]>
https://gitweb.dealii.org/ - dealii-svn.git/log
bangerth [Wed, 7 Sep 2011 23:21:05 +0000 (23:21 +0000)]
Fix by Patrick Sodre: FEFieldFunction was not thread-safe due to the cell_hint cache (a mutable variable) that different threads kept stomping on. This is now fixed using a thread-local variable.
git-svn-id: https://svn.dealii.org/trunk@24281
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bangerth [Wed, 7 Sep 2011 22:29:45 +0000 (22:29 +0000)]
Have a way to escape expansion of step-xx in situations where we don't want to expand because in that context doxygen would not resolve the explicit reference. Use this mechanism in a bunch of places in the tutorial.
git-svn-id: https://svn.dealii.org/trunk@24280
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bangerth [Wed, 7 Sep 2011 21:45:38 +0000 (21:45 +0000)]
Rename test.
git-svn-id: https://svn.dealii.org/trunk@24279
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bangerth [Wed, 7 Sep 2011 21:42:21 +0000 (21:42 +0000)]
Add comment on what the test actually does.
git-svn-id: https://svn.dealii.org/trunk@24278
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bangerth [Wed, 7 Sep 2011 19:45:49 +0000 (19:45 +0000)]
Use a way to reference labels that will not lead to them being escaped.
git-svn-id: https://svn.dealii.org/trunk@24277
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bangerth [Tue, 6 Sep 2011 20:56:51 +0000 (20:56 +0000)]
Make compile with older compilers.
git-svn-id: https://svn.dealii.org/trunk@24276
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kanschat [Tue, 6 Sep 2011 16:33:12 +0000 (16:33 +0000)]
Use only files needed and add documantation
git-svn-id: https://svn.dealii.org/trunk@24275
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kanschat [Tue, 6 Sep 2011 16:26:24 +0000 (16:26 +0000)]
...and thnings compile again
git-svn-id: https://svn.dealii.org/trunk@24274
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kanschat [Tue, 6 Sep 2011 16:15:40 +0000 (16:15 +0000)]
start splitting assembler.h
git-svn-id: https://svn.dealii.org/trunk@24273
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kanschat [Tue, 6 Sep 2011 16:01:55 +0000 (16:01 +0000)]
split template file
git-svn-id: https://svn.dealii.org/trunk@24272
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kanschat [Tue, 6 Sep 2011 15:56:41 +0000 (15:56 +0000)]
eliminate old style includes for meshworker
git-svn-id: https://svn.dealii.org/trunk@24271
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kanschat [Tue, 6 Sep 2011 15:43:55 +0000 (15:43 +0000)]
compatibility file for last move
git-svn-id: https://svn.dealii.org/trunk@24270
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kanschat [Tue, 6 Sep 2011 15:39:23 +0000 (15:39 +0000)]
move next file
git-svn-id: https://svn.dealii.org/trunk@24269
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kanschat [Tue, 6 Sep 2011 15:37:35 +0000 (15:37 +0000)]
move next file
git-svn-id: https://svn.dealii.org/trunk@24268
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kanschat [Tue, 6 Sep 2011 15:36:20 +0000 (15:36 +0000)]
move next file
git-svn-id: https://svn.dealii.org/trunk@24267
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kanschat [Tue, 6 Sep 2011 15:33:32 +0000 (15:33 +0000)]
re-add file with diversion
git-svn-id: https://svn.dealii.org/trunk@24266
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kanschat [Tue, 6 Sep 2011 15:02:58 +0000 (15:02 +0000)]
Fix some obvious nonsense in the documentation
git-svn-id: https://svn.dealii.org/trunk@24265
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young [Tue, 6 Sep 2011 12:33:37 +0000 (12:33 +0000)]
Fix SLEPc libraries for slepc-dev
git-svn-id: https://svn.dealii.org/trunk@24264
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young [Tue, 6 Sep 2011 12:14:00 +0000 (12:14 +0000)]
Make compiling scripts pretty (align=)
git-svn-id: https://svn.dealii.org/trunk@24263
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young [Tue, 6 Sep 2011 10:19:18 +0000 (10:19 +0000)]
Stop configure making stuff up about PETSc
git-svn-id: https://svn.dealii.org/trunk@24262
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young [Tue, 6 Sep 2011 09:21:48 +0000 (09:21 +0000)]
