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kanschat [Sun, 9 Dec 2012 11:01:53 +0000 (11:01 +0000)]

add charset

git-svn-id: https://svn.dealii.org/trunk@27787 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sun, 9 Dec 2012 10:06:32 +0000 (10:06 +0000)]

ConstraintMatrix can perform distribute_local_to_global also in non-closed form as long as there are no constraints without any errors (this enables the use of a ConstraintMatrix dummy when one wants to more quickly write into sparse matrices).

git-svn-id: https://svn.dealii.org/trunk@27786 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sun, 9 Dec 2012 09:57:03 +0000 (09:57 +0000)]

One more reindentation/refill of comments.

git-svn-id: https://svn.dealii.org/trunk@27785 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sun, 9 Dec 2012 09:56:21 +0000 (09:56 +0000)]

Small update in comment.

git-svn-id: https://svn.dealii.org/trunk@27784 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sun, 9 Dec 2012 09:55:15 +0000 (09:55 +0000)]

Reindent/refill comments in a few files to improve readability.

git-svn-id: https://svn.dealii.org/trunk@27783 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 8 Dec 2012 19:54:35 +0000 (19:54 +0000)]

Add operator!=.

git-svn-id: https://svn.dealii.org/trunk@27782 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sat, 8 Dec 2012 19:09:01 +0000 (19:09 +0000)]

add a note

git-svn-id: https://svn.dealii.org/trunk@27781 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sat, 8 Dec 2012 18:35:14 +0000 (18:35 +0000)]

missing properties

git-svn-id: https://svn.dealii.org/trunk@27780 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 7 Dec 2012 19:55:47 +0000 (19:55 +0000)]

Doc updates.

git-svn-id: https://svn.dealii.org/trunk@27779 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 7 Dec 2012 19:55:13 +0000 (19:55 +0000)]

Minor doc updates.

git-svn-id: https://svn.dealii.org/trunk@27778 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 7 Dec 2012 09:46:13 +0000 (09:46 +0000)]

Update documentation.

git-svn-id: https://svn.dealii.org/trunk@27777 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 7 Dec 2012 09:07:10 +0000 (09:07 +0000)]

Improve comments. Improve check for over-/underflow in l2_norm slightly.

git-svn-id: https://svn.dealii.org/trunk@27776 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Thu, 6 Dec 2012 14:14:07 +0000 (14:14 +0000)]

Revised get_function_xxx methods: Put the evaluation part into separate functions. This makes code simpler as several user methods can use the same implementation. Also, we avoid to recompile them for _every_ global VectorType with exactly the same content. This speeds up compilation of fe_values.o by about a factor 2.

git-svn-id: https://svn.dealii.org/trunk@27775 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Thu, 6 Dec 2012 07:45:45 +0000 (07:45 +0000)]

Replace old repository links

git-svn-id: https://svn.dealii.org/trunk@27774 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 5 Dec 2012 21:11:38 +0000 (21:11 +0000)]

Move inline functions to where they should be.

git-svn-id: https://svn.dealii.org/trunk@27773 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 5 Dec 2012 17:27:56 +0000 (17:27 +0000)]

update publication

git-svn-id: https://svn.dealii.org/trunk@27767 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 4 Dec 2012 22:46:55 +0000 (22:46 +0000)]

Add a test for GeometryInfo<dim>::face_to_cell_vertices and face_to_cell_lines

git-svn-id: https://svn.dealii.org/trunk@27758 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 4 Dec 2012 22:46:53 +0000 (22:46 +0000)]

Bugfix: Implement correct return values for ->face_flip and ->face_rotation in 1d and 2d

This fixes a regression introduced with r27714 which made
GeometryInfo<2>::child_cell_on_face face_flip aware in 2d.

git-svn-id: https://svn.dealii.org/trunk@27757 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Tue, 4 Dec 2012 17:56:36 +0000 (17:56 +0000)]

more big output files removed

git-svn-id: https://svn.dealii.org/trunk@27756 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Tue, 4 Dec 2012 17:42:19 +0000 (17:42 +0000)]

remove large output files from several steps

git-svn-id: https://svn.dealii.org/trunk@27755 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Tue, 4 Dec 2012 13:37:15 +0000 (13:37 +0000)]

Give SLEPc the MPI_InitFinalize interface like what PETSc has.

git-svn-id: https://svn.dealii.org/trunk@27753 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 4 Dec 2012 06:09:36 +0000 (06:09 +0000)]

Fix double-free caused by wrong copy constructor of FESystem.

git-svn-id: https://svn.dealii.org/trunk@27749 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 4 Dec 2012 05:54:31 +0000 (05:54 +0000)]

merge to add test to mainline

git-svn-id: https://svn.dealii.org/trunk@27748 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 3 Dec 2012 22:58:22 +0000 (22:58 +0000)]

