https://gitweb.dealii.org/

Timo Heister [Mon, 11 Nov 2013 18:27:45 +0000 (18:27 +0000)]

tests: use deal.II constant for PI, might fix tests on cygwin

git-svn-id: https://svn.dealii.org/trunk@31629 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Mon, 11 Nov 2013 16:17:31 +0000 (16:17 +0000)]

Reorganize the licensing stuff a bit. Add some last license headers and pointers

git-svn-id: https://svn.dealii.org/trunk@31628 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Mon, 11 Nov 2013 15:57:46 +0000 (15:57 +0000)]

Remove file doxygen.sty from the doc directory - it is ancient can be generated on the fly by modern doxygen

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Matthias Maier [Mon, 11 Nov 2013 15:51:49 +0000 (15:51 +0000)]

Move reports over to the homepage

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Guido Kanschat [Mon, 11 Nov 2013 12:06:35 +0000 (12:06 +0000)]

revert UML

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Toby D. Young [Mon, 11 Nov 2013 10:21:02 +0000 (10:21 +0000)]

Use deal.II style on previous patch.

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Toby D. Young [Mon, 11 Nov 2013 10:19:52 +0000 (10:19 +0000)]

Link to header stdlib.h on FreeBSD.

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Matthias Maier [Mon, 11 Nov 2013 09:06:30 +0000 (09:06 +0000)]

Revert "Revert 29343 again, for the same reason as before." which itself reverted the revert of [...]

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Wolfgang Bangerth [Mon, 11 Nov 2013 01:03:17 +0000 (01:03 +0000)]

Provide documentation.

git-svn-id: https://svn.dealii.org/trunk@31615 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 11 Nov 2013 00:43:42 +0000 (00:43 +0000)]

Add another test.

git-svn-id: https://svn.dealii.org/trunk@31614 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 10 Nov 2013 23:01:32 +0000 (23:01 +0000)]

Adjust a few miscompilations.

git-svn-id: https://svn.dealii.org/trunk@31613 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 10 Nov 2013 22:55:30 +0000 (22:55 +0000)]

Adjust output file again for testing machine.

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Jean-Paul Pelteret [Sun, 10 Nov 2013 22:17:05 +0000 (22:17 +0000)]

Updated Mesh conversion documentation to reflect licencing of example mesh files

git-svn-id: https://svn.dealii.org/trunk@31611 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 10 Nov 2013 18:26:00 +0000 (18:26 +0000)]

Remove postscript version of reports. This is so 1990s!

git-svn-id: https://svn.dealii.org/trunk@31610 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 10 Nov 2013 18:20:01 +0000 (18:20 +0000)]

Shrink the file by only including options that we really care about and
removing the commentary from the doxygen authors. This should address
copyright concerns for the file.

Removing variables we don't care about also helps make this file more future
proof since we no longer include variables that later versions of doxygen may
deprecate or remove.

git-svn-id: https://svn.dealii.org/trunk@31609 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 10 Nov 2013 17:20:37 +0000 (17:20 +0000)]

Use a different form of instantiation in an attempt to work around something that may be a bug in ICC.

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Wolfgang Bangerth [Sun, 10 Nov 2013 17:11:17 +0000 (17:11 +0000)]

Nothing should be built in this directory any more these days, so remove svn:ignore.

git-svn-id: https://svn.dealii.org/trunk@31607 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 10 Nov 2013 17:06:08 +0000 (17:06 +0000)]

Remove svn:executable from mesh files.

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Wolfgang Bangerth [Sun, 10 Nov 2013 15:28:26 +0000 (15:28 +0000)]

Convert some of the VectorOperation::add into VectorOperation::insert as appropriate.

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Matthias Maier [Sun, 10 Nov 2013 09:26:32 +0000 (09:26 +0000)]

Revert "Also instantiate DataOutStack for 3D"

git-svn-id: https://svn.dealii.org/trunk@31604 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 9 Nov 2013 22:56:29 +0000 (22:56 +0000)]

Also instantiate DataOutStack for 3D

git-svn-id: https://svn.dealii.org/trunk@31603 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Sat, 9 Nov 2013 15:38:36 +0000 (15:38 +0000)]

Explicitly compress petsc objects with a VectorOperation.

git-svn-id: https://svn.dealii.org/trunk@31602 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 9 Nov 2013 14:00:15 +0000 (14:00 +0000)]

Adjust accuracy so that numdiff can do its work.

git-svn-id: https://svn.dealii.org/trunk@31601 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 9 Nov 2013 08:52:48 +0000 (08:52 +0000)]

Bugfix: Let setup_tests and tests depend on a compiled library again...

