]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
4 years agodoxygen: extract everything 9855/head
Timo Heister [Tue, 7 Apr 2020 21:27:38 +0000 (17:27 -0400)]
doxygen: extract everything

doxygen has a bug to not extract global enums (see #7730). The only
current know option is to change the default to extract everything by
setting EXTRACT_ALL=YES.
Also add other options while we are here and enable generating
documentation for undocumented members/classes.

4 years agoMerge pull request #9849 from masterleinad/fix_tests_werror
Daniel Arndt [Tue, 7 Apr 2020 19:49:39 +0000 (15:49 -0400)]
Merge pull request #9849 from masterleinad/fix_tests_werror

Fix some warnings in tests with clang-10

4 years agoMerge pull request #9846 from kronbichler/documentation_noncontig_partitioner
Wolfgang Bangerth [Tue, 7 Apr 2020 18:18:24 +0000 (20:18 +0200)]
Merge pull request #9846 from kronbichler/documentation_noncontig_partitioner

Update documentation of NoncontiguousPartitioner

4 years agoMerge pull request #9815 from bangerth/complex-vectors
Martin Kronbichler [Tue, 7 Apr 2020 17:54:22 +0000 (19:54 +0200)]
Merge pull request #9815 from bangerth/complex-vectors

Allow outputting complex-valued vector and tensor fields

4 years agoFix unused warning 9849/head
Daniel Arndt [Tue, 7 Apr 2020 17:47:41 +0000 (13:47 -0400)]
Fix unused warning

4 years agoFix some warnings in tests with clang-10
Daniel Arndt [Tue, 7 Apr 2020 16:28:41 +0000 (12:28 -0400)]
Fix some warnings in tests with clang-10

4 years agoMerge pull request #9819 from peterrum/compute_union
Daniel Arndt [Tue, 7 Apr 2020 15:55:15 +0000 (11:55 -0400)]
Merge pull request #9819 from peterrum/compute_union

Add Utilities::MPI::compute_set_union

4 years agoMerge pull request #9718 from nfehn/parameter_handler
Wolfgang Bangerth [Tue, 7 Apr 2020 15:37:24 +0000 (17:37 +0200)]
Merge pull request #9718 from nfehn/parameter_handler

improve robustness and usability of ParameterHandler

4 years agoMerge pull request #9845 from rezarastak/doxygen_warnings_1
Wolfgang Bangerth [Tue, 7 Apr 2020 15:36:27 +0000 (17:36 +0200)]
Merge pull request #9845 from rezarastak/doxygen_warnings_1

Fix some Doxygen warnings

4 years agoMerge pull request #9831 from simonsticko/hypercube_to_bounding_box
Daniel Arndt [Tue, 7 Apr 2020 14:45:47 +0000 (10:45 -0400)]
Merge pull request #9831 from simonsticko/hypercube_to_bounding_box

Implement functionality from Hypercube on BoundingBox

4 years agoMerge pull request #9844 from masterleinad/build_debug_and_release
David Wells [Tue, 7 Apr 2020 13:39:24 +0000 (09:39 -0400)]
Merge pull request #9844 from masterleinad/build_debug_and_release

Build debug and release with Actions

4 years agoimprove usability of ParameterHandler 9718/head
Niklas Fehn [Mon, 23 Mar 2020 12:03:50 +0000 (13:03 +0100)]
improve usability of ParameterHandler

4 years agoSlightly reformulate documentation of BoundingBox 9831/head
Simon Sticko [Tue, 7 Apr 2020 13:02:05 +0000 (15:02 +0200)]
Slightly reformulate documentation of BoundingBox

Co-Authored-By: Martin Kronbichler <kronbichler@lnm.mw.tum.de>
4 years agoMerge pull request #9821 from masterleinad/remove_shift
Martin Kronbichler [Tue, 7 Apr 2020 12:44:07 +0000 (14:44 +0200)]
Merge pull request #9821 from masterleinad/remove_shift

Remove deprecated class PArpackSolver::Shift

4 years agoMerge pull request #9841 from masterleinad/convert_loops
Martin Kronbichler [Tue, 7 Apr 2020 12:28:34 +0000 (14:28 +0200)]
Merge pull request #9841 from masterleinad/convert_loops

Use more range-based for loops.

