]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
6 years agoSimplify the logic used and extract all locally relevant DoFs 5604/head
Daniel Arndt [Thu, 21 Dec 2017 17:27:59 +0000 (18:27 +0100)]
Simplify the logic used and extract all locally relevant DoFs

6 years agoIndexSet overload
Daniel Arndt [Sat, 16 Dec 2017 01:28:38 +0000 (02:28 +0100)]
IndexSet overload

6 years agoMake DoFTools::extract_hanging_node_dofs for p::d/s::Triangualations
Daniel Arndt [Sat, 9 Dec 2017 01:38:00 +0000 (02:38 +0100)]
Make DoFTools::extract_hanging_node_dofs for p::d/s::Triangualations

6 years agoMerge pull request #5596 from bangerth/fix 5603/head
David Wells [Fri, 8 Dec 2017 21:16:22 +0000 (16:16 -0500)]
Merge pull request #5596 from bangerth/fix

Update documentation of a function.

6 years agoGeneral small cleanups. 5596/head
Wolfgang Bangerth [Thu, 7 Dec 2017 23:35:35 +0000 (16:35 -0700)]
General small cleanups.

6 years agoUpdate documentation of a function.
Wolfgang Bangerth [Thu, 7 Dec 2017 23:35:25 +0000 (16:35 -0700)]
Update documentation of a function.

6 years agoMerge pull request #5602 from bangerth/running-patches
Martin Kronbichler [Fri, 8 Dec 2017 17:26:24 +0000 (18:26 +0100)]
Merge pull request #5602 from bangerth/running-patches

Add another missing instantiation for complex-valued functions.

6 years agoAdd a test. 5602/head
Wolfgang Bangerth [Thu, 7 Dec 2017 22:16:16 +0000 (15:16 -0700)]
Add a test.

6 years agoAdd another missing instantiation.
Wolfgang Bangerth [Thu, 7 Dec 2017 22:16:03 +0000 (15:16 -0700)]
Add another missing instantiation.

6 years agoMerge pull request #5590 from bangerth/more-complex
Martin Kronbichler [Fri, 8 Dec 2017 09:35:59 +0000 (10:35 +0100)]
Merge pull request #5590 from bangerth/more-complex

Provide more instantiations for std::complex data types.

6 years agoMerge pull request #5599 from drwells/update-project_to_object-test-2
Martin Kronbichler [Fri, 8 Dec 2017 09:11:56 +0000 (10:11 +0100)]
Merge pull request #5599 from drwells/update-project_to_object-test-2

Check a convergence rate, not errors, in a test.

6 years agoMerge pull request #5597 from bangerth/fix-grammar
Martin Kronbichler [Fri, 8 Dec 2017 08:21:59 +0000 (09:21 +0100)]
Merge pull request #5597 from bangerth/fix-grammar

Fix grammar issues.

6 years agoFix grammar issues. 5597/head
Wolfgang Bangerth [Thu, 7 Dec 2017 23:56:36 +0000 (16:56 -0700)]
Fix grammar issues.

6 years agoMerge pull request #5600 from drwells/remove-dofhandler-begin-face-doc
Wolfgang Bangerth [Fri, 8 Dec 2017 04:56:36 +0000 (21:56 -0700)]
Merge pull request #5600 from drwells/remove-dofhandler-begin-face-doc

Remove dofhandler begin face doc

6 years agoFix Doxygen links in an ad-hoc way. 5600/head
David Wells [Fri, 8 Dec 2017 01:44:14 +0000 (20:44 -0500)]
Fix Doxygen links in an ad-hoc way.

6 years agoCheck a convergence rate, not errors, in a test. 5599/head
David Wells [Fri, 8 Dec 2017 00:48:55 +0000 (19:48 -0500)]
Check a convergence rate, not errors, in a test.

6 years agoFix some doxygen links.
David Wells [Fri, 8 Dec 2017 00:34:34 +0000 (19:34 -0500)]
Fix some doxygen links.

6 years agoRemove references to DoFHandler::active_face_iterator.
David Wells [Fri, 8 Dec 2017 00:22:23 +0000 (19:22 -0500)]
Remove references to DoFHandler::active_face_iterator.

