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dealii.git
4 years agoMerge pull request #9916 from drwells/improve-step-8
Daniel Arndt [Fri, 17 Apr 2020 23:12:18 +0000 (19:12 -0400)]
Merge pull request #9916 from drwells/improve-step-8

4 years agoMerge pull request #9917 from nfehn/step-35
Wolfgang Bangerth [Fri, 17 Apr 2020 16:38:01 +0000 (18:38 +0200)]
Merge pull request #9917 from nfehn/step-35

improve documentation of step-35

4 years agoimprove documentation of step-35 9917/head
Niklas Fehn [Fri, 17 Apr 2020 16:12:52 +0000 (18:12 +0200)]
improve documentation of step-35

4 years agostep-8: make text agree with code. 9916/head
David Wells [Fri, 17 Apr 2020 15:33:46 +0000 (11:33 -0400)]
step-8: make text agree with code.

4 years agoMerge pull request #9906 from masterleinad/remove_deprecated_vector_print
Wolfgang Bangerth [Fri, 17 Apr 2020 15:31:08 +0000 (17:31 +0200)]
Merge pull request #9906 from masterleinad/remove_deprecated_vector_print

Remove deprecated Vector::print overloads

4 years agostep-8: make setup more like step-6.
David Wells [Fri, 17 Apr 2020 15:07:01 +0000 (11:07 -0400)]
step-8: make setup more like step-6.

4 years agostep-8: improve header whitespace.
David Wells [Thu, 16 Apr 2020 20:51:48 +0000 (16:51 -0400)]
step-8: improve header whitespace.

4 years agostep-8: remove destructor.
David Wells [Thu, 16 Apr 2020 20:43:11 +0000 (16:43 -0400)]
step-8: remove destructor.

step-6 no longer has a destructor anyway (see aae3ab83d2).

4 years agostep-8: Improve doxygen links.
David Wells [Thu, 16 Apr 2020 20:51:10 +0000 (16:51 -0400)]
step-8: Improve doxygen links.

We do not need to surround these class names with <code></code>.

4 years agostep-8: use {} instead of very long type.
David Wells [Wed, 15 Apr 2020 19:13:29 +0000 (15:13 -0400)]
step-8: use {} instead of very long type.

4 years agoMerge pull request #9911 from masterleinad/use_checkout_v2_for_windows
Timo Heister [Fri, 17 Apr 2020 14:12:37 +0000 (10:12 -0400)]
Merge pull request #9911 from masterleinad/use_checkout_v2_for_windows

Also use checkout@v2 for Windows CI

4 years agoFix tests 9906/head
Daniel Arndt [Fri, 17 Apr 2020 01:30:59 +0000 (21:30 -0400)]
Fix tests

4 years agostep-8: Use AffineConstraints::distribute_local_to_global().
David Wells [Wed, 15 Apr 2020 19:13:02 +0000 (15:13 -0400)]
step-8: Use AffineConstraints::distribute_local_to_global().

4 years agostep-8: use MathJax in some formulas.
David Wells [Wed, 15 Apr 2020 18:52:27 +0000 (14:52 -0400)]
step-8: use MathJax in some formulas.

Also use <tt></tt> where appropriate for typesetting variables.

4 years agoMerge pull request #9910 from masterleinad/fix_petsc_copy_to_dealvec_block
Daniel Arndt [Thu, 16 Apr 2020 22:30:52 +0000 (18:30 -0400)]
Merge pull request #9910 from masterleinad/fix_petsc_copy_to_dealvec_block

4 years agoAlso use chevkout@v2 for Windows CI 9911/head
Daniel Arndt [Thu, 16 Apr 2020 20:56:34 +0000 (16:56 -0400)]
Also use chevkout@v2 for Windows CI

4 years agoMerge pull request #9907 from kronbichler/do_not_include_fe_q_h
Martin Kronbichler [Thu, 16 Apr 2020 19:52:29 +0000 (21:52 +0200)]
Merge pull request #9907 from kronbichler/do_not_include_fe_q_h

Do not include fe_q.h in mapping_q_generic.h

4 years agoMerge pull request #9905 from drwells/remove-static-casts
Martin Kronbichler [Thu, 16 Apr 2020 18:40:34 +0000 (20:40 +0200)]
Merge pull request #9905 from drwells/remove-static-casts

Remove some unneeded static casts.

