]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
4 years agofix dof_accessor warning
Timo Heister [Sat, 1 Aug 2020 19:08:25 +0000 (15:08 -0400)]
fix dof_accessor warning

fixes:
```
/jenkins/workspace/dealii_PR-10786/include/deal.II/base/exceptions.h:1414:72:
error: ‘fe_index_’ may be used uninitialized in this function [-Werror
=maybe-uninitialized]
/jenkins/workspace/dealii_PR-10786/include/deal.II/dofs/dof_accessor.templates.h:284:22:
note: ‘fe_index_’ was declared here
```

4 years agoMerge pull request #10785 from drwells/fix-mpi-detect
Timo Heister [Sat, 1 Aug 2020 16:53:19 +0000 (12:53 -0400)]
Merge pull request #10785 from drwells/fix-mpi-detect

Fix MPIEXEC detection again.

4 years agoMerge pull request #10787 from tjhei/jenkinsfile_no_tabs
Peter Munch [Sat, 1 Aug 2020 15:15:57 +0000 (17:15 +0200)]
Merge pull request #10787 from tjhei/jenkinsfile_no_tabs

Jenkinsfile: convert tabs to spaces

4 years agoJenkinsfile: convert tabs to spaces 10787/head
Timo Heister [Sat, 1 Aug 2020 14:52:26 +0000 (10:52 -0400)]
Jenkinsfile: convert tabs to spaces

4 years agoMerge pull request #10776 from peterrum/dofhandler_reservespace_3d
David Wells [Sat, 1 Aug 2020 14:30:52 +0000 (10:30 -0400)]
Merge pull request #10776 from peterrum/dofhandler_reservespace_3d

Refactor DoFHandlerImplementation::reserve_space for 3D

4 years agoMerge pull request #10752 from bangerth/bicgstab
Peter Munch [Sat, 1 Aug 2020 13:30:40 +0000 (15:30 +0200)]
Merge pull request #10752 from bangerth/bicgstab

Improve memory behavior of the BiCGStab solver.

4 years agoFix MPIEXEC detection again. 10785/head
David Wells [Sat, 1 Aug 2020 12:26:43 +0000 (08:26 -0400)]
Fix MPIEXEC detection again.

We should check the value deal.II finally stores - other MPI variables are not
necessarily set at this point.

4 years agoMerge pull request #10773 from tjhei/ci_indent_checkout_depth
Peter Munch [Sat, 1 Aug 2020 13:29:51 +0000 (15:29 +0200)]
Merge pull request #10773 from tjhei/ci_indent_checkout_depth

CI: change git depth for indent worker

4 years agoMerge pull request #10780 from peterrum/fe_face_vectors
David Wells [Sat, 1 Aug 2020 13:06:17 +0000 (09:06 -0400)]
Merge pull request #10780 from peterrum/fe_face_vectors

Convert all face-related data structures of FiniteElement to vectors

4 years agoMerge pull request #10779 from peterrum/fe_faceno
David Wells [Sat, 1 Aug 2020 12:50:42 +0000 (08:50 -0400)]
Merge pull request #10779 from peterrum/fe_faceno

Add face_no to methods of FiniteElements

4 years agoMerge pull request #10757 from peterrum/simplex_github_acctions
Peter Munch [Sat, 1 Aug 2020 08:16:28 +0000 (10:16 +0200)]
Merge pull request #10757 from peterrum/simplex_github_acctions

CI: add tester for simplex tests

4 years agoMerge pull request #10774 from tjhei/clang_warnings
Wolfgang Bangerth [Fri, 31 Jul 2020 23:19:51 +0000 (17:19 -0600)]
Merge pull request #10774 from tjhei/clang_warnings

suppress boost warnings

4 years agoImprove memory behavior of the BiCGStab solver. 10752/head
Wolfgang Bangerth [Sat, 25 Jul 2020 23:16:15 +0000 (17:16 -0600)]
Improve memory behavior of the BiCGStab solver.

4 years agoMerge pull request #10734 from drwells/check-mpiexec
Wolfgang Bangerth [Fri, 31 Jul 2020 22:49:37 +0000 (16:49 -0600)]
Merge pull request #10734 from drwells/check-mpiexec

Check that MPIEXEC_EXECUTABLE is available in the test suite.