This function was removed in 3df8fcd2122 but was still in the module-level
documentation.

6 years agoUse 'parent' instead of 'mother'.
David Wells [Fri, 8 Dec 2017 00:21:56 +0000 (19:21 -0500)]
Use 'parent' instead of 'mother'.

The Triangulation documentation uses 'parent'.

6 years agoMerge pull request #5591 from Rombur/typo
Wolfgang Bangerth [Thu, 7 Dec 2017 14:32:03 +0000 (07:32 -0700)]
Merge pull request #5591 from Rombur/typo

Clean up Python wrrappers

6 years agoMerge pull request #5593 from davydden/changelog_lapack_triangualr
Wolfgang Bangerth [Thu, 7 Dec 2017 14:30:52 +0000 (07:30 -0700)]
Merge pull request #5593 from davydden/changelog_lapack_triangualr

add a changelog for LAPACKFullMatrix::solve()

6 years agoMerge pull request #5594 from agrayver/fix_lapack
Martin Kronbichler [Thu, 7 Dec 2017 09:36:53 +0000 (10:36 +0100)]
Merge pull request #5594 from agrayver/fix_lapack

Fix compilation without LAPACK

6 years agoFix typo 5594/head
Alexander Grayver [Thu, 7 Dec 2017 09:28:04 +0000 (10:28 +0100)]
Fix typo

6 years agoMerge pull request #5558 from drwells/remove-timer-sync-on-exception
Daniel Arndt [Thu, 7 Dec 2017 09:11:38 +0000 (10:11 +0100)]
Merge pull request #5558 from drwells/remove-timer-sync-on-exception

Avoid MPI calls in destructors with exceptions.

6 years agoMerge pull request #5592 from masterleinad/sundials_serial
Martin Kronbichler [Thu, 7 Dec 2017 08:38:44 +0000 (09:38 +0100)]
Merge pull request #5592 from masterleinad/sundials_serial

Make the SUNDIALS solvers usuable for serial vector types

6 years agoadd a changelog for LAPACKFullMatrix::solve() 5593/head
Denis Davydov [Thu, 7 Dec 2017 06:48:34 +0000 (07:48 +0100)]
add a changelog for LAPACKFullMatrix::solve()

6 years agoMake the SUNDIALS solvers usuable for serial vector types 5592/head
Daniel Arndt [Wed, 6 Dec 2017 23:43:12 +0000 (00:43 +0100)]
Make the SUNDIALS solvers usuable for serial vector types

6 years agoMerge pull request #5589 from bangerth/fix-test
Daniel Arndt [Wed, 6 Dec 2017 21:34:15 +0000 (22:34 +0100)]
Merge pull request #5589 from bangerth/fix-test

Remove a test that had been moved into tests/vector_tools.

6 years agoMerge pull request #5585 from davydden/lapack/trmv
Denis Davydov [Wed, 6 Dec 2017 20:23:09 +0000 (21:23 +0100)]
Merge pull request #5585 from davydden/lapack/trmv

add trmv LAPACK wrapper

6 years agoDisable abort on exception for the python wrappers. 5591/head
Bruno Turcksin [Wed, 6 Dec 2017 18:54:56 +0000 (13:54 -0500)]
Disable abort on exception for the python wrappers.

6 years agoRemove c++11 guards.
Bruno Turcksin [Wed, 6 Dec 2017 18:48:28 +0000 (13:48 -0500)]
Remove c++11 guards.

6 years agoFix typos.
Bruno Turcksin [Wed, 6 Dec 2017 02:59:34 +0000 (21:59 -0500)]
Fix typos.

6 years agoMerge pull request #5577 from niveshd/GraphColoring
Wolfgang Bangerth [Wed, 6 Dec 2017 20:15:57 +0000 (13:15 -0700)]
Merge pull request #5577 from niveshd/GraphColoring

Graph coloring

6 years agoProvide more instantiations for std::complex data types. 5590/head
Wolfgang Bangerth [Wed, 6 Dec 2017 20:00:15 +0000 (13:00 -0700)]
Provide more instantiations for std::complex data types.

6 years agoRemove a test that had been moved into tests/vector_tools. 5589/head
Wolfgang Bangerth [Wed, 6 Dec 2017 19:58:57 +0000 (12:58 -0700)]
Remove a test that had been moved into tests/vector_tools.