4 years agoAdd Utilities::MPI::compute_set_union 9819/head
Peter Munch [Tue, 7 Apr 2020 08:33:06 +0000 (10:33 +0200)]
Add Utilities::MPI::compute_set_union

4 years agoAdd Utilities::MPI::compute_union
Peter Munch [Sat, 4 Apr 2020 18:18:24 +0000 (20:18 +0200)]
Add Utilities::MPI::compute_union

4 years agoUpdate documentation of NoncontiguousPartitioner 9846/head
Martin Kronbichler [Tue, 7 Apr 2020 05:54:07 +0000 (07:54 +0200)]
Update documentation of NoncontiguousPartitioner

4 years agoFix some Doxygen warnings 9845/head
Reza Rastak [Tue, 7 Apr 2020 02:14:27 +0000 (19:14 -0700)]
Fix some Doxygen warnings

4 years agoMerge pull request #9842 from dangars/step62_complex_vector_output
Daniel Arndt [Tue, 7 Apr 2020 00:23:51 +0000 (20:23 -0400)]
Merge pull request #9842 from dangars/step62_complex_vector_output

Output step-62 results as a complex-valued vector

4 years agoAdd a test for complex-valued tensors. 9815/head
Wolfgang Bangerth [Sat, 4 Apr 2020 04:01:07 +0000 (22:01 -0600)]
Add a test for complex-valued tensors.

4 years agoAdd tests for complex-valued vector fields.
Wolfgang Bangerth [Fri, 3 Apr 2020 22:57:24 +0000 (16:57 -0600)]
Add tests for complex-valued vector fields.

4 years agoFix the order in which we output complex-valued vectors/tensors.
Wolfgang Bangerth [Sat, 4 Apr 2020 00:12:28 +0000 (18:12 -0600)]
Fix the order in which we output complex-valued vectors/tensors.

4 years agoRemove a comment no longer relevant.
Wolfgang Bangerth [Sat, 4 Apr 2020 00:20:32 +0000 (18:20 -0600)]
Remove a comment no longer relevant.

4 years agoUse better variable names.
Wolfgang Bangerth [Fri, 3 Apr 2020 23:03:43 +0000 (17:03 -0600)]
Use better variable names.

4 years agoMake sure DataOut exports vector/tensor data correctly for complex-valued cases.
Wolfgang Bangerth [Fri, 3 Apr 2020 22:57:05 +0000 (16:57 -0600)]
Make sure DataOut exports vector/tensor data correctly for complex-valued cases.

4 years agoBuild debug and release with Actions 9844/head
Daniel Arndt [Mon, 6 Apr 2020 21:50:40 +0000 (17:50 -0400)]
Build debug and release with Actions

4 years agoUse std::fill for std::vector<bool> 9841/head
Daniel Arndt [Mon, 6 Apr 2020 21:12:26 +0000 (17:12 -0400)]
Use std::fill for std::vector<bool>

4 years agoOutput results as a complex-valued vector 9842/head
Daniel Garcia-Sanchez [Mon, 6 Apr 2020 20:46:47 +0000 (22:46 +0200)]
Output results as a complex-valued vector

4 years agoReplace some loops
Daniel Arndt [Mon, 6 Apr 2020 17:30:26 +0000 (13:30 -0400)]
Replace some loops

4 years agoMerge pull request #9827 from kronbichler/fix_get_position_vector
Daniel Arndt [Mon, 6 Apr 2020 19:53:21 +0000 (15:53 -0400)]
Merge pull request #9827 from kronbichler/fix_get_position_vector

Fix bug in VectorTools::get_position_vector for high order mappings

4 years agoMerge pull request #9838 from jwitte08/step47
Wolfgang Bangerth [Mon, 6 Apr 2020 14:59:21 +0000 (16:59 +0200)]
Merge pull request #9838 from jwitte08/step47

step-47 - fix typos

4 years agoMerge pull request #9822 from kronbichler/improve_documentation_hyperball
Wolfgang Bangerth [Mon, 6 Apr 2020 14:50:59 +0000 (16:50 +0200)]
Merge pull request #9822 from kronbichler/improve_documentation_hyperball

Place figures for 2d/3d quarter hyper ball in same line

4 years agofix typos 9838/head
Julius Witte [Mon, 6 Apr 2020 14:07:30 +0000 (16:07 +0200)]
fix typos

4 years agoMerge pull request #9792 from dougshidong/vector_adaptor_ghosted
Luca Heltai [Mon, 6 Apr 2020 13:45:17 +0000 (15:45 +0200)]
Merge pull request #9792 from dougshidong/vector_adaptor_ghosted

Allow vector_adaptor to work on ghosted vectors.

