bruno Turcksin [Tue, 16 Dec 2014 15:37:40 +0000 (09:37 -0600)]
Merge pull request #345 from tamiko/update_examples

Require the current version of deal.II.

9 years agoRequire the current version of deal.II. 345/head
Matthias Maier [Tue, 16 Dec 2014 15:12:05 +0000 (16:12 +0100)]
Require the current version of deal.II.

9 years agoupdate VERSION
Matthias Maier [Tue, 16 Dec 2014 15:09:43 +0000 (16:09 +0100)]
update VERSION

9 years agoMerge pull request #344 from tamiko/fix_some_tests
Martin Kronbichler [Tue, 16 Dec 2014 14:59:03 +0000 (15:59 +0100)]
Merge pull request #344 from tamiko/fix_some_tests

Fix a bunch of tests for simserv

9 years agoMerge pull request #343 from tamiko/changes_and_doc_update
Luca Heltai [Tue, 16 Dec 2014 09:45:04 +0000 (10:45 +0100)]
Merge pull request #343 from tamiko/changes_and_doc_update

Release steps 0e 1 1a

9 years agoMerge pull request #342 from tamiko/doxygen_fixups_and_reindent
Luca Heltai [Tue, 16 Dec 2014 09:44:24 +0000 (10:44 +0100)]
Merge pull request #342 from tamiko/doxygen_fixups_and_reindent

Release steps 0a 0b 0c 0d

9 years agonormalize parameter_handler_write_json.output for different boost versions 344/head
Matthias Maier [Tue, 16 Dec 2014 07:55:56 +0000 (08:55 +0100)]
normalize parameter_handler_write_json.output for different boost versions

9 years agoUpdate codim_01.mpirun=3.debug.output
Matthias Maier [Tue, 16 Dec 2014 01:48:46 +0000 (02:48 +0100)]
Update codim_01.mpirun=3.debug.output

9 years agosort output of arpack/step-36_ar
Matthias Maier [Tue, 16 Dec 2014 01:44:37 +0000 (02:44 +0100)]
sort output of arpack/step-36_ar

9 years agoupdate changes.h and tags for release 343/head
Matthias Maier [Mon, 15 Dec 2014 23:27:06 +0000 (00:27 +0100)]
update changes.h and tags for release

9 years agoUpdate blurbb for petsc and trilinos
Matthias Maier [Mon, 15 Dec 2014 23:36:45 +0000 (00:36 +0100)]
Update blurbb for petsc and trilinos

9 years agoBugfix: Fix typo so that our step-graph gets build again... 342/head
Matthias Maier [Mon, 15 Dec 2014 22:58:31 +0000 (23:58 +0100)]
Bugfix: Fix typo so that our step-graph gets build again...


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