4 years agoFix petsc/copy_to_dealvec_block 9910/head
Daniel Arndt [Thu, 16 Apr 2020 18:20:26 +0000 (14:20 -0400)]
Fix petsc/copy_to_dealvec_block

4 years agoMerge pull request #9909 from peterrum/grid_tools_exchange_cell_data_to_ghosts_cast
Martin Kronbichler [Thu, 16 Apr 2020 18:10:20 +0000 (20:10 +0200)]
Merge pull request #9909 from peterrum/grid_tools_exchange_cell_data_to_ghosts_cast

GridTools::exchange_cell_data_to_ghosts replace cast

4 years agoChangelog 9907/head
Martin Kronbichler [Thu, 16 Apr 2020 18:09:31 +0000 (20:09 +0200)]
Changelog

4 years agoMerge pull request #9908 from peterrum/write_vkt_fix_type
Wolfgang Bangerth [Thu, 16 Apr 2020 15:15:25 +0000 (17:15 +0200)]
Merge pull request #9908 from peterrum/write_vkt_fix_type

Fix type in GridOut::write_vtk

4 years agoGridTools::exchange_cell_data_to_ghosts replace static_cast by dynamic_cast 9909/head
Peter Munch [Thu, 16 Apr 2020 15:08:12 +0000 (17:08 +0200)]
GridTools::exchange_cell_data_to_ghosts replace static_cast by dynamic_cast

4 years agoRemove some unneeded static casts. 9905/head
David Wells [Thu, 16 Apr 2020 02:08:59 +0000 (22:08 -0400)]
Remove some unneeded static casts.

These types are all printable now (see 7a3b4065d4d) so we don't need these
static casts.

4 years agoFix type in GridOut::write_vtk 9908/head
Peter Munch [Thu, 16 Apr 2020 13:08:16 +0000 (15:08 +0200)]
Fix type in GridOut::write_vtk

4 years agoDo not include fe_q.h in mapping_q_generic.h
Martin Kronbichler [Thu, 16 Apr 2020 06:32:20 +0000 (08:32 +0200)]
Do not include fe_q.h in mapping_q_generic.h

4 years agoMerge pull request #9873 from jppelteret/doc_timestepping_schemes_01
Martin Kronbichler [Thu, 16 Apr 2020 06:11:53 +0000 (08:11 +0200)]
Merge pull request #9873 from jppelteret/doc_timestepping_schemes_01

Document time stepping methods to tutorial summary.

4 years agoMerge pull request #9902 from peterrum/latex_fixes
Martin Kronbichler [Thu, 16 Apr 2020 05:59:09 +0000 (07:59 +0200)]
Merge pull request #9902 from peterrum/latex_fixes

Minor latex fixes in step-67 and step-69

4 years agoMerge pull request #9904 from drwells/gnuplot-cleanup-1
Martin Kronbichler [Thu, 16 Apr 2020 05:57:45 +0000 (07:57 +0200)]
Merge pull request #9904 from drwells/gnuplot-cleanup-1

Move an object to the stack.

4 years agoRemove deprecated Vector::print overloads
Daniel Arndt [Thu, 16 Apr 2020 02:48:45 +0000 (22:48 -0400)]
Remove deprecated Vector::print overloads

4 years agoMerge pull request #9897 from bangerth/52
David Wells [Thu, 16 Apr 2020 02:23:01 +0000 (22:23 -0400)]
Merge pull request #9897 from bangerth/52

Use the same variable name in all output files in step-52.

4 years agoMerge pull request #9896 from tcclevenger/constant_modes_fix
David Wells [Thu, 16 Apr 2020 02:21:36 +0000 (22:21 -0400)]
Merge pull request #9896 from tcclevenger/constant_modes_fix

TrilinosML constant modes bug fix

4 years agoMerge pull request #9899 from bangerth/52-2
David Wells [Thu, 16 Apr 2020 02:18:39 +0000 (22:18 -0400)]
Merge pull request #9899 from bangerth/52-2

Make the output of step-52 a bit easier to read.

4 years agoMove an object to the stack. 9904/head
David Wells [Thu, 16 Apr 2020 01:38:40 +0000 (21:38 -0400)]
Move an object to the stack.