4 years agoMerge pull request #9836 from peterrum/tpetra_doxygen
Martin Kronbichler [Mon, 6 Apr 2020 09:52:17 +0000 (11:52 +0200)]
Merge pull request #9836 from peterrum/tpetra_doxygen

Make TpetraWrappers appear in Doxygen

4 years agoMake TpetraWrappers appear in Doxygen 9836/head
Peter Munch [Mon, 6 Apr 2020 06:42:42 +0000 (08:42 +0200)]
Make TpetraWrappers appear in Doxygen

4 years agoMerge pull request #9837 from peterrum/epetra_link_update
Jean-Paul Pelteret [Mon, 6 Apr 2020 09:24:00 +0000 (11:24 +0200)]
Merge pull request #9837 from peterrum/epetra_link_update

Update Epetra link

4 years agoAdd test case by Doug Shi-Dong 9827/head
Martin Kronbichler [Mon, 6 Apr 2020 06:56:48 +0000 (08:56 +0200)]
Add test case by Doug Shi-Dong

4 years agoUpdate Epetra link 9837/head
Peter Munch [Mon, 6 Apr 2020 06:50:28 +0000 (08:50 +0200)]
Update Epetra link

4 years agoChangelog
Martin Kronbichler [Sun, 5 Apr 2020 11:45:45 +0000 (13:45 +0200)]
Changelog

4 years agoMerge pull request #9834 from tamiko/typos_1
David Wells [Mon, 6 Apr 2020 00:44:13 +0000 (20:44 -0400)]
Merge pull request #9834 from tamiko/typos_1

Step-63: Fix two typos

4 years agoMerge pull request #9803 from kronbichler/fix_hyperball_manifold_2d
David Wells [Mon, 6 Apr 2020 00:41:55 +0000 (20:41 -0400)]
Merge pull request #9803 from kronbichler/fix_hyperball_manifold_2d

Fix oversight in GridGenerator::hyper_ball in 2d

4 years agoStep-63: Fix two typos 9834/head
Matthias Maier [Mon, 6 Apr 2020 00:20:27 +0000 (19:20 -0500)]
Step-63: Fix two typos

4 years agoMerge pull request #9825 from peterrum/mpi_fix_warning
Martin Kronbichler [Sun, 5 Apr 2020 21:36:54 +0000 (23:36 +0200)]
Merge pull request #9825 from peterrum/mpi_fix_warning

Fix warning in Utilities::MPI for serial release build

4 years agoRemove class Hypercube.
Simon Sticko [Sun, 5 Apr 2020 19:16:50 +0000 (21:16 +0200)]
Remove class Hypercube.

Since it is very similar to the the BoundingBox class and the missing
functionality now has been added to BoundingBox.

4 years agoImplement functionality from Hypercube on BoundingBox.
Simon Sticko [Sun, 5 Apr 2020 19:14:54 +0000 (21:14 +0200)]
Implement functionality from Hypercube on BoundingBox.

The two classes are very similar. Implement the functionality from
Hypercube on Boundingbox so that the Hypercube class can be removed.

4 years agoFix warning in Utilities::MPI for serial release build 9825/head
Peter Munch [Sun, 5 Apr 2020 10:04:20 +0000 (12:04 +0200)]
Fix warning in Utilities::MPI for serial release build

4 years agoMerge pull request #9795 from peterrum/grid_in_fix
Martin Kronbichler [Sun, 5 Apr 2020 14:48:46 +0000 (16:48 +0200)]
Merge pull request #9795 from peterrum/grid_in_fix

Fix GridIn::read_vtk

4 years agoMerge pull request #9797 from peterrum/dofaccessor_remove_unused_function
Martin Kronbichler [Sun, 5 Apr 2020 14:48:21 +0000 (16:48 +0200)]
Merge pull request #9797 from peterrum/dofaccessor_remove_unused_function