4 years agoConvert all face-related data structures of FiniteElement to vectors 10780/head
Peter Munch [Fri, 31 Jul 2020 21:55:57 +0000 (23:55 +0200)]
Convert all face-related data structures of FiniteElement to vectors

4 years agoMerge pull request #10769 from peterrum/simplex_grid_generator_namespace
Wolfgang Bangerth [Fri, 31 Jul 2020 22:13:08 +0000 (16:13 -0600)]
Merge pull request #10769 from peterrum/simplex_grid_generator_namespace

Fix conflict with Simplex::GridGenerator

4 years agoAdd face_no to methods of FiniteElements 10779/head
Peter Munch [Fri, 31 Jul 2020 21:50:47 +0000 (23:50 +0200)]
Add face_no to methods of FiniteElements

4 years agoRefactor DoFHandlerImplementation::reserve_space for 3D 10776/head
Peter Munch [Fri, 31 Jul 2020 18:34:11 +0000 (20:34 +0200)]
Refactor DoFHandlerImplementation::reserve_space for 3D

4 years agoMerge pull request #10653 from dangars/remove_unused_tests
David Wells [Fri, 31 Jul 2020 17:51:51 +0000 (13:51 -0400)]
Merge pull request #10653 from dangars/remove_unused_tests

Remove unused tests

4 years agosuppress boost warnings 10774/head
Timo Heister [Fri, 31 Jul 2020 17:34:30 +0000 (13:34 -0400)]
suppress boost warnings

noticed when compiling with clang10 and bundled boost

4 years agoMerge pull request #10771 from zjiaqi2018/step-47_typos
David Wells [Fri, 31 Jul 2020 17:21:23 +0000 (13:21 -0400)]
Merge pull request #10771 from zjiaqi2018/step-47_typos

fix typos in step 47

4 years agoMerge pull request #10770 from peterrum/vectortools_interpolate
David Wells [Fri, 31 Jul 2020 17:19:52 +0000 (13:19 -0400)]
Merge pull request #10770 from peterrum/vectortools_interpolate

Enable VectorTools::interpolate for hp::MappingCollection

4 years agoAdd comments 10757/head
Peter Munch [Fri, 31 Jul 2020 16:31:36 +0000 (18:31 +0200)]
Add comments

4 years agoUpdate .github/workflows/indent.yml 10773/head
Timo Heister [Fri, 31 Jul 2020 15:25:28 +0000 (11:25 -0400)]
Update .github/workflows/indent.yml

Co-authored-by: Daniel Arndt <arndtd@ornl.gov>
4 years agoone more typo 10771/head
Jiaqi Zhang [Fri, 31 Jul 2020 14:52:18 +0000 (10:52 -0400)]
one more typo

4 years agomore typos
Jiaqi Zhang [Fri, 31 Jul 2020 14:47:17 +0000 (10:47 -0400)]
more typos

4 years agofix typos in step-47
Jiaqi Zhang [Fri, 31 Jul 2020 00:02:56 +0000 (20:02 -0400)]
fix typos in step-47

4 years agoCI: change git depth for indent worker
Timo Heister [Fri, 31 Jul 2020 14:11:00 +0000 (10:11 -0400)]
CI: change git depth for indent worker

By default, github actions do a git clone with depth=1. That does not
allow our indent script to check the commits for authorship correctly.

4 years agoTest simplex in osx-parallel64
Peter Munch [Tue, 28 Jul 2020 09:26:53 +0000 (11:26 +0200)]
Test simplex in osx-parallel64

4 years agoMerge pull request #10772 from bangerth/qt
Peter Munch [Fri, 31 Jul 2020 12:49:47 +0000 (14:49 +0200)]
Merge pull request #10772 from bangerth/qt

Update an error text.

4 years agoMerge pull request #10768 from masterleinad/improve_error_message
Peter Munch [Fri, 31 Jul 2020 12:49:19 +0000 (14:49 +0200)]
Merge pull request #10768 from masterleinad/improve_error_message

Improve DataOutDoFData error message ExcInvalidVectorSize

4 years agoFix confilct with Simplex::GridGenerator 10769/head
Peter Munch [Thu, 30 Jul 2020 17:57:41 +0000 (19:57 +0200)]
Fix confilct with Simplex::GridGenerator

4 years agoEnabel VectorTools::interpolate for hp::MappingCollection 10770/head
Peter Munch [Thu, 30 Jul 2020 19:04:36 +0000 (21:04 +0200)]
Enabel VectorTools::interpolate for hp::MappingCollection

4 years agoUpdate an error text. 10772/head
Wolfgang Bangerth [Thu, 30 Jul 2020 21:08:02 +0000 (15:08 -0600)]
Update an error text.