In commit cceeb7cdbcef8d319a4798d5e0b4b230768869d0, I moved this test but apparently
forgot to delete it at the source. This commit does that.

6 years agoMerge pull request #5587 from ExtremOPS/fix-svg-print
Wolfgang Bangerth [Wed, 6 Dec 2017 17:33:00 +0000 (10:33 -0700)]
Merge pull request #5587 from ExtremOPS/fix-svg-print

added white margin to grey frame for last row or column

6 years agolapack: test solve() with Cholesky factorization, improve documentation 5585/head
Denis Davydov [Wed, 6 Dec 2017 17:23:18 +0000 (18:23 +0100)]
lapack: test solve() with Cholesky factorization, improve documentation

6 years agoadded new test output for print_svg() 5587/head
Christoph Goering [Wed, 6 Dec 2017 15:06:16 +0000 (16:06 +0100)]
added new test output for print_svg()

6 years agolapack: add solve() for triangular matrices or factorized (LU/Cholesky) states
Denis Davydov [Wed, 6 Dec 2017 15:00:36 +0000 (16:00 +0100)]
lapack: add solve() for triangular matrices or factorized (LU/Cholesky) states

6 years agolapack: add vmult() Tvmult() for triangular matrices
Denis Davydov [Wed, 6 Dec 2017 13:44:22 +0000 (14:44 +0100)]
lapack: add vmult() Tvmult() for triangular matrices

6 years agoAvoid MPI calls in ~TimerOutput. 5558/head
David Wells [Thu, 30 Nov 2017 17:52:20 +0000 (12:52 -0500)]
Avoid MPI calls in ~TimerOutput.

~TimerOutput prints timing information after communicating across an MPI
communicator. This MPI call can lead to deadlocks if some, but not all,
proceses throw an exception. Get around this by skipping inter-process
MPI calls when there is an uncaught exception.

6 years agolapack: add reciprocal_condition_number() for triangular matrices
Denis Davydov [Wed, 6 Dec 2017 12:47:44 +0000 (13:47 +0100)]
lapack: add reciprocal_condition_number() for triangular matrices

6 years agoMerge pull request #5581 from luca-heltai/create-curve-from-tria
Daniel Arndt [Wed, 6 Dec 2017 11:05:09 +0000 (12:05 +0100)]
Merge pull request #5581 from luca-heltai/create-curve-from-tria

OpenCASCADE::create_curves_from_triangulation_boundary

6 years agoadded change-log to fixed SparsityPattern::print_svg(...)
Christoph Goering [Wed, 6 Dec 2017 09:00:14 +0000 (10:00 +0100)]
added change-log to fixed SparsityPattern::print_svg(...)

6 years agoAdded instantiations. 5581/head
Luca Heltai [Wed, 6 Dec 2017 08:38:53 +0000 (09:38 +0100)]
Added instantiations.

6 years agoMerge pull request #5588 from masterleinad/Wsignedunsigned
Denis Davydov [Wed, 6 Dec 2017 00:14:33 +0000 (01:14 +0100)]
Merge pull request #5588 from masterleinad/Wsignedunsigned

Fix more warning regarding signed/unsigned comparison

6 years agocolor_sparsity_pattern function added in GraphColoring namespace. Test added for... 5577/head
nivesh [Tue, 5 Dec 2017 18:25:24 +0000 (19:25 +0100)]
color_sparsity_pattern function added in GraphColoring namespace. Test added for the same.

Added assertion

6 years agoMerge pull request #5582 from bangerth/fix-ups
Denis Davydov [Tue, 5 Dec 2017 21:48:27 +0000 (22:48 +0100)]
Merge pull request #5582 from bangerth/fix-ups

Update tests.

6 years agoadded white margin to grey frame for last row or column of printed sparsity entries
Christoph Goering [Tue, 5 Dec 2017 21:27:07 +0000 (22:27 +0100)]
added white margin to grey frame for last row or column of printed sparsity entries

6 years agoMerge pull request #5586 from kronbichler/remove_schur_complement_05
Wolfgang Bangerth [Tue, 5 Dec 2017 20:19:00 +0000 (13:19 -0700)]
Merge pull request #5586 from kronbichler/remove_schur_complement_05

Remove fragile schur_complement_05 test.