Remove unused functions

4 years agoTest case
Martin Kronbichler [Sun, 5 Apr 2020 11:43:59 +0000 (13:43 +0200)]
Test case

4 years agoFix bug in VectorTools::get_position_vector for high order mappings
Martin Kronbichler [Sun, 5 Apr 2020 11:42:57 +0000 (13:42 +0200)]
Fix bug in VectorTools::get_position_vector for high order mappings

4 years agoFix GridIn::read_vtk 9795/head
Peter Munch [Thu, 2 Apr 2020 10:58:18 +0000 (12:58 +0200)]
Fix GridIn::read_vtk

4 years agoRemove unused function 9797/head
Peter Munch [Thu, 2 Apr 2020 14:23:20 +0000 (16:23 +0200)]
Remove unused function

4 years agoPlace figures for 2d/3d quarter hyper ball in same line 9822/head
Martin Kronbichler [Sun, 5 Apr 2020 06:38:48 +0000 (08:38 +0200)]
Place figures for 2d/3d quarter hyper ball in same line

4 years agoRemove deprecated class PArpackSolver::Shift 9821/head
Daniel Arndt [Thu, 26 Mar 2020 16:08:55 +0000 (12:08 -0400)]
Remove deprecated class PArpackSolver::Shift

4 years agoMerge pull request #9707 from peterrum/json_reduced_print
Daniel Arndt [Sun, 5 Apr 2020 00:10:07 +0000 (20:10 -0400)]
Merge pull request #9707 from peterrum/json_reduced_print

Print a reduced parameter tree for XML and JSON

4 years agoMerge pull request #9739 from nfehn/grid_tools
Martin Kronbichler [Sat, 4 Apr 2020 21:14:04 +0000 (23:14 +0200)]
Merge pull request #9739 from nfehn/grid_tools

GridTools/GridGenerator: add some functions to support dim-independent programming

4 years agoMerge pull request #9799 from bangerth/cleanup
Martin Kronbichler [Sat, 4 Apr 2020 21:12:25 +0000 (23:12 +0200)]
Merge pull request #9799 from bangerth/cleanup

Minor cleanups.

4 years agoMerge pull request #9808 from peterrum/dof_accessor_simplify_update_cell_dof_indices_...
Martin Kronbichler [Sat, 4 Apr 2020 21:12:04 +0000 (23:12 +0200)]
Merge pull request #9808 from peterrum/dof_accessor_simplify_update_cell_dof_indices_cache

Simplify DoFCellAccessorImplementation::update_cell_dof_indices_cache()

4 years agoMerge pull request #9805 from bangerth/69
Martin Kronbichler [Sat, 4 Apr 2020 21:08:54 +0000 (23:08 +0200)]
Merge pull request #9805 from bangerth/69

Make the spelling of 'add_parameter()' arguments consistent.

4 years agoMerge pull request #9816 from tjhei/boost_guard2
Martin Kronbichler [Sat, 4 Apr 2020 21:08:19 +0000 (23:08 +0200)]
Merge pull request #9816 from tjhei/boost_guard2

more boost warning guards

4 years agoFix oversight in GridGenerator::hyper_ball in 2d 9803/head
Martin Kronbichler [Thu, 2 Apr 2020 20:33:00 +0000 (22:33 +0200)]
Fix oversight in GridGenerator::hyper_ball in 2d

4 years agoMerge pull request #9818 from bangerth/doxygen
Timo Heister [Sat, 4 Apr 2020 18:38:08 +0000 (14:38 -0400)]
Merge pull request #9818 from bangerth/doxygen

A few doxygen-related fixes.

4 years agoA few doxygen-related fixes. 9818/head
Wolfgang Bangerth [Sat, 4 Apr 2020 18:09:15 +0000 (12:09 -0600)]
A few doxygen-related fixes.

4 years agoMerge pull request #8824 from rezarastak/discrete_time
Wolfgang Bangerth [Sat, 4 Apr 2020 17:50:23 +0000 (19:50 +0200)]
Merge pull request #8824 from rezarastak/discrete_time

The class DiscreteTime implemented.