4 years agoImprove DataOutDoFData error message ExcInvalidVectorSize 10768/head
Daniel Arndt [Thu, 30 Jul 2020 12:48:27 +0000 (08:48 -0400)]
Improve DataOutDoFData error message ExcInvalidVectorSize

4 years agoMerge pull request #10760 from kronbichler/fix_transfer_ghosts
Daniel Arndt [Wed, 29 Jul 2020 18:45:47 +0000 (14:45 -0400)]
Merge pull request #10760 from kronbichler/fix_transfer_ghosts

Do not update ghost values in MGTransferMatrixFree::prolongate

4 years agoMerge pull request #10761 from kronbichler/step-67-doc
Daniel Arndt [Wed, 29 Jul 2020 15:44:44 +0000 (11:44 -0400)]
Merge pull request #10761 from kronbichler/step-67-doc

[step-67] Close a brace in introduction

4 years ago[step-67] Close a brace in introduction 10761/head
Martin Kronbichler [Wed, 29 Jul 2020 15:33:30 +0000 (17:33 +0200)]
[step-67] Close a brace in introduction

4 years agoDo not update ghost values in MGTransferMatrixFree::prolongate 10760/head
Martin Kronbichler [Wed, 29 Jul 2020 15:20:08 +0000 (17:20 +0200)]
Do not update ghost values in MGTransferMatrixFree::prolongate

4 years agoMerge pull request #10759 from tjhei/step47-typo
Daniel Arndt [Wed, 29 Jul 2020 15:01:04 +0000 (11:01 -0400)]
Merge pull request #10759 from tjhei/step47-typo

delete a word in step-47

4 years agodelete a word in step-47 10759/head
Timo Heister [Wed, 29 Jul 2020 14:29:09 +0000 (10:29 -0400)]
delete a word in step-47

4 years agoMerge pull request #10748 from peterrum/simplex_read_vtk
Luca Heltai [Wed, 29 Jul 2020 08:38:45 +0000 (10:38 +0200)]
Merge pull request #10748 from peterrum/simplex_read_vtk

GridIn::read_vtk() for simplex meshes

4 years agoMerge pull request #10727 from DanielPaukner/tet_read_msh
Luca Heltai [Tue, 28 Jul 2020 12:52:01 +0000 (14:52 +0200)]
Merge pull request #10727 from DanielPaukner/tet_read_msh

GridIn::read_msh() now supports triangular and tetrahedral elements

4 years agoMerge pull request #10659 from peterrum/mapping_p
Martin Kronbichler [Tue, 28 Jul 2020 08:53:07 +0000 (10:53 +0200)]
Merge pull request #10659 from peterrum/mapping_p

Introduce MappingFE

4 years agoMerge pull request #10754 from peterrum/connectivity_assert
Daniel Arndt [Mon, 27 Jul 2020 16:56:56 +0000 (12:56 -0400)]
Merge pull request #10754 from peterrum/connectivity_assert

Add assert to connectivity.h

4 years agoAdd test for the hp variant of project_boundary_values_curl_conforming_l2() 10653/head
Daniel Garcia-Sanchez [Mon, 27 Jul 2020 15:46:49 +0000 (17:46 +0200)]
Add test for the hp variant of project_boundary_values_curl_conforming_l2()

4 years agoMerge pull request #10646 from peterrum/simplex_polynomial_fe_mapping
David Wells [Mon, 27 Jul 2020 14:34:12 +0000 (10:34 -0400)]
Merge pull request #10646 from peterrum/simplex_polynomial_fe_mapping

Add Simplex::FE_P and Simplex::FE_DGP

4 years agoMerge pull request #10753 from peterrum/hp_fix_reserve_mermory
David Wells [Mon, 27 Jul 2020 13:57:33 +0000 (09:57 -0400)]
Merge pull request #10753 from peterrum/hp_fix_reserve_mermory