Upgrade SLEPc to petsc/slepc-dev
git-svn-id: https://svn.dealii.org/trunk@24261
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young [Tue, 6 Sep 2011 09:10:59 +0000 (09:10 +0000)]
Put missing petsc-dev upgrade in
git-svn-id: https://svn.dealii.org/trunk@24260
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young [Tue, 6 Sep 2011 08:25:06 +0000 (08:25 +0000)]
Upgrade petsc solvers to petsc-dev
git-svn-id: https://svn.dealii.org/trunk@24259
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young [Tue, 6 Sep 2011 08:23:59 +0000 (08:23 +0000)]
Upgrade PETSc matrices to petsc-dev
git-svn-id: https://svn.dealii.org/trunk@24258
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young [Tue, 6 Sep 2011 08:23:07 +0000 (08:23 +0000)]
Upgrade PETSc vectors to petsc-dev
git-svn-id: https://svn.dealii.org/trunk@24257
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young [Tue, 6 Sep 2011 07:50:48 +0000 (07:50 +0000)]
Function check for PETSc dev - looks like version checks
git-svn-id: https://svn.dealii.org/trunk@24256
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young [Tue, 6 Sep 2011 07:39:06 +0000 (07:39 +0000)]
Function check for PETSc dev - looks like version checks
git-svn-id: https://svn.dealii.org/trunk@24255
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kanschat [Mon, 5 Sep 2011 19:13:04 +0000 (19:13 +0000)]
move assember file
git-svn-id: https://svn.dealii.org/trunk@24254
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kanschat [Mon, 5 Sep 2011 19:05:36 +0000 (19:05 +0000)]
svn had swallowed these
git-svn-id: https://svn.dealii.org/trunk@24253
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heister [Mon, 5 Sep 2011 15:34:35 +0000 (15:34 +0000)]
update mesh_conversion readme
git-svn-id: https://svn.dealii.org/trunk@24252
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heister [Mon, 5 Sep 2011 15:28:02 +0000 (15:28 +0000)]
super simple test script for the mesh_conversion tool
git-svn-id: https://svn.dealii.org/trunk@24251
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heister [Mon, 5 Sep 2011 15:26:36 +0000 (15:26 +0000)]
update cubit/abaqus mesh conversion tool and update example files.
git-svn-id: https://svn.dealii.org/trunk@24250
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young [Mon, 5 Sep 2011 09:19:15 +0000 (09:19 +0000)]
Update check for PETSC_VERSION
git-svn-id: https://svn.dealii.org/trunk@24249
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young [Sun, 4 Sep 2011 17:26:31 +0000 (17:26 +0000)]
Fix no-effect statement
git-svn-id: https://svn.dealii.org/trunk@24248
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young [Sun, 4 Sep 2011 17:20:00 +0000 (17:20 +0000)]
Fix header includes in meshworker
git-svn-id: https://svn.dealii.org/trunk@24247
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kanschat [Sat, 3 Sep 2011 17:50:53 +0000 (17:50 +0000)]
start moving meshworkwer
git-svn-id: https://svn.dealii.org/trunk@24246
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bangerth [Sat, 3 Sep 2011 00:23:29 +0000 (00:23 +0000)]
Implement GridTools::volume.
git-svn-id: https://svn.dealii.org/trunk@24245
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bangerth [Sat, 3 Sep 2011 00:04:52 +0000 (00:04 +0000)]
New test.
git-svn-id: https://svn.dealii.org/trunk@24244
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bangerth [Fri, 2 Sep 2011 23:48:30 +0000 (23:48 +0000)]
Remove some specializations for 1d since the generic code now also works for 1d.
git-svn-id: https://svn.dealii.org/trunk@24243
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kronbichler [Fri, 2 Sep 2011 09:47:37 +0000 (09:47 +0000)]
Correct number of global refinements: should be five.
git-svn-id: https://svn.dealii.org/trunk@24232
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kronbichler [Wed, 31 Aug 2011 13:32:11 +0000 (13:32 +0000)]
Fix stabilization for alpha=2: need to weight by entropy then. Also, the entropy needs to be computed against the average temperature.
git-svn-id: https://svn.dealii.org/trunk@24229
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bangerth [Wed, 31 Aug 2011 13:00:07 +0000 (13:00 +0000)]
Add a link. Fix a duplicate word.