Deuglify

Also, try to find a fixpoint (*) for initializer lists under astyle

(*) as usual, with the help of a fixpoint iteration...

git-svn-id: https://svn.dealii.org/trunk@27742 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 3 Dec 2012 19:44:54 +0000 (19:44 +0000)]

make indent

git-svn-id: https://svn.dealii.org/trunk@27737 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Mon, 3 Dec 2012 14:21:08 +0000 (14:21 +0000)]

reformat documentation and add memory consumption

git-svn-id: https://svn.dealii.org/trunk@27728 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 3 Dec 2012 08:16:25 +0000 (08:16 +0000)]

Avoid a couple of (stupid) warnings.

git-svn-id: https://svn.dealii.org/trunk@27727 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 3 Dec 2012 07:18:50 +0000 (07:18 +0000)]

Reformat one statement.

git-svn-id: https://svn.dealii.org/trunk@27726 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 1 Dec 2012 21:25:44 +0000 (21:25 +0000)]

Reintroduce the old make_periodicity_constraints interface as well (because this one is _very_ convenient)

git-svn-id: https://svn.dealii.org/trunk@27722 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 1 Dec 2012 21:25:14 +0000 (21:25 +0000)]

Add some Assertions, reindent

git-svn-id: https://svn.dealii.org/trunk@27721 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 1 Dec 2012 17:18:05 +0000 (17:18 +0000)]

update changes.h

git-svn-id: https://svn.dealii.org/trunk@27719 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 1 Dec 2012 17:17:49 +0000 (17:17 +0000)]

A new test for make_periodicity_constraints

git-svn-id: https://svn.dealii.org/trunk@27718 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 1 Dec 2012 17:17:25 +0000 (17:17 +0000)]

Bugfix: Make DoFTools::make_periodicity_constraints orientation aware

With this it is now possible to prescribe an orientation for the low level
interface, the high level interface will detect the necessary orientation
automatically, *yay*.

git-svn-id: https://svn.dealii.org/trunk@27717 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 1 Dec 2012 17:17:02 +0000 (17:17 +0000)]

A new test for GridTools::collect_periodic_face_pairs

git-svn-id: https://svn.dealii.org/trunk@27716 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 1 Dec 2012 17:16:43 +0000 (17:16 +0000)]

Bugfixes:

- Refactor GridTools::collect_periodic_cell_pairs to GridTools::collect_periodic_face_pairs

- Make GridTools::collect_periodix_face_pairs orientation (orientation, flip, rotation) aware

git-svn-id: https://svn.dealii.org/trunk@27715 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 1 Dec 2012 17:16:18 +0000 (17:16 +0000)]

Bugfix: Fix GeometryInfo<2>::child_cell_on_face to respect face_flip

This change does not trigger any regression in the test suite

git-svn-id: https://svn.dealii.org/trunk@27714 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 1 Dec 2012 12:37:39 +0000 (12:37 +0000)]

Comment out unused function arguments.

git-svn-id: https://svn.dealii.org/trunk@27713 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Nov 2012 23:42:30 +0000 (23:42 +0000)]

Remove now outdated files.

git-svn-id: https://svn.dealii.org/trunk@27709 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Nov 2012 16:18:56 +0000 (16:18 +0000)]

Update results for PETSc 3.3.

git-svn-id: https://svn.dealii.org/trunk@27705 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Nov 2012 16:16:47 +0000 (16:16 +0000)]

Remove a test that checks PETSc's Richardson solver but that has never worked and that with PETSc 3.3 now actually aborts.

git-svn-id: https://svn.dealii.org/trunk@27704 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Thu, 29 Nov 2012 16:05:54 +0000 (16:05 +0000)]

Allow ConstraintMatrix::distribute_local_to_global with ChunkSparseMatrix.

git-svn-id: https://svn.dealii.org/trunk@27703 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Nov 2012 15:07:56 +0000 (15:07 +0000)]

Reindent a couple comments. Primarily do so to trigger an automated run of the
testsuite to see if the new setup works.

git-svn-id: https://svn.dealii.org/trunk@27702 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 29 Nov 2012 14:15:46 +0000 (14:15 +0000)]

Minor indentation changes.

git-svn-id: https://svn.dealii.org/trunk@27701 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 27 Nov 2012 14:10:29 +0000 (14:10 +0000)]

Minor markup fixes.

git-svn-id: https://svn.dealii.org/trunk@27696 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 27 Nov 2012 14:09:14 +0000 (14:09 +0000)]

Markup fix.