Fix memory reservation of hp::DoFHandler

4 years agoIntoduce MappingFE 10659/head
Peter Munch [Fri, 3 Jul 2020 14:44:55 +0000 (16:44 +0200)]
Intoduce MappingFE

4 years agoAdd assert to connectivity.h 10754/head
Peter Munch [Mon, 27 Jul 2020 12:14:06 +0000 (14:14 +0200)]
Add assert to connectivity.h

4 years agoFix memory reservation of hp::DoFHandler 10753/head
Peter Munch [Mon, 27 Jul 2020 11:48:55 +0000 (13:48 +0200)]
Fix memory reservation of hp::DoFHandler

4 years agoMerge pull request #10741 from peterrum/process_object
Martin Kronbichler [Mon, 27 Jul 2020 11:18:03 +0000 (13:18 +0200)]
Merge pull request #10741 from peterrum/process_object

Generalize process_dof_indices()

4 years agominor changes to add recommendations 10727/head
Daniel Paukner [Mon, 27 Jul 2020 09:32:10 +0000 (11:32 +0200)]
minor changes to add recommendations

4 years agoAdd Simplex::FE_P and Simplex::FE_DGP 10646/head
Peter Munch [Thu, 2 Jul 2020 06:24:13 +0000 (08:24 +0200)]
Add Simplex::FE_P and Simplex::FE_DGP

4 years agoGridIn::read_vtk() for simplex meshes 10748/head
Peter Munch [Thu, 23 Jul 2020 19:28:26 +0000 (21:28 +0200)]
GridIn::read_vtk() for simplex meshes

4 years agoMerge pull request #10745 from tjhei/enable_missing_braces
Daniel Arndt [Sat, 25 Jul 2020 04:15:05 +0000 (00:15 -0400)]
Merge pull request #10745 from tjhei/enable_missing_braces

4 years agoMerge pull request #10751 from Rombur/fix_cuda
Daniel Arndt [Fri, 24 Jul 2020 22:00:36 +0000 (18:00 -0400)]
Merge pull request #10751 from Rombur/fix_cuda

Fix compilation when CUDA is enable

4 years agoFix compilation when CUDA is enable 10751/head
Bruno Turcksin [Fri, 24 Jul 2020 18:19:13 +0000 (18:19 +0000)]
Fix compilation when CUDA is enable

4 years agoMerge pull request #10724 from philm001/master
Daniel Arndt [Fri, 24 Jul 2020 03:14:59 +0000 (23:14 -0400)]
Merge pull request #10724 from philm001/master

4 years agoGeneralize process_dof_indices() 10741/head
Peter Munch [Tue, 21 Jul 2020 11:03:00 +0000 (13:03 +0200)]
Generalize process_dof_indices()

4 years agofix tests 10745/head
Timo Heister [Thu, 23 Jul 2020 18:27:28 +0000 (14:27 -0400)]
fix tests

4 years agosort alphabetically
Timo Heister [Thu, 23 Jul 2020 18:20:58 +0000 (14:20 -0400)]
sort alphabetically

4 years agoRemove unused tests
Daniel Garcia-Sanchez [Thu, 23 Jul 2020 18:00:12 +0000 (20:00 +0200)]
Remove unused tests

4 years agoAdded in pre-processor check to see if signals is already defined. If so, alert the... 10724/head
Phillip Mobley [Thu, 23 Jul 2020 03:00:56 +0000 (23:00 -0400)]
Added in pre-processor check to see if signals is already defined. If so, alert the user with a potential fix

4 years agoupdate CI
Timo Heister [Thu, 23 Jul 2020 14:13:05 +0000 (10:13 -0400)]
update CI

4 years agoenable -Wmissing-braces if supported
Timo Heister [Thu, 23 Jul 2020 13:54:54 +0000 (09:54 -0400)]
enable -Wmissing-braces if supported

follow-up to #10743

4 years agoMerge pull request #10743 from peterrum/missing-braces
Timo Heister [Thu, 23 Jul 2020 13:47:17 +0000 (09:47 -0400)]
Merge pull request #10743 from peterrum/missing-braces