git-svn-id: https://svn.dealii.org/trunk@24228
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bangerth [Wed, 31 Aug 2011 11:30:40 +0000 (11:30 +0000)]
Add missing header file and update test output.
git-svn-id: https://svn.dealii.org/trunk@24227
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bangerth [Wed, 31 Aug 2011 11:30:33 +0000 (11:30 +0000)]
Add missing header file and update test output.
git-svn-id: https://svn.dealii.org/trunk@24226
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bangerth [Wed, 31 Aug 2011 03:09:10 +0000 (03:09 +0000)]
Remove another test that is now no longer useful after r24219.
git-svn-id: https://svn.dealii.org/trunk@24225
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bangerth [Wed, 31 Aug 2011 01:19:35 +0000 (01:19 +0000)]
Implement getting and setting boundary indicators of triangulations in 1d as well.
git-svn-id: https://svn.dealii.org/trunk@24224
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bangerth [Tue, 30 Aug 2011 23:55:09 +0000 (23:55 +0000)]
New test.
git-svn-id: https://svn.dealii.org/trunk@24223
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bangerth [Tue, 30 Aug 2011 23:07:33 +0000 (23:07 +0000)]
Fix cut'n'pasto in exception message.
git-svn-id: https://svn.dealii.org/trunk@24222
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bangerth [Tue, 30 Aug 2011 23:06:29 +0000 (23:06 +0000)]
Remove tests that are no longer supported.
git-svn-id: https://svn.dealii.org/trunk@24221
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bangerth [Tue, 30 Aug 2011 23:05:34 +0000 (23:05 +0000)]
New test.
git-svn-id: https://svn.dealii.org/trunk@24220
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bangerth [Tue, 30 Aug 2011 19:14:51 +0000 (19:14 +0000)]
No longer try to call PETScWrappers::MatrixBase::compress() automatically, but instead only error out if the user tries to do something that won't work.
git-svn-id: https://svn.dealii.org/trunk@24219
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kanschat [Tue, 30 Aug 2011 16:30:56 +0000 (16:30 +0000)]
bibtex and standardize
git-svn-id: https://svn.dealii.org/trunk@24218
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bangerth [Tue, 30 Aug 2011 16:10:43 +0000 (16:10 +0000)]
Fix typo.
git-svn-id: https://svn.dealii.org/trunk@24217
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kanschat [Tue, 30 Aug 2011 15:49:18 +0000 (15:49 +0000)]
update papers
git-svn-id: https://svn.dealii.org/trunk@24216
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bangerth [Tue, 30 Aug 2011 15:08:52 +0000 (15:08 +0000)]
Restore the previous precision and width of the stream after printing a timer summary.
git-svn-id: https://svn.dealii.org/trunk@24215
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heister [Tue, 30 Aug 2011 14:43:11 +0000 (14:43 +0000)]
fixed ConstraintMatrix::distribute() when a CPU has no own DoFs
git-svn-id: https://svn.dealii.org/trunk@24214
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bangerth [Tue, 30 Aug 2011 00:04:12 +0000 (00:04 +0000)]
Adjust output files for computing the exact boundary normal in no_normal_flux (r24198).
git-svn-id: https://svn.dealii.org/trunk@24213
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heister [Mon, 29 Aug 2011 22:24:36 +0000 (22:24 +0000)]
fix test output
git-svn-id: https://svn.dealii.org/trunk@24212
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heister [Mon, 29 Aug 2011 22:24:30 +0000 (22:24 +0000)]
fix bug in parallel::distributed::GridRefinement for a mesh with less cells than CPUs involved.
git-svn-id: https://svn.dealii.org/trunk@24211
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heister [Mon, 29 Aug 2011 22:18:26 +0000 (22:18 +0000)]
document bug in parallel::distributed::refine_and_coarsen*() with more CPUs than cells
git-svn-id: https://svn.dealii.org/trunk@24210
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heister [Mon, 29 Aug 2011 21:59:20 +0000 (21:59 +0000)]
add test that documents unwanted PETSc::MPI::SparseMatrix behavior. Currently disabled, because it hangs
git-svn-id: https://svn.dealii.org/trunk@24209
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bangerth [Mon, 29 Aug 2011 20:31:51 +0000 (20:31 +0000)]
Remove two macros we apparently don't need.