git-svn-id: https://svn.dealii.org/trunk@27695 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 27 Nov 2012 03:54:03 +0000 (03:54 +0000)]

Fix grammar.

git-svn-id: https://svn.dealii.org/trunk@27694 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Nov 2012 20:02:27 +0000 (20:02 +0000)]

Update an output file that produces different (now correct) results after r27655.

git-svn-id: https://svn.dealii.org/trunk@27691 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 26 Nov 2012 16:39:45 +0000 (16:39 +0000)]

fix comment

git-svn-id: https://svn.dealii.org/trunk@27690 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 26 Nov 2012 14:48:34 +0000 (14:48 +0000)]

Reindent the comments in fe_update_flags.h

git-svn-id: https://svn.dealii.org/trunk@27688 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 26 Nov 2012 14:37:31 +0000 (14:37 +0000)]

Adjust problem size to what is shown in results.

git-svn-id: https://svn.dealii.org/trunk@27687 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 26 Nov 2012 13:08:18 +0000 (13:08 +0000)]

FE_FaceQ should have unit face support points just like FE_DGQ has unit cell support points.

git-svn-id: https://svn.dealii.org/trunk@27684 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Nov 2012 04:57:29 +0000 (04:57 +0000)]

Add a version of DoFTools::make_zero_boundary_constraints that works on only part of the boundary.

git-svn-id: https://svn.dealii.org/trunk@27683 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 26 Nov 2012 04:04:13 +0000 (04:04 +0000)]

Introduce numbers::invalid_boundary_id. Fix up documentation in a couple of other places.

git-svn-id: https://svn.dealii.org/trunk@27682 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sat, 24 Nov 2012 14:58:27 +0000 (14:58 +0000)]

Simplify fixed_power.

git-svn-id: https://svn.dealii.org/trunk@27678 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 23 Nov 2012 15:41:25 +0000 (15:41 +0000)]

Prettify comments and indent in exceptions.h

git-svn-id: https://svn.dealii.org/trunk@27675 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 23 Nov 2012 10:11:05 +0000 (10:11 +0000)]

Fix error message when deal.II uses static libraries and Trilinos shared ones.

git-svn-id: https://svn.dealii.org/trunk@27673 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 23 Nov 2012 10:04:01 +0000 (10:04 +0000)]

VectorTools::interpolate should not call compress on parallel::distributed::Vector as this zeros out those entries that are not locally active but included via constraints. Test step-48 and step-37.

git-svn-id: https://svn.dealii.org/trunk@27672 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Thu, 22 Nov 2012 13:32:48 +0000 (13:32 +0000)]

Avoid segmentation fault when calling DoFHandler::distribute_dofs on empty triangulation.

git-svn-id: https://svn.dealii.org/trunk@27671 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 23:50:16 +0000 (23:50 +0000)]

Avoid debug output to the console.

git-svn-id: https://svn.dealii.org/trunk@27668 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 23:49:38 +0000 (23:49 +0000)]

Introduce a version of step-40 that uses a direct solver.

git-svn-id: https://svn.dealii.org/trunk@27667 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 22:05:49 +0000 (22:05 +0000)]

Fix typo.

git-svn-id: https://svn.dealii.org/trunk@27666 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 21:59:45 +0000 (21:59 +0000)]

Remove a TODO that no longer applies. Minor indentation changes.

git-svn-id: https://svn.dealii.org/trunk@27665 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 20:04:42 +0000 (20:04 +0000)]

We can't use PETSc with threads, so can't use the Kelly error estimator here. Use globally refined meshes instead.

git-svn-id: https://svn.dealii.org/trunk@27664 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 21 Nov 2012 17:04:17 +0000 (17:04 +0000)]

Removed one obsolete comment.

git-svn-id: https://svn.dealii.org/trunk@27663 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 21 Nov 2012 16:36:27 +0000 (16:36 +0000)]

Update outdated function/class names in comments.

git-svn-id: https://svn.dealii.org/trunk@27662 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 14:38:52 +0000 (14:38 +0000)]

Doxygen markup fixes.

git-svn-id: https://svn.dealii.org/trunk@27661 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 14:35:43 +0000 (14:35 +0000)]

Allow compilation with this file again.

git-svn-id: https://svn.dealii.org/trunk@27660 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 13:23:39 +0000 (13:23 +0000)]

Avoid a multiline comment.

git-svn-id: https://svn.dealii.org/trunk@27659 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 13:22:11 +0000 (13:22 +0000)]

Avoid a multiline comment.

git-svn-id: https://svn.dealii.org/trunk@27658 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 13:19:08 +0000 (13:19 +0000)]

Use ranges for copyright years.