6 years agoRemove fragile schur_complement_05 test. 5586/head
Martin Kronbichler [Tue, 5 Dec 2017 17:18:56 +0000 (18:18 +0100)]
Remove fragile schur_complement_05 test.

6 years agoadd trmv LAPACK wrapper
Denis Davydov [Tue, 5 Dec 2017 17:03:00 +0000 (18:03 +0100)]
add trmv LAPACK wrapper

6 years agoFix more warning regarding signed/unsigned comparison 5588/head
darndt [Tue, 5 Dec 2017 16:55:27 +0000 (17:55 +0100)]
Fix more warning regarding signed/unsigned comparison

6 years agoMerge pull request #5564 from kronbichler/fix_manifold_normal_vector
Wolfgang Bangerth [Tue, 5 Dec 2017 15:05:39 +0000 (08:05 -0700)]
Merge pull request #5564 from kronbichler/fix_manifold_normal_vector

Fix Manifold::normal_vector()

6 years agoUpdate tests. 5582/head
Wolfgang Bangerth [Tue, 5 Dec 2017 14:25:48 +0000 (07:25 -0700)]
Update tests.

6 years agoMerge pull request #5579 from bangerth/more-complex-instantiations
Wolfgang Bangerth [Tue, 5 Dec 2017 14:24:15 +0000 (07:24 -0700)]
Merge pull request #5579 from bangerth/more-complex-instantiations

More complex instantiations

6 years agoFixed WB's comments
Luca Heltai [Tue, 5 Dec 2017 14:02:33 +0000 (15:02 +0100)]
Fixed WB's comments

6 years agoTests added for zoltan
nivesh [Tue, 5 Dec 2017 13:11:49 +0000 (14:11 +0100)]
Tests added for zoltan

6 years agocolor_sparsity_function added in sparsity tools
nivesh [Tue, 5 Dec 2017 13:11:14 +0000 (14:11 +0100)]
color_sparsity_function added in sparsity tools

6 years agoOpenCASCADE::create_curves_from_triangulation_boundary
Luca Heltai [Tue, 5 Dec 2017 12:07:52 +0000 (13:07 +0100)]
OpenCASCADE::create_curves_from_triangulation_boundary

6 years agoTest for tangent on spherical manifold to convince myself that the new formula is... 5564/head
Martin Kronbichler [Mon, 4 Dec 2017 20:32:52 +0000 (21:32 +0100)]
Test for tangent on spherical manifold to convince myself that the new formula is correct.

6 years agoAvoid setting a Boundary when we already have a volume manifold.
Martin Kronbichler [Wed, 8 Nov 2017 11:00:37 +0000 (12:00 +0100)]
Avoid setting a Boundary when we already have a volume manifold.

6 years agoAdd changelog.
Martin Kronbichler [Sat, 2 Dec 2017 10:07:30 +0000 (11:07 +0100)]
Add changelog.

6 years agoAdd new no_normal_flux_constraints test that used to throw a FPE.
Martin Kronbichler [Sat, 2 Dec 2017 10:04:47 +0000 (11:04 +0100)]
Add new no_normal_flux_constraints test that used to throw a FPE.

6 years agoAdd two manifold tests for normal vectors.
Martin Kronbichler [Sat, 2 Dec 2017 10:04:25 +0000 (11:04 +0100)]
Add two manifold tests for normal vectors.

6 years agoAdjust test output.
Martin Kronbichler [Sat, 2 Dec 2017 10:04:04 +0000 (11:04 +0100)]
Adjust test output.

6 years agoFix the Manifold::normal_vector function.
Martin Kronbichler [Sat, 2 Dec 2017 10:02:33 +0000 (11:02 +0100)]
Fix the Manifold::normal_vector function.

6 years agoUnify notation in SphericalManifold::get_tangent_vector with get_intermediate_point.
Martin Kronbichler [Sat, 2 Dec 2017 10:02:06 +0000 (11:02 +0100)]
Unify notation in SphericalManifold::get_tangent_vector with get_intermediate_point.