4 years agoMerge pull request #9885 from peterrum/prm_warning
Wolfgang Bangerth [Thu, 16 Apr 2020 01:02:48 +0000 (03:02 +0200)]
Merge pull request #9885 from peterrum/prm_warning

Add incompatibility entry regrading ParameterHandler::parse_input()

4 years agoMerge pull request #9895 from bangerth/enable_if
David Wells [Wed, 15 Apr 2020 22:21:45 +0000 (18:21 -0400)]
Merge pull request #9895 from bangerth/enable_if

Use std::enable_if instead of boost::disable_if.

4 years agoAdd warning to parse_input 9885/head
Peter Munch [Tue, 14 Apr 2020 10:58:53 +0000 (12:58 +0200)]
Add warning to parse_input

4 years agoMinor latex fixes in step-67 and step-69 9902/head
Peter Munch [Wed, 15 Apr 2020 20:49:24 +0000 (22:49 +0200)]
Minor latex fixes in step-67 and step-69

4 years agoMerge pull request #9894 from bangerth/prm
Daniel Arndt [Wed, 15 Apr 2020 20:13:00 +0000 (16:13 -0400)]
Merge pull request #9894 from bangerth/prm

4 years agoMerge pull request #9900 from bangerth/visit
Daniel Arndt [Wed, 15 Apr 2020 20:00:06 +0000 (16:00 -0400)]
Merge pull request #9900 from bangerth/visit

4 years agoCorrect the spelling of the VisIt program. 9900/head
Wolfgang Bangerth [Wed, 15 Apr 2020 19:54:12 +0000 (13:54 -0600)]
Correct the spelling of the VisIt program.

4 years agoMake the output of step-52 a bit easier to read. 9899/head
Wolfgang Bangerth [Wed, 15 Apr 2020 19:49:38 +0000 (13:49 -0600)]
Make the output of step-52 a bit easier to read.

4 years agoUse the same variable name in all output files. 9897/head
Wolfgang Bangerth [Wed, 15 Apr 2020 19:38:49 +0000 (13:38 -0600)]
Use the same variable name in all output files.

4 years agoextract_constant_modes fix 9896/head
tcclevenger [Wed, 15 Apr 2020 18:04:18 +0000 (14:04 -0400)]
extract_constant_modes fix

4 years agoMerge pull request #9893 from bangerth/cleanups
Bruno Turcksin [Wed, 15 Apr 2020 16:59:39 +0000 (12:59 -0400)]
Merge pull request #9893 from bangerth/cleanups

4 years agoUse std::enable_if instead of boost::disable_if. 9895/head
Wolfgang Bangerth [Wed, 15 Apr 2020 16:43:46 +0000 (10:43 -0600)]
Use std::enable_if instead of boost::disable_if.

4 years agoUse std::ifstream instead of the detour via std::filebuf. 9894/head
Wolfgang Bangerth [Wed, 15 Apr 2020 14:50:12 +0000 (08:50 -0600)]
Use std::ifstream instead of the detour via std::filebuf.

While there also move an assertion.

4 years agoFix a couple of things in step-52. 9893/head
Wolfgang Bangerth [Wed, 15 Apr 2020 14:18:23 +0000 (08:18 -0600)]
Fix a couple of things in step-52.

4 years agoMerge pull request #9890 from luca-heltai/set-particle-positions-fix
Wolfgang Bangerth [Wed, 15 Apr 2020 14:18:01 +0000 (16:18 +0200)]
Merge pull request #9890 from luca-heltai/set-particle-positions-fix

Fix set particle positions from Function<spacedim>

4 years agoMerge pull request #9826 from kronbichler/remove_fe_q_from_mapping_q
David Wells [Wed, 15 Apr 2020 13:18:22 +0000 (09:18 -0400)]
Merge pull request #9826 from kronbichler/remove_fe_q_from_mapping_q

Do not use FE_Q in MappingQGeneric

4 years agoMerge pull request #9882 from masterleinad/remove_generalized_face_support
David Wells [Wed, 15 Apr 2020 13:17:20 +0000 (09:17 -0400)]
Merge pull request #9882 from masterleinad/remove_generalized_face_support

Remove FiniteElement::[has|get]_generalized_face_support_points

4 years agoFix set particle positions. 9890/head
Luca Heltai [Tue, 14 Apr 2020 22:53:53 +0000 (00:53 +0200)]
Fix set particle positions.