4 years agoUse American English spelling. 9805/head
Wolfgang Bangerth [Sat, 4 Apr 2020 17:03:26 +0000 (11:03 -0600)]
Use American English spelling.

4 years agoAlso update the .prm file.
Wolfgang Bangerth [Sat, 4 Apr 2020 17:03:07 +0000 (11:03 -0600)]
Also update the .prm file.

4 years agoMake the spelling of 'add_parameter()' arguments consistent.
Wolfgang Bangerth [Fri, 3 Apr 2020 02:12:50 +0000 (20:12 -0600)]
Make the spelling of 'add_parameter()' arguments consistent.

Specifically, always capitalize the first letter. Right now, it's inconsistent.

4 years agoMinor cleanups. 9799/head
Wolfgang Bangerth [Thu, 2 Apr 2020 16:08:38 +0000 (10:08 -0600)]
Minor cleanups.

4 years agoMerge pull request #9811 from peterrum/dofhandler_instantiation
Wolfgang Bangerth [Sat, 4 Apr 2020 15:32:10 +0000 (17:32 +0200)]
Merge pull request #9811 from peterrum/dofhandler_instantiation

Simplify instantiation of DoFHandler and hp::DoFHandler

4 years agomore boost warning guards 9816/head
Timo Heister [Sat, 4 Apr 2020 15:20:01 +0000 (11:20 -0400)]
more boost warning guards

4 years agoMerge pull request #9793 from kronbichler/mapping_q_quad_pts
Daniel Arndt [Sat, 4 Apr 2020 13:31:09 +0000 (09:31 -0400)]
Merge pull request #9793 from kronbichler/mapping_q_quad_pts

MappingQGeneric: Copy mapping support points to quadrature points

4 years agoMerge pull request #9813 from bangerth/cleanups-2
Daniel Arndt [Sat, 4 Apr 2020 13:26:50 +0000 (09:26 -0400)]
Merge pull request #9813 from bangerth/cleanups-2

Simplify some code by using a range-based for loop.

4 years agoMerge pull request #9636 from tamiko/reintroduce_aio
Daniel Arndt [Sat, 4 Apr 2020 13:23:21 +0000 (09:23 -0400)]
Merge pull request #9636 from tamiko/reintroduce_aio

Step-69: Introduce asynchronous IO mechanism

4 years agoMerge pull request #9814 from bangerth/assertion
Daniel Arndt [Sat, 4 Apr 2020 13:06:25 +0000 (09:06 -0400)]
Merge pull request #9814 from bangerth/assertion

Add a missing assertion.

4 years agoThe class DiscreteTime implemented. 8824/head
Reza Rastak [Fri, 20 Sep 2019 22:55:20 +0000 (15:55 -0700)]
The class DiscreteTime implemented.

4 years agoadd functions to support dim-independent programming 9739/head
Niklas Fehn [Thu, 26 Mar 2020 13:10:52 +0000 (14:10 +0100)]
add functions to support dim-independent programming

4 years agoMerge pull request #9806 from bangerth/69-2
Martin Kronbichler [Sat, 4 Apr 2020 06:55:00 +0000 (08:55 +0200)]
Merge pull request #9806 from bangerth/69-2

Use AE spelling 'disk' instead of BE spelling 'disc'.

4 years agoSimplify DoFCellAccessorImplementation::Implementation::update_cell_dof_indices_cache() 9808/head
Peter Munch [Fri, 3 Apr 2020 12:52:11 +0000 (14:52 +0200)]
Simplify DoFCellAccessorImplementation::Implementation::update_cell_dof_indices_cache()

4 years agoMerge pull request #9810 from peterrum/dofhandler_blockinfo
Martin Kronbichler [Sat, 4 Apr 2020 06:25:48 +0000 (08:25 +0200)]
Merge pull request #9810 from peterrum/dofhandler_blockinfo

Add functions accepting hp::DoFHandler to BlockInfo

4 years agofix documentation 9636/head
Matthias Maier [Fri, 3 Apr 2020 03:54:23 +0000 (22:54 -0500)]
fix documentation

4 years agorefactor to use shared pointer
Matthias Maier [Fri, 3 Apr 2020 03:35:45 +0000 (22:35 -0500)]
refactor to use shared pointer

