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https://gitweb.dealii.org/ - dealii-svn.git/log
bangerth [Sun, 31 Mar 2013 21:56:39 +0000 (21:56 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29127
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bangerth [Sun, 31 Mar 2013 21:48:23 +0000 (21:48 +0000)]
Fix ParameterHandler in a different way.
git-svn-id: https://svn.dealii.org/trunk@29126
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bangerth [Sun, 31 Mar 2013 21:00:32 +0000 (21:00 +0000)]
Update documentation in a couple of places.
git-svn-id: https://svn.dealii.org/trunk@29125
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bangerth [Sun, 31 Mar 2013 20:47:57 +0000 (20:47 +0000)]
Update one point.
git-svn-id: https://svn.dealii.org/trunk@29124
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maier [Sun, 31 Mar 2013 20:38:01 +0000 (20:38 +0000)]
Fix a bug in ParameterHandler where parameter entries with "value" key where incorrectly treated as final nodes
git-svn-id: https://svn.dealii.org/trunk@29123
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maier [Sun, 31 Mar 2013 20:38:00 +0000 (20:38 +0000)]
Remove support for the obsolete MA27 and MA47 direct solvers of the HSL collection
git-svn-id: https://svn.dealii.org/trunk@29122
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maier [Sun, 31 Mar 2013 20:37:59 +0000 (20:37 +0000)]
CMake: Add a schortcut for configuration:
- WITH_* gets replaced by DEAL_II_WITH_*
- COMPONENT_* gets replaced by DEAL_II_COMPONENT_*
- Just providing a component name gets replaced by DEAL_II_COMPONENT_*
git-svn-id: https://svn.dealii.org/trunk@29121
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frohne [Sun, 31 Mar 2013 00:56:52 +0000 (00:56 +0000)]
fixed stopping rule in solve_newton ()
git-svn-id: https://svn.dealii.org/trunk@29120
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maier [Sat, 30 Mar 2013 17:20:14 +0000 (17:20 +0000)]
Add -ip to the optimized compiler flags for icc
git-svn-id: https://svn.dealii.org/trunk@29119
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maier [Sat, 30 Mar 2013 17:10:00 +0000 (17:10 +0000)]
CMake: Add crosscompilation support
git-svn-id: https://svn.dealii.org/trunk@29118
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young [Sat, 30 Mar 2013 14:14:22 +0000 (14:14 +0000)]
Kill off all instances of SLEPC_ARCH in configure. There is no such thing - it is always PETSC_ARCH.
git-svn-id: https://svn.dealii.org/trunk@29117
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maier [Sat, 30 Mar 2013 12:53:53 +0000 (12:53 +0000)]
Well, no. We don't support libnetcdf_c++4. Major porting required
git-svn-id: https://svn.dealii.org/trunk@29116
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young [Sat, 30 Mar 2013 12:45:01 +0000 (12:45 +0000)]
Corrections to readme and minor extension to petsc.html.
git-svn-id: https://svn.dealii.org/trunk@29115
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young [Sat, 30 Mar 2013 12:44:06 +0000 (12:44 +0000)]
Instructions on installing slepc.
git-svn-id: https://svn.dealii.org/trunk@29114
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maier [Sat, 30 Mar 2013 12:37:20 +0000 (12:37 +0000)]
CMake: Also find netcdf_c++4
git-svn-id: https://svn.dealii.org/trunk@29113
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maier [Sat, 30 Mar 2013 12:25:43 +0000 (12:25 +0000)]
CMake: Cleanup
git-svn-id: https://svn.dealii.org/trunk@29112
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heister [Fri, 29 Mar 2013 20:30:38 +0000 (20:30 +0000)]
fix step-42
git-svn-id: https://svn.dealii.org/trunk@29111
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maier [Fri, 29 Mar 2013 07:43:25 +0000 (07:43 +0000)]
CMake: Bugfix. Use relative paths in deal.IIConfig.cmake
git-svn-id: https://svn.dealii.org/trunk@29110
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maier [Fri, 29 Mar 2013 00:54:45 +0000 (00:54 +0000)]
CMake: Bugfixes
git-svn-id: https://svn.dealii.org/trunk@29109
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maier [Thu, 28 Mar 2013 23:41:37 +0000 (23:41 +0000)]
CMake: Several bugfixes for CPack
git-svn-id: https://svn.dealii.org/trunk@29108
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turcksin [Thu, 28 Mar 2013 22:05:19 +0000 (22:05 +0000)]
On this branch, results are slightly different because we store things as long long unsigned ints.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29107
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young [Thu, 28 Mar 2013 20:28:32 +0000 (20:28 +0000)]
Port over skeleton MathGL grid_out interface.