4 years agoMerge pull request #9887 from dangars/petsc_jacobi_tvmult
Martin Kronbichler [Wed, 15 Apr 2020 04:54:32 +0000 (06:54 +0200)]
Merge pull request #9887 from dangars/petsc_jacobi_tvmult

Add Tvmult to Petsc PreconditionJacobi

4 years agoReduce possibility for roundoff in DataOut VTU test 9826/head
Martin Kronbichler [Tue, 14 Apr 2020 20:49:02 +0000 (22:49 +0200)]
Reduce possibility for roundoff in DataOut VTU test

4 years agoMerge pull request #9833 from krishnakumarg1984/fix_step52
Wolfgang Bangerth [Tue, 14 Apr 2020 18:07:45 +0000 (20:07 +0200)]
Merge pull request #9833 from krishnakumarg1984/fix_step52

fixes issue 9722 by correctly writing time data into a aggregate pvd …

4 years agoWrite test for Tvmult of PETSc PreconditionJacobi 9887/head
Daniel Garcia-Sanchez [Tue, 14 Apr 2020 17:45:39 +0000 (19:45 +0200)]
Write test for Tvmult of PETSc PreconditionJacobi

4 years agoMerge pull request #9886 from masterleinad/remove_deprecated_linear_algebra_distribut...
Daniel Arndt [Tue, 14 Apr 2020 17:40:23 +0000 (13:40 -0400)]
Merge pull request #9886 from masterleinad/remove_deprecated_linear_algebra_distributed_vector

Remove deprecated LinearAlgebra::distributed::Vector member functions

4 years agoAdd Tvmult to PETSc PreconditionerBase
Daniel Garcia-Sanchez [Tue, 14 Apr 2020 17:13:51 +0000 (19:13 +0200)]
Add Tvmult to PETSc PreconditionerBase

4 years agoFix typo in doc entry 9882/head
Daniel Arndt [Tue, 14 Apr 2020 17:01:26 +0000 (13:01 -0400)]
Fix typo in doc entry

Co-Authored-By: David Wells <drwells@email.unc.edu>
4 years agoDo not use FE_Q in MappingQGeneric
Martin Kronbichler [Sun, 5 Apr 2020 10:13:14 +0000 (12:13 +0200)]
Do not use FE_Q in MappingQGeneric

4 years agoRemove deprecated LinearAlgebra::distributed::Vector member functions 9886/head
Daniel Arndt [Tue, 14 Apr 2020 14:13:30 +0000 (10:13 -0400)]
Remove deprecated LinearAlgebra::distributed::Vector member functions

4 years agoMerge pull request #9884 from bangerth/dataout
Martin Kronbichler [Tue, 14 Apr 2020 12:10:22 +0000 (14:10 +0200)]
Merge pull request #9884 from bangerth/dataout

Fix an indexing bug with multiple postprocessors

4 years agoAdd a test case. 9884/head
Wolfgang Bangerth [Tue, 14 Apr 2020 03:27:38 +0000 (21:27 -0600)]
Add a test case.

4 years agoFix an indexing bug with complex output and postprocessors.
Wolfgang Bangerth [Tue, 14 Apr 2020 03:27:01 +0000 (21:27 -0600)]
Fix an indexing bug with complex output and postprocessors.

4 years agofixes issue 9722 by correctly writing time data into a aggregate pvd file (one per... 9833/head
Krishnakumar Gopalakrishnan [Sun, 5 Apr 2020 21:33:50 +0000 (22:33 +0100)]
fixes issue 9722 by correctly writing time data into a aggregate pvd file (one per each time-stepping scheme

fixes indendation issues. addresses code-review comments by Daniel Arndt

4 years agoMerge pull request #9829 from kronbichler/extend_fe_tools
David Wells [Mon, 13 Apr 2020 21:13:04 +0000 (17:13 -0400)]
Merge pull request #9829 from kronbichler/extend_fe_tools