Add -Wmissing-braces to linux test

4 years agoMerge pull request #10744 from peterrum/fix_reference
Daniel Arndt [Thu, 23 Jul 2020 12:56:19 +0000 (08:56 -0400)]
Merge pull request #10744 from peterrum/fix_reference

Fix reference

4 years agoFix warnings 10743/head
Peter Munch [Thu, 23 Jul 2020 08:56:19 +0000 (10:56 +0200)]
Fix warnings

4 years agoFix reference 10744/head
Peter Munch [Thu, 23 Jul 2020 08:37:53 +0000 (10:37 +0200)]
Fix reference

4 years agoAdd -Wmissing-braces to linux test
Peter Munch [Wed, 22 Jul 2020 15:01:32 +0000 (17:01 +0200)]
Add -Wmissing-braces to linux test

4 years agoMerge pull request #10742 from peterrum/simplex_bracket
Martin Kronbichler [Thu, 23 Jul 2020 07:54:51 +0000 (09:54 +0200)]
Merge pull request #10742 from peterrum/simplex_bracket

Add missing brackets

4 years agoMerge pull request #10730 from peterrum/face_to_cell_index
Martin Kronbichler [Thu, 23 Jul 2020 07:54:15 +0000 (09:54 +0200)]
Merge pull request #10730 from peterrum/face_to_cell_index

Generalize FiniteElement::face_to_cell_index

4 years agoMerge pull request #10722 from peterrum/qprojection_simplex
Daniel Arndt [Wed, 22 Jul 2020 21:07:08 +0000 (17:07 -0400)]
Merge pull request #10722 from peterrum/qprojection_simplex

Extend QProjector for simplex

4 years agoAdd missing bracket 10742/head
Peter Munch [Wed, 22 Jul 2020 14:56:59 +0000 (16:56 +0200)]
Add missing bracket

4 years agoExtend QProjector for simplex 10722/head
Peter Munch [Sun, 19 Jul 2020 15:43:58 +0000 (17:43 +0200)]
Extend QProjector for simplex

4 years agoMerge pull request #10720 from peterrum/qprojection
Martin Kronbichler [Wed, 22 Jul 2020 18:59:32 +0000 (20:59 +0200)]
Merge pull request #10720 from peterrum/qprojection

Pass ReferenceCell::Type to QProjection

4 years agoCheck that MPIEXEC_EXECUTABLE is available in the test suite. 10734/head
David Wells [Tue, 21 Jul 2020 14:13:23 +0000 (10:13 -0400)]
Check that MPIEXEC_EXECUTABLE is available in the test suite.

4 years agoMerge pull request #10732 from peterrum/get_face_connectivity_of_cells
Martin Kronbichler [Tue, 21 Jul 2020 08:59:03 +0000 (10:59 +0200)]
Merge pull request #10732 from peterrum/get_face_connectivity_of_cells

Simplify GridTools::get_face_connectivity_of_cells

4 years agoIntoduce ReferenceCell in QProjector 10720/head
Peter Munch [Sat, 18 Jul 2020 20:20:46 +0000 (22:20 +0200)]
Intoduce ReferenceCell in QProjector

4 years agoMerge pull request #10723 from tjhei/periodic_smoothen_hang_fix
Martin Kronbichler [Tue, 21 Jul 2020 08:44:25 +0000 (10:44 +0200)]
Merge pull request #10723 from tjhei/periodic_smoothen_hang_fix

fix hang in periodic mesh smoothing flag

4 years agoMerge pull request #10729 from drwells/dtor-warning
Peter Munch [Tue, 21 Jul 2020 07:02:59 +0000 (09:02 +0200)]
Merge pull request #10729 from drwells/dtor-warning

Fix a warning about virtual destructors and virtual functions.