git-svn-id: https://svn.dealii.org/trunk@29106
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bangerth [Thu, 28 Mar 2013 19:54:31 +0000 (19:54 +0000)]
On this branch, results are slightly different because we store things as long long unsigned ints.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29105
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young [Thu, 28 Mar 2013 16:50:24 +0000 (16:50 +0000)]
Fix step-36: Use namespace dealii before calling dealii functions.
git-svn-id: https://svn.dealii.org/trunk@29104
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maier [Thu, 28 Mar 2013 16:30:27 +0000 (16:30 +0000)]
Rephrase a forgotten definition of "deal.II authors" in license.html to match readme.html
git-svn-id: https://svn.dealii.org/trunk@29103
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maier [Thu, 28 Mar 2013 16:19:05 +0000 (16:19 +0000)]
Update href
git-svn-id: https://svn.dealii.org/trunk@29102
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maier [Thu, 28 Mar 2013 16:17:07 +0000 (16:17 +0000)]
Update documentation
git-svn-id: https://svn.dealii.org/trunk@29101
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maier [Thu, 28 Mar 2013 15:48:29 +0000 (15:48 +0000)]
CMake: Add support for CPack
git-svn-id: https://svn.dealii.org/trunk@29100
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maier [Thu, 28 Mar 2013 10:17:03 +0000 (10:17 +0000)]
CMake: Cleanup
git-svn-id: https://svn.dealii.org/trunk@29099
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bangerth [Thu, 28 Mar 2013 01:50:23 +0000 (01:50 +0000)]
Test appears to work now. No need to run it with 10 processors either.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29098
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bangerth [Thu, 28 Mar 2013 01:39:39 +0000 (01:39 +0000)]
Make work.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29097
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maier [Wed, 27 Mar 2013 22:56:35 +0000 (22:56 +0000)]
CMake: Actually include the new OBJECT targets
git-svn-id: https://svn.dealii.org/trunk@29096
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maier [Wed, 27 Mar 2013 22:54:30 +0000 (22:54 +0000)]
Merge branch branch_cmake into Mainline
This merge finalizes support for IDEs.
git-svn-id: https://svn.dealii.org/trunk@29095
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maier [Wed, 27 Mar 2013 22:52:32 +0000 (22:52 +0000)]
build_test: Only run a minimal set of steps in debug configuration
git-svn-id: https://svn.dealii.org/branches/branch_cmake@29094
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bangerth [Wed, 27 Mar 2013 22:16:10 +0000 (22:16 +0000)]
Ack, do it right this time :-(
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29093
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bangerth [Wed, 27 Mar 2013 22:12:06 +0000 (22:12 +0000)]
Fix merge conflict.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29092
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turcksin [Wed, 27 Mar 2013 21:58:09 +0000 (21:58 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29091
0785d39b -7218-0410-832d-
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maier [Wed, 27 Mar 2013 21:53:42 +0000 (21:53 +0000)]
build_test: Bugfix
git-svn-id: https://svn.dealii.org/branches/branch_cmake@29090
0785d39b -7218-0410-832d-
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maier [Wed, 27 Mar 2013 21:50:48 +0000 (21:50 +0000)]
build_test: Bugfix
git-svn-id: https://svn.dealii.org/branches/branch_cmake@29089
0785d39b -7218-0410-832d-
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bangerth [Wed, 27 Mar 2013 20:59:12 +0000 (20:59 +0000)]
Update test -- the issue is fixed in Trilinos after 11.0.3.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29088
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bangerth [Wed, 27 Mar 2013 20:07:09 +0000 (20:07 +0000)]
Add documentation to PreconditionAMG::AdditionalData.