git-svn-id: https://svn.dealii.org/trunk@27657 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 13:12:20 +0000 (13:12 +0000)]

Reformat all tutorial programs using the not-so-far indented comment style.

git-svn-id: https://svn.dealii.org/trunk@27656 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 21 Nov 2012 03:28:44 +0000 (03:28 +0000)]

Fix a bug in DoFTools::make_flux_sparsity_pattern originally reported by Baerbel.

git-svn-id: https://svn.dealii.org/trunk@27655 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 20 Nov 2012 23:57:21 +0000 (23:57 +0000)]

better way to fix indentation problem

git-svn-id: https://svn.dealii.org/trunk@27646 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 20 Nov 2012 23:39:07 +0000 (23:39 +0000)]

fix compiler error created by astyle

git-svn-id: https://svn.dealii.org/trunk@27645 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 20 Nov 2012 23:00:01 +0000 (23:00 +0000)]

Update.

git-svn-id: https://svn.dealii.org/trunk@27629 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 20 Nov 2012 22:49:26 +0000 (22:49 +0000)]

indent the whole source code with astyle

git-svn-id: https://svn.dealii.org/trunk@27628 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 20 Nov 2012 22:27:33 +0000 (22:27 +0000)]

fix comment

git-svn-id: https://svn.dealii.org/trunk@27619 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 20 Nov 2012 22:23:12 +0000 (22:23 +0000)]

update style files again

git-svn-id: https://svn.dealii.org/trunk@27618 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 20 Nov 2012 22:03:55 +0000 (22:03 +0000)]

update astyle file after discussion on mailing list

git-svn-id: https://svn.dealii.org/trunk@27617 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Tue, 20 Nov 2012 20:13:28 +0000 (20:13 +0000)]

reinsert reference

git-svn-id: https://svn.dealii.org/trunk@27614 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Tue, 20 Nov 2012 19:08:39 +0000 (19:08 +0000)]

I guess endings are rather .cc and .h, not just cc and h

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kanschat [Tue, 20 Nov 2012 19:07:32 +0000 (19:07 +0000)]

Change alignment of pointers and remove offending option

git-svn-id: https://svn.dealii.org/trunk@27612 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 20 Nov 2012 17:57:53 +0000 (17:57 +0000)]

Remove accidentally added directory.

git-svn-id: https://svn.dealii.org/trunk@27609 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 20 Nov 2012 17:55:04 +0000 (17:55 +0000)]

New test. It turns out that there was no test previously that actually ran a solver. This is one.

git-svn-id: https://svn.dealii.org/trunk@27608 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 20 Nov 2012 17:48:16 +0000 (17:48 +0000)]

Fix a wrongly named function in a comment.

git-svn-id: https://svn.dealii.org/trunk@27607 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 20 Nov 2012 17:16:56 +0000 (17:16 +0000)]

update astyle file

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kronbichler [Tue, 20 Nov 2012 16:37:36 +0000 (16:37 +0000)]

Prettify indentation.

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kronbichler [Tue, 20 Nov 2012 15:53:53 +0000 (15:53 +0000)]

Fix some more comment.

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kronbichler [Tue, 20 Nov 2012 15:47:05 +0000 (15:47 +0000)]

Fix typos in comments.

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kronbichler [Tue, 20 Nov 2012 15:39:35 +0000 (15:39 +0000)]

Eliminate three more warnings.

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bangerth [Tue, 20 Nov 2012 15:31:31 +0000 (15:31 +0000)]

Test the PETScWrappers::SparseDirectMumps interface.

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kronbichler [Tue, 20 Nov 2012 15:03:39 +0000 (15:03 +0000)]

Fix warning with clang.

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bangerth [Tue, 20 Nov 2012 04:33:40 +0000 (04:33 +0000)]

One more test.

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bangerth [Tue, 20 Nov 2012 04:18:55 +0000 (04:18 +0000)]

Ignore unused parameter.

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bangerth [Tue, 20 Nov 2012 04:18:36 +0000 (04:18 +0000)]

Ignore unused parameter.

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bangerth [Tue, 20 Nov 2012 03:03:55 +0000 (03:03 +0000)]

More tests.

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bangerth [Tue, 20 Nov 2012 02:47:04 +0000 (02:47 +0000)]

Add another test.

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frohne [Mon, 19 Nov 2012 12:15:16 +0000 (12:15 +0000)]

More comments

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frohne [Mon, 19 Nov 2012 11:59:43 +0000 (11:59 +0000)]

clean up and comment the solve-function

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frohne [Mon, 19 Nov 2012 09:43:45 +0000 (09:43 +0000)]

Keeping the contact constraints, set_zero for system_rhs_newton in hanging nodes

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