FETools: Add additional lexicographic_to_hierarchic_numbering functions

4 years agoMerge pull request #9710 from kronbichler/improve_distribute_sparsity_pattern
David Wells [Mon, 13 Apr 2020 20:39:04 +0000 (16:39 -0400)]
Merge pull request #9710 from kronbichler/improve_distribute_sparsity_pattern

SparsityTools::distribute_sparsity_pattern with compute_index_owner

4 years agoRemove FiniteElement::[has|get]_generalized_face_support_points
Daniel Arndt [Mon, 13 Apr 2020 16:41:56 +0000 (12:41 -0400)]
Remove FiniteElement::[has|get]_generalized_face_support_points

4 years agoMerge pull request #9881 from rezarastak/patch-1
Timo Heister [Mon, 13 Apr 2020 12:34:39 +0000 (08:34 -0400)]
Merge pull request #9881 from rezarastak/patch-1

Tiny Cmake documentation fix

4 years agoMerge pull request #9741 from nfehn/parse_input
Luca Heltai [Mon, 13 Apr 2020 09:48:11 +0000 (11:48 +0200)]
Merge pull request #9741 from nfehn/parse_input

Extend ParameterHandler::parse_input() for file-type-independent parsing with inbuilt correctness check

4 years agoextend function parse_input() for file-type-independent parsing 9741/head
Niklas Fehn [Thu, 26 Mar 2020 15:44:24 +0000 (16:44 +0100)]
extend function parse_input() for file-type-independent parsing

4 years agoTiny Cmake documentation fix 9881/head
Reza Rastak [Mon, 13 Apr 2020 06:47:12 +0000 (23:47 -0700)]
Tiny Cmake documentation fix

4 years agoMerge pull request #9877 from rezarastak/numbers_types_includes
Daniel Arndt [Mon, 13 Apr 2020 02:48:09 +0000 (22:48 -0400)]
Merge pull request #9877 from rezarastak/numbers_types_includes

update included std headers in number.h and types.h

4 years agoMerge pull request #9879 from dangars/cmake_documentation_center
Matthias Maier [Sun, 12 Apr 2020 17:42:46 +0000 (12:42 -0500)]
Merge pull request #9879 from dangars/cmake_documentation_center

Center comment

4 years agoCenter comment 9879/head
Daniel Garcia-Sanchez [Sun, 12 Apr 2020 14:16:12 +0000 (16:16 +0200)]
Center comment

4 years agoMerge pull request #9874 from peterrum/dofhandler_mf
Martin Kronbichler [Sun, 12 Apr 2020 05:48:40 +0000 (07:48 +0200)]
Merge pull request #9874 from peterrum/dofhandler_mf

Merge MatrixFree::internal_reinit for DoFHandler and hp::DoFHandler

4 years agoMerge pull request #9875 from peterrum/mf_level
Daniel Arndt [Sun, 12 Apr 2020 02:10:04 +0000 (22:10 -0400)]
Merge pull request #9875 from peterrum/mf_level

Remove MatrixFree::DoFHandlers::level

4 years agoDocument time stepping methods in tutorial summary. 9873/head
Jean-Paul Pelteret [Sat, 11 Apr 2020 23:04:26 +0000 (01:04 +0200)]
Document time stepping methods in tutorial summary.

4 years agoRemove MatrixFree::DoFHandlers::level 9875/head
Peter Munch [Sat, 11 Apr 2020 13:45:49 +0000 (15:45 +0200)]
Remove MatrixFree::DoFHandlers::level

4 years agoMerge MatrixFree::internal_reinit for DoFHandler and hp::DoFHandler 9874/head
Peter Munch [Sat, 11 Apr 2020 11:18:56 +0000 (13:18 +0200)]
Merge MatrixFree::internal_reinit for DoFHandler and hp::DoFHandler

4 years agoinclude statements for standard headers improved 9877/head
Reza Rastak [Sat, 11 Apr 2020 07:26:46 +0000 (00:26 -0700)]
include statements for standard headers improved

4 years agoMerge pull request #9870 from kronbichler/fix_tests
Matthias Maier [Sat, 11 Apr 2020 00:04:18 +0000 (19:04 -0500)]
Merge pull request #9870 from kronbichler/fix_tests

Fix three tests

4 years agoMerge pull request #9865 from dangars/cmake_documentation
Matthias Maier [Fri, 10 Apr 2020 23:50:24 +0000 (18:50 -0500)]
Merge pull request #9865 from dangars/cmake_documentation