git-svn-id: https://svn.dealii.org/trunk@29087
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maier [Wed, 27 Mar 2013 19:41:14 +0000 (19:41 +0000)]
Merge branch 'trunk' into branch_cmake
git-svn-id: https://svn.dealii.org/branches/branch_cmake@29086
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maier [Wed, 27 Mar 2013 19:40:53 +0000 (19:40 +0000)]
Bugfix in build_test: Omit branches/ for branch names
git-svn-id: https://svn.dealii.org/trunk@29085
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maier [Wed, 27 Mar 2013 19:21:38 +0000 (19:21 +0000)]
CMake: Improve IDE support:
- Add headers and inst files to OBJECT targets
- Add OBJECT targets for "header only" template stuff
git-svn-id: https://svn.dealii.org/branches/branch_cmake@29084
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maier [Wed, 27 Mar 2013 19:18:36 +0000 (19:18 +0000)]
Merge branch 'trunk' into branch_cmake
git-svn-id: https://svn.dealii.org/branches/branch_cmake@29083
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maier [Wed, 27 Mar 2013 17:37:14 +0000 (17:37 +0000)]
CMake: Bugfix
git-svn-id: https://svn.dealii.org/trunk@29082
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maier [Wed, 27 Mar 2013 17:11:27 +0000 (17:11 +0000)]
CMake: Disable all ENABLE_IF_LINKS checks for now until the macro is properly implemented
git-svn-id: https://svn.dealii.org/trunk@29081
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maier [Wed, 27 Mar 2013 17:11:26 +0000 (17:11 +0000)]
CMake: Bugfix: Implement ENABLE_IF_LINKS with CHECK_CXX_COMPILER_FLAG
git-svn-id: https://svn.dealii.org/trunk@29080
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maier [Wed, 27 Mar 2013 16:56:22 +0000 (16:56 +0000)]
CMake: Bugfix: Remove invalid characters from test names in ENABLE_IF_(SUPPORTED|LINKS)
git-svn-id: https://svn.dealii.org/trunk@29079
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turcksin [Wed, 27 Mar 2013 16:49:39 +0000 (16:49 +0000)]
Fix a bug introduced in revision 29049.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29078
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heister [Wed, 27 Mar 2013 15:20:45 +0000 (15:20 +0000)]
remove code from TimerOutput that messes with the total time
git-svn-id: https://svn.dealii.org/trunk@29077
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heister [Wed, 27 Mar 2013 15:08:37 +0000 (15:08 +0000)]
fix test
git-svn-id: https://svn.dealii.org/trunk@29076
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heister [Wed, 27 Mar 2013 15:07:57 +0000 (15:07 +0000)]
convert more tests to MPI_InitFinalize
git-svn-id: https://svn.dealii.org/trunk@29075
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heister [Wed, 27 Mar 2013 14:53:45 +0000 (14:53 +0000)]
switch more tests to MPI_InitFinalize
git-svn-id: https://svn.dealii.org/trunk@29074
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heister [Wed, 27 Mar 2013 14:37:04 +0000 (14:37 +0000)]
remove deprecated compress calls
git-svn-id: https://svn.dealii.org/trunk@29073
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bangerth [Wed, 27 Mar 2013 14:22:53 +0000 (14:22 +0000)]
Outlaw the use of local_range() and in_local_range() if the vector is not contiguous on the current processor.
git-svn-id: https://svn.dealii.org/trunk@29072
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maier [Wed, 27 Mar 2013 14:02:46 +0000 (14:02 +0000)]
Don't run step-21 in the build_test.
git-svn-id: https://svn.dealii.org/trunk@29071
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bangerth [Wed, 27 Mar 2013 14:02:32 +0000 (14:02 +0000)]
Improve error message.