6 years agoMove to the proper test directory. 5579/head
Wolfgang Bangerth [Mon, 4 Dec 2017 18:00:17 +0000 (11:00 -0700)]
Move to the proper test directory.

6 years agoAdd a test.
Wolfgang Bangerth [Mon, 4 Dec 2017 18:00:01 +0000 (11:00 -0700)]
Add a test.

6 years agoAdd more instantiations for complex arguments.
Wolfgang Bangerth [Mon, 4 Dec 2017 17:59:38 +0000 (10:59 -0700)]
Add more instantiations for complex arguments.

6 years agoMerge pull request #5578 from luca-heltai/fix-bug-extract-boundary-mesh
Wolfgang Bangerth [Mon, 4 Dec 2017 17:43:33 +0000 (10:43 -0700)]
Merge pull request #5578 from luca-heltai/fix-bug-extract-boundary-mesh

Fixed bug in create triangulation.

6 years agoChangelog. 5578/head
Luca Heltai [Mon, 4 Dec 2017 15:55:17 +0000 (16:55 +0100)]
Changelog.

6 years agoChecking and reorienting in create_triangulation.
Luca Heltai [Mon, 4 Dec 2017 13:25:12 +0000 (14:25 +0100)]
Checking and reorienting in create_triangulation.

The test added, triggers a bug without these modifications.

6 years agoAdd manifold_id when extracting boundary meshes
Luca Heltai [Mon, 4 Dec 2017 13:24:16 +0000 (14:24 +0100)]
Add manifold_id when extracting boundary meshes

6 years agoMerge pull request #5571 from masterleinad/fix_zoltan_output
Denis Davydov [Sun, 3 Dec 2017 16:30:28 +0000 (17:30 +0100)]
Merge pull request #5571 from masterleinad/fix_zoltan_output

Adjust test output for Zoltan

6 years agoAdjust test output for Zoltan 5571/head
Daniel Arndt [Sun, 3 Dec 2017 10:27:39 +0000 (11:27 +0100)]
Adjust test output for Zoltan

6 years agoMerge pull request #5569 from drwells/update-project_to_object-test
Daniel Arndt [Sun, 3 Dec 2017 09:59:21 +0000 (10:59 +0100)]
Merge pull request #5569 from drwells/update-project_to_object-test

Relax test output for an ill-posed problem.

6 years agoMerge pull request #5568 from masterleinad/avoid_w_signed_unsigned
Denis Davydov [Sun, 3 Dec 2017 06:11:53 +0000 (07:11 +0100)]
Merge pull request #5568 from masterleinad/avoid_w_signed_unsigned

Avoid warnings regarding signed/unsigned comparisons

6 years agoRelax test output for an ill-posed problem. 5569/head
David Wells [Sun, 3 Dec 2017 02:56:49 +0000 (21:56 -0500)]
Relax test output for an ill-posed problem.

There is not a unique solution to this particular projection so, sure enough,
different setups create different answers. Get around this by instead verifying
that the result of the projection is on the right cell and also on the manifold.

6 years agoAvoid warnings regarding comparisons between signed and unsigned variables 5568/head
Daniel Arndt [Sun, 3 Dec 2017 00:20:38 +0000 (01:20 +0100)]
Avoid warnings regarding comparisons between signed and unsigned variables

6 years agoMerge pull request #5566 from kronbichler/revert_rtuc_long_double
Martin Kronbichler [Sat, 2 Dec 2017 20:12:57 +0000 (21:12 +0100)]
Merge pull request #5566 from kronbichler/revert_rtuc_long_double

Revert Mapping::transform_real_to_unit_cell to long double.

6 years agoRevert Mapping::transform_real_to_unit_cell to long double. 5566/head
Martin Kronbichler [Sat, 2 Dec 2017 17:30:40 +0000 (18:30 +0100)]
Revert Mapping::transform_real_to_unit_cell to long double.