4 years agoRefactor output thread; only perform IO asynchronously
Matthias Maier [Thu, 2 Apr 2020 22:14:30 +0000 (17:14 -0500)]
Refactor output thread; only perform IO asynchronously

4 years agoadd an configuration option
Matthias Maier [Thu, 2 Apr 2020 21:21:10 +0000 (16:21 -0500)]
add an configuration option

4 years agoRevert "remove asynchronous IO mechanism"
Matthias Maier [Sat, 7 Mar 2020 20:19:59 +0000 (14:19 -0600)]
Revert "remove asynchronous IO mechanism"

This reverts commit 7980483d1654923c44f67491699b82e6b5ce4e51.

4 years agoMerge pull request #9796 from kronbichler/improve_quarter_hyper_ball
Daniel Arndt [Sat, 4 Apr 2020 04:24:02 +0000 (00:24 -0400)]
Merge pull request #9796 from kronbichler/improve_quarter_hyper_ball

Improve mesh quality of quarter hyper ball

4 years agoUse AE spelling 'disk' instead of BE spelling 'disc'. 9806/head
Wolfgang Bangerth [Fri, 3 Apr 2020 02:16:33 +0000 (20:16 -0600)]
Use AE spelling 'disk' instead of BE spelling 'disc'.

4 years agoMerge pull request #9801 from masterleinad/remove_pointer_matrix
Daniel Arndt [Sat, 4 Apr 2020 04:04:34 +0000 (00:04 -0400)]
Merge pull request #9801 from masterleinad/remove_pointer_matrix

Remove PointerMatrix*

4 years agoAdd a missing assertion. 9814/head
Wolfgang Bangerth [Sat, 4 Apr 2020 04:02:43 +0000 (22:02 -0600)]
Add a missing assertion.

4 years agoSimplify some code by using a range-based for loop. 9813/head
Wolfgang Bangerth [Fri, 3 Apr 2020 23:28:38 +0000 (17:28 -0600)]
Simplify some code by using a range-based for loop.

4 years agoSimplify instantiation of DoFHandler and hp::DoFHandler 9811/head
Peter Munch [Fri, 3 Apr 2020 21:46:50 +0000 (23:46 +0200)]
Simplify instantiation of DoFHandler and hp::DoFHandler

4 years agoAdd functions accepting hp::DoFHandler to BlockInfo 9810/head
Peter Munch [Fri, 3 Apr 2020 21:35:19 +0000 (23:35 +0200)]
Add functions accepting hp::DoFHandler to BlockInfo

4 years agoMerge pull request #9758 from peterrum/parallel_namespace_problem
Daniel Arndt [Fri, 3 Apr 2020 21:03:45 +0000 (17:03 -0400)]
Merge pull request #9758 from peterrum/parallel_namespace_problem

Explicitly spell dealii::parallel in multiple places

4 years agoRemove PointerMatrix* 9801/head
Daniel Arndt [Wed, 1 Apr 2020 18:54:51 +0000 (14:54 -0400)]
Remove PointerMatrix*

4 years agoChangelog 9796/head
Martin Kronbichler [Thu, 2 Apr 2020 16:42:19 +0000 (18:42 +0200)]
Changelog

4 years agoAdd pictures of new mesh
Martin Kronbichler [Thu, 2 Apr 2020 16:42:08 +0000 (18:42 +0200)]
Add pictures of new mesh

4 years agoImprove mesh quality of quarter hyper ball
Martin Kronbichler [Thu, 2 Apr 2020 12:20:44 +0000 (14:20 +0200)]
Improve mesh quality of quarter hyper ball

4 years agoMerge pull request #9787 from luca-heltai/base64-encode-decode
Daniel Arndt [Fri, 3 Apr 2020 19:00:36 +0000 (15:00 -0400)]
Merge pull request #9787 from luca-heltai/base64-encode-decode

Encode and decode Base64 format.

4 years agoMerge pull request #9800 from masterleinad/minimize_boost_geometry
Daniel Arndt [Fri, 3 Apr 2020 16:58:03 +0000 (12:58 -0400)]
Merge pull request #9800 from masterleinad/minimize_boost_geometry

Minimize boost/geometry.h includes


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