git-svn-id: https://svn.dealii.org/trunk@24208
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bangerth [Mon, 29 Aug 2011 17:37:19 +0000 (17:37 +0000)]
Reduce the number of cells being refined. Make it compile with gcc 4.1.
git-svn-id: https://svn.dealii.org/trunk@24207
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kronbichler [Fri, 26 Aug 2011 11:25:04 +0000 (11:25 +0000)]
Speed up dof_indices_with_subdomain_association.
git-svn-id: https://svn.dealii.org/trunk@24206
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bangerth [Thu, 25 Aug 2011 20:35:25 +0000 (20:35 +0000)]
Do not use typename outside of templates.
git-svn-id: https://svn.dealii.org/trunk@24205
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bangerth [Thu, 25 Aug 2011 19:13:52 +0000 (19:13 +0000)]
New test.
git-svn-id: https://svn.dealii.org/trunk@24204
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bangerth [Thu, 25 Aug 2011 19:13:06 +0000 (19:13 +0000)]
Leave two TODOs.
git-svn-id: https://svn.dealii.org/trunk@24203
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bangerth [Thu, 25 Aug 2011 19:02:42 +0000 (19:02 +0000)]
Add Utilities::string_to_double.
git-svn-id: https://svn.dealii.org/trunk@24202
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heister [Thu, 25 Aug 2011 16:34:19 +0000 (16:34 +0000)]
make test more reliable by moving the temporary files into the ncpu_*
directory. This way the test can be run at the same time for different
cpu counts.
git-svn-id: https://svn.dealii.org/trunk@24201
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heister [Thu, 25 Aug 2011 16:19:37 +0000 (16:19 +0000)]
make test more reliable by skipping writing/reading from files. It failed if run with different processor counts at the same time.
git-svn-id: https://svn.dealii.org/trunk@24200
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bangerth [Thu, 25 Aug 2011 16:15:24 +0000 (16:15 +0000)]
Ignore kdevelop4 project files throughout a bunch of directories.
git-svn-id: https://svn.dealii.org/trunk@24199
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bangerth [Thu, 25 Aug 2011 16:03:13 +0000 (16:03 +0000)]
Compute normal vectors in no_normal_flux by querying the Boundary object, rather than the Mapping object.
git-svn-id: https://svn.dealii.org/trunk@24198
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bangerth [Thu, 25 Aug 2011 15:51:59 +0000 (15:51 +0000)]
Add Boundary::normal_vector. Implement it. Test it.
git-svn-id: https://svn.dealii.org/trunk@24197
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heister [Thu, 25 Aug 2011 15:10:44 +0000 (15:10 +0000)]
fix test output
git-svn-id: https://svn.dealii.org/trunk@24196
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heister [Thu, 25 Aug 2011 14:25:33 +0000 (14:25 +0000)]
fix test output
git-svn-id: https://svn.dealii.org/trunk@24195
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heister [Thu, 25 Aug 2011 14:25:14 +0000 (14:25 +0000)]
fix DoFRenumbering::hierarchical for a distributed Triangulation
git-svn-id: https://svn.dealii.org/trunk@24194
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bangerth [Thu, 25 Aug 2011 02:35:27 +0000 (02:35 +0000)]
Add one test.
git-svn-id: https://svn.dealii.org/trunk@24193
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bangerth [Thu, 25 Aug 2011 02:06:47 +0000 (02:06 +0000)]
Rename test.
git-svn-id: https://svn.dealii.org/trunk@24192
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bangerth [Wed, 24 Aug 2011 22:19:37 +0000 (22:19 +0000)]
Mention Martin's fix for VectorTools::compute_no_normal_flux_constraints.
git-svn-id: https://svn.dealii.org/trunk@24191
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bangerth [Wed, 24 Aug 2011 22:16:45 +0000 (22:16 +0000)]
Fix member syntax.