4 years agoSimplify GridTools::get_face_connectivity_of_cells 10732/head
Peter Munch [Tue, 21 Jul 2020 06:58:23 +0000 (08:58 +0200)]
Simplify GridTools::get_face_connectivity_of_cells

4 years agoMerge pull request #10725 from peterrum/simplex_cellmeasure_diameter
David Wells [Tue, 21 Jul 2020 03:00:55 +0000 (23:00 -0400)]
Merge pull request #10725 from peterrum/simplex_cellmeasure_diameter

Implement TriaAccessor::measure() and ::diameter() for simplex

4 years agoGridIn::read_msh() now supports triangular and tetrahedral elements
Daniel Paukner [Tue, 14 Jul 2020 12:41:46 +0000 (14:41 +0200)]
GridIn::read_msh() now supports triangular and tetrahedral elements

4 years agoGeneralize FiniteElement::face_to_cell_index 10730/head
Peter Munch [Mon, 20 Jul 2020 16:36:37 +0000 (18:36 +0200)]
Generalize FiniteElement::face_to_cell_index

4 years agoFix a warning about virtual destructors and virtual functions. 10729/head
David Wells [Mon, 20 Jul 2020 15:41:31 +0000 (11:41 -0400)]
Fix a warning about virtual destructors and virtual functions.

4 years agoMerge pull request #10726 from peterrum/fetools_compositing_multiply_dof_numbers
David Wells [Mon, 20 Jul 2020 15:49:05 +0000 (11:49 -0400)]
Merge pull request #10726 from peterrum/fetools_compositing_multiply_dof_numbers

Generalize FETools::Compositing::multiply_dof_numbers

4 years agoupdate comment 10723/head
Timo Heister [Mon, 20 Jul 2020 15:23:24 +0000 (15:23 +0000)]
update comment

4 years agoadd test
Timo Heister [Sun, 19 Jul 2020 16:37:35 +0000 (12:37 -0400)]
add test

4 years agoMerge pull request #10716 from peterrum/set_get_mg_dof_indices
Martin Kronbichler [Mon, 20 Jul 2020 14:21:53 +0000 (16:21 +0200)]
Merge pull request #10716 from peterrum/set_get_mg_dof_indices

Unitfy set/get_dof_indices() and set/get_mg_dof_indices()

4 years agoMerge pull request #10718 from peterrum/gi_fe_tools
Martin Kronbichler [Mon, 20 Jul 2020 14:21:36 +0000 (16:21 +0200)]
Merge pull request #10718 from peterrum/gi_fe_tools

Remove many GeometryInfos from fe_tools.templates.h

4 years agoMerge pull request #10708 from peterrum/data_out_mapping_collection
Martin Kronbichler [Mon, 20 Jul 2020 14:21:09 +0000 (16:21 +0200)]
Merge pull request #10708 from peterrum/data_out_mapping_collection

Accept MappingCollection in DataOut::build_patches()

4 years agoMerge pull request #10621 from rezarastak/set_time_step_size
David Wells [Mon, 20 Jul 2020 14:07:17 +0000 (10:07 -0400)]
Merge pull request #10621 from rezarastak/set_time_step_size

DiscreteTime::set_next_step_size() added

4 years agoMerge pull request #10728 from peterrum/eliminate_refined_inner_islands_typo
Luca Heltai [Mon, 20 Jul 2020 13:46:49 +0000 (15:46 +0200)]
Merge pull request #10728 from peterrum/eliminate_refined_inner_islands_typo

Fix typo

4 years agoFix typo 10728/head
Peter Munch [Mon, 20 Jul 2020 12:42:04 +0000 (14:42 +0200)]
Fix typo

4 years agoGeneralize FETools::Compositing::multiply_dof_numbers 10726/head
Peter Munch [Mon, 20 Jul 2020 10:49:32 +0000 (12:49 +0200)]
Generalize FETools::Compositing::multiply_dof_numbers

4 years agoImplement TriaAccessor::measure() and TriaAccessor::diameter() for simplex 10725/head
Peter Munch [Mon, 20 Jul 2020 10:30:26 +0000 (12:30 +0200)]
Implement TriaAccessor::measure() and TriaAccessor::diameter() for simplex

4 years agoDiscreteTime::set_next_step_size() added 10621/head
Reza Rastak [Sat, 27 Jun 2020 22:48:31 +0000 (15:48 -0700)]
DiscreteTime::set_next_step_size() added

4 years agofix hang in periodic mesh smoothing flag
Timo Heister [Sun, 19 Jul 2020 16:35:28 +0000 (12:35 -0400)]
fix hang in periodic mesh smoothing flag

The mesh smoothing flag eliminate_refined_boundary_islands creates an
infinite loop if it detects such a cell at a periodic boundary that
requires refinement due to the periodic 2:1 rule.
Work around this by not treating cells at periodic boundaries as
"refined boundary islands".


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