git-svn-id: https://svn.dealii.org/trunk@29070
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bangerth [Wed, 27 Mar 2013 13:59:55 +0000 (13:59 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@29069
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bangerth [Wed, 27 Mar 2013 13:03:14 +0000 (13:03 +0000)]
Add an assertion.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29068
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bangerth [Wed, 27 Mar 2013 12:52:57 +0000 (12:52 +0000)]
Fix another place.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29067
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bangerth [Wed, 27 Mar 2013 12:45:18 +0000 (12:45 +0000)]
Use correct construct to generate an Epetra_Map.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29066
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bangerth [Wed, 27 Mar 2013 12:44:52 +0000 (12:44 +0000)]
Use correct construct to generate an Epetra_Map.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29065
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bangerth [Wed, 27 Mar 2013 12:24:08 +0000 (12:24 +0000)]
Add comment.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29064
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bangerth [Wed, 27 Mar 2013 12:22:58 +0000 (12:22 +0000)]
Add a test that currently crashes.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29063
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bangerth [Wed, 27 Mar 2013 11:44:16 +0000 (11:44 +0000)]
Fix up a few tests.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29062
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bangerth [Wed, 27 Mar 2013 11:40:10 +0000 (11:40 +0000)]
Make run again.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29061
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bangerth [Wed, 27 Mar 2013 11:20:54 +0000 (11:20 +0000)]
Simplify test.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29060
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maier [Wed, 27 Mar 2013 11:13:39 +0000 (11:13 +0000)]
CMake: Enable -pedantic at the very beginning
git-svn-id: https://svn.dealii.org/trunk@29059
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maier [Wed, 27 Mar 2013 11:13:38 +0000 (11:13 +0000)]
CMake: Workaround a bug in CMake's XCode generator
git-svn-id: https://svn.dealii.org/trunk@29058
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bangerth [Wed, 27 Mar 2013 10:49:48 +0000 (10:49 +0000)]
Add something to the documentation.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29057
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maier [Wed, 27 Mar 2013 10:23:05 +0000 (10:23 +0000)]
Improve build_test:
- Remove obsolete lines from build_test
- add a bunch of tests to run and a toggle RUN_TESTS to skip this step
- run examples in debug and build configuration
git-svn-id: https://svn.dealii.org/trunk@29056
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maier [Wed, 27 Mar 2013 10:23:04 +0000 (10:23 +0000)]
CMake: Don't be too greedy when installing examples
git-svn-id: https://svn.dealii.org/trunk@29055
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heister [Wed, 27 Mar 2013 03:46:26 +0000 (03:46 +0000)]
switch tests to MPI_InitFinalize (some more to come)
git-svn-id: https://svn.dealii.org/trunk@29054
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heister [Wed, 27 Mar 2013 03:33:29 +0000 (03:33 +0000)]
make PETSc tests use MPI_InitFinalize
git-svn-id: https://svn.dealii.org/trunk@29053
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heister [Wed, 27 Mar 2013 03:31:17 +0000 (03:31 +0000)]
make MPI_InitFinalize initialize PETSc even if not using MPI
git-svn-id: https://svn.dealii.org/trunk@29052
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bangerth [Wed, 27 Mar 2013 02:04:37 +0000 (02:04 +0000)]
Add.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29051
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bangerth [Wed, 27 Mar 2013 01:55:31 +0000 (01:55 +0000)]
Fix indentation.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29050
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turcksin [Tue, 26 Mar 2013 22:03:23 +0000 (22:03 +0000)]
Fix some inconsistencies in the use of 64 bits functions of Trilinos.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29049
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bangerth [Tue, 26 Mar 2013 21:33:19 +0000 (21:33 +0000)]
Several more.
git-svn-id: https://svn.dealii.org/trunk@29048
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heister [Tue, 26 Mar 2013 20:18:22 +0000 (20:18 +0000)]
PETSc examples work with threading enabled at configure time. Turn off at runtime.