6 years agoMerge pull request #5563 from sairajat/fix-docu
Martin Kronbichler [Sat, 2 Dec 2017 12:39:46 +0000 (13:39 +0100)]
Merge pull request #5563 from sairajat/fix-docu

Fix documentation for face support points in fe

6 years agoFix documentation for face support points in fe 5563/head
RAJAT ARORA [Sat, 2 Dec 2017 08:53:24 +0000 (03:53 -0500)]
Fix documentation for face support points in fe

6 years agoMerge pull request #5544 from bangerth/cleanup
Daniel Arndt [Sat, 2 Dec 2017 08:31:05 +0000 (09:31 +0100)]
Merge pull request #5544 from bangerth/cleanup

Minor cleanups to FE_FaceQ.

6 years agoMerge pull request #5561 from bangerth/fix-tests
Daniel Arndt [Fri, 1 Dec 2017 23:57:21 +0000 (00:57 +0100)]
Merge pull request #5561 from bangerth/fix-tests

Fix a number of failing tests.

6 years agoAdjust one test. 5544/head
Wolfgang Bangerth [Fri, 1 Dec 2017 23:54:51 +0000 (16:54 -0700)]
Adjust one test.

6 years agoFix a number of failing tests. 5561/head
Wolfgang Bangerth [Fri, 1 Dec 2017 23:39:46 +0000 (16:39 -0700)]
Fix a number of failing tests.

These tests, for a variety of reasons, no longer compiled. I believe that most of
the issues were introduced in #5547. This fixes them.

6 years agoMerge pull request #5505 from davydden/dense_parallel
Wolfgang Bangerth [Fri, 1 Dec 2017 23:20:54 +0000 (16:20 -0700)]
Merge pull request #5505 from davydden/dense_parallel

add wrappers for ScaLAPACK

6 years agoMerge pull request #5559 from kronbichler/fix_mapping_q1_real_to_unit_singular
Wolfgang Bangerth [Fri, 1 Dec 2017 23:07:16 +0000 (16:07 -0700)]
Merge pull request #5559 from kronbichler/fix_mapping_q1_real_to_unit_singular

Fix singularity (FPE) in MappingQ1::transform_real_to_unit_cell

6 years agoMerge pull request #5533 from bangerth/update-instructions
Denis Davydov [Fri, 1 Dec 2017 18:09:47 +0000 (19:09 +0100)]
Merge pull request #5533 from bangerth/update-instructions

Tell users to build with ZOLTAN.

6 years agoMerge pull request #5547 from masterleinad/p_s_zoltan_default
Denis Davydov [Fri, 1 Dec 2017 18:08:13 +0000 (19:08 +0100)]
Merge pull request #5547 from masterleinad/p_s_zoltan_default

Make partition_zoltan the default choice for p::s::Triangulation

6 years agoMerge pull request #5560 from masterleinad/rand_signed_overflow
Daniel Arndt [Fri, 1 Dec 2017 16:29:26 +0000 (17:29 +0100)]
Merge pull request #5560 from masterleinad/rand_signed_overflow

Avoid signed integer overflow in Testing::rand

6 years agoAvoid signed integer overflow in Testing::rand 5560/head
Daniel Arndt [Fri, 1 Dec 2017 13:50:59 +0000 (14:50 +0100)]
Avoid signed integer overflow in Testing::rand

6 years agoAdd test case. 5559/head
Martin Kronbichler [Fri, 1 Dec 2017 08:42:33 +0000 (09:42 +0100)]
Add test case.

6 years agoAdd changelog
Martin Kronbichler [Fri, 1 Dec 2017 08:42:11 +0000 (09:42 +0100)]
Add changelog

6 years agoFix singularity (FPE) in MappingQ1::real_to_unit_cell.
Martin Kronbichler [Fri, 1 Dec 2017 08:41:59 +0000 (09:41 +0100)]
Fix singularity (FPE) in MappingQ1::real_to_unit_cell.

6 years agoMake sure to not call p::s::Triangulation with a default partitioner in the tests 5547/head
Daniel Arndt [Thu, 30 Nov 2017 16:28:12 +0000 (17:28 +0100)]
Make sure to not call p::s::Triangulation with a default partitioner in the tests

6 years agoMerge pull request #5556 from Rombur/arpack_2
Timo Heister [Thu, 30 Nov 2017 15:09:50 +0000 (10:09 -0500)]
Merge pull request #5556 from Rombur/arpack_2

Remove Doxygen markers inside ArpackSolver::solve


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