git-svn-id: https://svn.dealii.org/trunk@24190
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heister [Wed, 24 Aug 2011 21:14:52 +0000 (21:14 +0000)]
update test description
git-svn-id: https://svn.dealii.org/trunk@24189
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heister [Wed, 24 Aug 2011 20:39:36 +0000 (20:39 +0000)]
add failing no_flux test (need to fix DoFRenumbering::hierarchical() first
git-svn-id: https://svn.dealii.org/trunk@24188
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heister [Wed, 24 Aug 2011 20:38:58 +0000 (20:38 +0000)]
edit svn:ignore
git-svn-id: https://svn.dealii.org/trunk@24187
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heister [Wed, 24 Aug 2011 20:35:09 +0000 (20:35 +0000)]
add failing test for DoFRenumbering::hierarchical()
git-svn-id: https://svn.dealii.org/trunk@24186
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heister [Wed, 24 Aug 2011 20:17:44 +0000 (20:17 +0000)]
test for ConstraintMatrix with hanging nodes and no_normal_flux being
consistent in distributed computation:
git-svn-id: https://svn.dealii.org/trunk@24185
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bangerth [Wed, 24 Aug 2011 19:22:00 +0000 (19:22 +0000)]
Move the creation of the FEValues out of the inner loop so that we can
reuse things. Needs a bit of effort since we have to deal with
hp-DoFHandlers, but nothing too difficult.
git-svn-id: https://svn.dealii.org/trunk@24184
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bangerth [Wed, 24 Aug 2011 19:16:00 +0000 (19:16 +0000)]
Reorder member functions.
git-svn-id: https://svn.dealii.org/trunk@24183
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heister [Wed, 24 Aug 2011 18:31:08 +0000 (18:31 +0000)]
fix comment
git-svn-id: https://svn.dealii.org/trunk@24182
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heister [Wed, 24 Aug 2011 18:30:31 +0000 (18:30 +0000)]
additional sanity checks in ConstraintMatrix in debug mode.
git-svn-id: https://svn.dealii.org/trunk@24181
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heister [Wed, 24 Aug 2011 18:24:25 +0000 (18:24 +0000)]
Tests for DoFRenumbering::hierarchical().
git-svn-id: https://svn.dealii.org/trunk@24180
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heister [Wed, 24 Aug 2011 18:22:58 +0000 (18:22 +0000)]
add parallel test for DoFRenumbering::hierarchical()
git-svn-id: https://svn.dealii.org/trunk@24179
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heister [Wed, 24 Aug 2011 16:36:32 +0000 (16:36 +0000)]
Added GridRefinement:hierarchical() to reorder the degrees of freedom by going through the cells in hierarchical order. This ensures consistent DoF numbering in parallel computations.
git-svn-id: https://svn.dealii.org/trunk@24178
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bangerth [Wed, 24 Aug 2011 16:18:25 +0000 (16:18 +0000)]
Update after the changes to no_normal_flux.
git-svn-id: https://svn.dealii.org/trunk@24177
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bangerth [Wed, 24 Aug 2011 13:52:08 +0000 (13:52 +0000)]
Check in a fix provided by Martin Kronbichler for the problem that different
processors disagree as to which DoF to constrain, leading to an incredibly
difficult to find bug. This happened with step-32, so is a common enough case
trying to work around.
git-svn-id: https://svn.dealii.org/trunk@24176
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kronbichler [Wed, 24 Aug 2011 12:14:21 +0000 (12:14 +0000)]
Modify shell radius to make test fail.
git-svn-id: https://svn.dealii.org/trunk@24175
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kronbichler [Wed, 24 Aug 2011 11:23:07 +0000 (11:23 +0000)]
Use Q2 instead of Q1, set default output.
git-svn-id: https://svn.dealii.org/trunk@24174
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kronbichler [Wed, 24 Aug 2011 11:03:20 +0000 (11:03 +0000)]
Add test that makes sure that no entries are written into constrained entries in assembly.
git-svn-id: https://svn.dealii.org/trunk@24173
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kronbichler [Tue, 23 Aug 2011 09:42:53 +0000 (09:42 +0000)]
Speed up initialization of MG transfer matrices by using a CompressedSimpleSparsityPattern that is later copied to a SparsityPattern.
git-svn-id: https://svn.dealii.org/trunk@24172
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kronbichler [Tue, 23 Aug 2011 09:42:08 +0000 (09:42 +0000)]
Fix comment.
git-svn-id: https://svn.dealii.org/trunk@24171
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kronbichler [Tue, 23 Aug 2011 09:41:55 +0000 (09:41 +0000)]
Fix computation of eigenvalues when only a few iterations are done.
git-svn-id: https://svn.dealii.org/trunk@24170
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