git-svn-id: https://svn.dealii.org/trunk@29047
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heister [Tue, 26 Mar 2013 20:17:22 +0000 (20:17 +0000)]
Check at runtime that we do not use multiple threads when using PETSc vectors
git-svn-id: https://svn.dealii.org/trunk@29046
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heister [Tue, 26 Mar 2013 20:16:53 +0000 (20:16 +0000)]
Routine to set number of threads of TBB. MPI_InitFinalize by default sets it to 1.
git-svn-id: https://svn.dealii.org/trunk@29045
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heister [Tue, 26 Mar 2013 20:14:49 +0000 (20:14 +0000)]
Fix TimerOutput::reset() total time
git-svn-id: https://svn.dealii.org/trunk@29044
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bangerth [Tue, 26 Mar 2013 19:51:19 +0000 (19:51 +0000)]
Fix typo (reported by Yunhuang Zhang).
git-svn-id: https://svn.dealii.org/trunk@29043
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turcksin [Tue, 26 Mar 2013 19:40:07 +0000 (19:40 +0000)]
Replace 64 bits functions by generic methods.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29042
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kainan.wang [Tue, 26 Mar 2013 18:39:23 +0000 (18:39 +0000)]
Change places in trilinos tests
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29041
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kainan.wang [Tue, 26 Mar 2013 16:49:47 +0000 (16:49 +0000)]
generic methods for XXX and XXX64 in trilinos
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29040
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turcksin [Tue, 26 Mar 2013 15:50:26 +0000 (15:50 +0000)]
Use 64 bits version of trilinos functions and replace n_global_elements by NumGlobalElements64 which according to the Trilinos library works for 32 and 64 bits.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29039
0785d39b -7218-0410-832d-
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maier [Tue, 26 Mar 2013 12:48:08 +0000 (12:48 +0000)]
CMake: Bugfix: Add an INSTALL_NAME_DIR target property to avoid the use of DYLD_LIBRARY_PATH on Mac OS X
git-svn-id: https://svn.dealii.org/trunk@29038
0785d39b -7218-0410-832d-
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kainan.wang [Tue, 26 Mar 2013 06:46:42 +0000 (06:46 +0000)]
Change more places for trilinos XXX64
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29037
0785d39b -7218-0410-832d-
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kainan.wang [Tue, 26 Mar 2013 05:16:16 +0000 (05:16 +0000)]
change two trilinos function calls to XXX64
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29036
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bangerth [Tue, 26 Mar 2013 02:51:59 +0000 (02:51 +0000)]
Make sure we call the correct Trilinos function.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29035
0785d39b -7218-0410-832d-
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bangerth [Tue, 26 Mar 2013 00:30:09 +0000 (00:30 +0000)]
Fix one more place.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29034
0785d39b -7218-0410-832d-
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bangerth [Tue, 26 Mar 2013 00:21:13 +0000 (00:21 +0000)]
Make run again.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29033
0785d39b -7218-0410-832d-
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bangerth [Tue, 26 Mar 2013 00:06:21 +0000 (00:06 +0000)]
Use correct Trilinos function to avoid an exception being thrown.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29032
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turcksin [Mon, 25 Mar 2013 22:38:21 +0000 (22:38 +0000)]
Fix test 52 of Trilinos to use 64 bits and fix a bug in trilinos_vector.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29031
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turcksin [Mon, 25 Mar 2013 21:27:09 +0000 (21:27 +0000)]
Use the 64 bits version of Trilinos 11.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29030
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maier [Mon, 25 Mar 2013 15:10:41 +0000 (15:10 +0000)]
CMake: Resolve a cache invalidation problem
git-svn-id: https://svn.dealii.org/trunk@29028
0785d39b -7218-0410-832d-
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bangerth [Mon, 25 Mar 2013 14:53:34 +0000 (14:53 +0000)]
Patch by Juan Carlos Araujo Cabarcas: Explain how to use ARPACK as an alternative to SLEPc.
git-svn-id: https://svn.dealii.org/trunk@29027
0785d39b -7218-0410-832d-
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