Improve CMake documentation for google search

4 years agoMerge pull request #9863 from dangars/step_69_cmake_threads
Matthias Maier [Fri, 10 Apr 2020 23:47:08 +0000 (18:47 -0500)]
Merge pull request #9863 from dangars/step_69_cmake_threads

Use #ifdef to guard std::async in step-69

4 years agoMerge pull request #9872 from tjhei/doxygen_extract_private
Daniel Arndt [Fri, 10 Apr 2020 22:23:38 +0000 (18:23 -0400)]
Merge pull request #9872 from tjhei/doxygen_extract_private

doxygen: enable private again

4 years agoUpdate html links 9865/head
Daniel Garcia-Sanchez [Fri, 10 Apr 2020 20:58:30 +0000 (22:58 +0200)]
Update html links

4 years agodoxygen: enable private again 9872/head
Timo Heister [Fri, 10 Apr 2020 20:47:20 +0000 (16:47 -0400)]
doxygen: enable private again

fixes #9855

4 years agoMerge pull request #9830 from rezarastak/tensor_doc
Martin Kronbichler [Fri, 10 Apr 2020 19:01:50 +0000 (21:01 +0200)]
Merge pull request #9830 from rezarastak/tensor_doc

Doc of Tensor and SymmetricTensor improved.

4 years agoMerge pull request #9866 from masterleinad/fix_gcc_tbb_warning
Martin Kronbichler [Fri, 10 Apr 2020 18:57:54 +0000 (20:57 +0200)]
Merge pull request #9866 from masterleinad/fix_gcc_tbb_warning

Fix gcc warning in TBB

4 years agoMerge pull request #9871 from masterleinad/fix_get_boundary_ids_test
Wolfgang Bangerth [Fri, 10 Apr 2020 15:43:26 +0000 (17:43 +0200)]
Merge pull request #9871 from masterleinad/fix_get_boundary_ids_test

Minor fixes to get_boundary_ids_01

4 years agoMinor fixes to get_boundary_ids_01 9871/head
Daniel Arndt [Fri, 10 Apr 2020 15:25:52 +0000 (11:25 -0400)]
Minor fixes to get_boundary_ids_01

4 years agoMerge pull request #9812 from peterrum/get_boundary_ids_parallel
Daniel Arndt [Fri, 10 Apr 2020 15:26:41 +0000 (11:26 -0400)]
Merge pull request #9812 from peterrum/get_boundary_ids_parallel

Fix get_boundary_ids() and get_manifold_ids() for parallel triangulations

4 years agoFix gcc warning in TBB 9866/head
Daniel Arndt [Fri, 10 Apr 2020 03:14:38 +0000 (23:14 -0400)]
Fix gcc warning in TBB

4 years agoAdd output variant for another test (change due to FMA) 9870/head
Martin Kronbichler [Fri, 10 Apr 2020 15:08:14 +0000 (17:08 +0200)]
Add output variant for another test (change due to FMA)

4 years agoAdd output variant for a test (change due to FMA)
Martin Kronbichler [Fri, 10 Apr 2020 15:08:03 +0000 (17:08 +0200)]
Add output variant for a test (change due to FMA)

4 years agoUpdate output file without vectorization
Martin Kronbichler [Fri, 10 Apr 2020 14:52:54 +0000 (16:52 +0200)]
Update output file without vectorization

4 years agoChangelog 9710/head
Martin Kronbichler [Sun, 22 Mar 2020 11:45:21 +0000 (12:45 +0100)]
Changelog

4 years agoUpdate tests to new distribute_sparsity_pattern
Martin Kronbichler [Sun, 22 Mar 2020 11:45:10 +0000 (12:45 +0100)]
Update tests to new distribute_sparsity_pattern

4 years agoSimplify distribute_sparsity_pattern in examples
Martin Kronbichler [Sun, 22 Mar 2020 06:48:17 +0000 (07:48 +0100)]
Simplify distribute_sparsity_pattern in examples

4 years agoUse faster distribute_sparsity_pattern within library
Martin Kronbichler [Sun, 22 Mar 2020 06:28:29 +0000 (07:28 +0100)]
Use faster distribute_sparsity_pattern within library


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