git-svn-id: https://svn.dealii.org/trunk@31600 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Sat, 9 Nov 2013 02:29:29 +0000 (02:29 +0000)]

fix warning

git-svn-id: https://svn.dealii.org/trunk@31599 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 8 Nov 2013 23:53:04 +0000 (23:53 +0000)]

Try to improve one issue where compilers typically can't quite resolve a function overload.

git-svn-id: https://svn.dealii.org/trunk@31598 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 8 Nov 2013 23:20:11 +0000 (23:20 +0000)]

Reindent the whole file.

git-svn-id: https://svn.dealii.org/trunk@31597 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 8 Nov 2013 23:18:09 +0000 (23:18 +0000)]

Add several more tests.

git-svn-id: https://svn.dealii.org/trunk@31596 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 8 Nov 2013 23:17:44 +0000 (23:17 +0000)]

Reimplement the third option for WorkStream, using the colored graph.

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Timo Heister [Fri, 8 Nov 2013 21:31:09 +0000 (21:31 +0000)]

try to detect hdf5 64bit mode

git-svn-id: https://svn.dealii.org/trunk@31594 0785d39b-7218-0410-832d-ea1e28bc413d

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Joerg Frohne [Fri, 8 Nov 2013 16:47:28 +0000 (16:47 +0000)]

fix bug for damping

git-svn-id: https://svn.dealii.org/trunk@31592 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 8 Nov 2013 15:11:41 +0000 (15:11 +0000)]

get rid of some warnings

git-svn-id: https://svn.dealii.org/trunk@31591 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 8 Nov 2013 14:21:32 +0000 (14:21 +0000)]

fix abandoning threads. Instead of keeping ThreadDescriptor alive using a shared_ptr to self, we just detach() from the c++ thread when destructed.

git-svn-id: https://svn.dealii.org/trunk@31590 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 8 Nov 2013 14:06:30 +0000 (14:06 +0000)]

mark spinlock variables in tests volatile for release mode

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Timo Heister [Fri, 8 Nov 2013 13:25:28 +0000 (13:25 +0000)]

make multigrid test succeed by switching from CG to GMRES. I have no idea if the problem should be SPD and if CG should work, though.

git-svn-id: https://svn.dealii.org/trunk@31588 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 8 Nov 2013 13:09:36 +0000 (13:09 +0000)]

fix data type

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Timo Heister [Fri, 8 Nov 2013 12:56:31 +0000 (12:56 +0000)]

fix dead links, add some references to cmake documentation

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Timo Heister [Fri, 8 Nov 2013 12:50:56 +0000 (12:50 +0000)]

mention 'make test'

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Wolfgang Bangerth [Fri, 8 Nov 2013 05:08:26 +0000 (05:08 +0000)]

Remove a TODO that has been taken care of.

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Wolfgang Bangerth [Fri, 8 Nov 2013 05:06:55 +0000 (05:06 +0000)]

Add a few tests.

git-svn-id: https://svn.dealii.org/trunk@31583 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 8 Nov 2013 04:57:45 +0000 (04:57 +0000)]

Fix typo.

git-svn-id: https://svn.dealii.org/trunk@31582 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 8 Nov 2013 04:55:17 +0000 (04:55 +0000)]

Add another test.

git-svn-id: https://svn.dealii.org/trunk@31581 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 8 Nov 2013 00:53:15 +0000 (00:53 +0000)]

Augment the documentation by one additional point.

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Bruno Turcksin [Thu, 7 Nov 2013 22:42:51 +0000 (22:42 +0000)]

Fix a bug in graph_coloring when there is only one partition.

git-svn-id: https://svn.dealii.org/trunk@31579 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 7 Nov 2013 22:09:44 +0000 (22:09 +0000)]

One last minor change.

git-svn-id: https://svn.dealii.org/trunk@31578 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 7 Nov 2013 21:52:09 +0000 (21:52 +0000)]

Add some more comments.

git-svn-id: https://svn.dealii.org/trunk@31577 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 7 Nov 2013 20:27:45 +0000 (20:27 +0000)]

Rename namespace. Add some more documentation.

git-svn-id: https://svn.dealii.org/trunk@31576 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 7 Nov 2013 20:27:31 +0000 (20:27 +0000)]

Rename namespace. Add some more documentation.

git-svn-id: https://svn.dealii.org/trunk@31575 0785d39b-7218-0410-832d-ea1e28bc413d

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Bruno Turcksin [Thu, 7 Nov 2013 20:16:17 +0000 (20:16 +0000)]

Simplify code in WorkStream when graph coloring is used.

git-svn-id: https://svn.dealii.org/trunk@31574 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 7 Nov 2013 19:41:41 +0000 (19:41 +0000)]

Add another test.

git-svn-id: https://svn.dealii.org/trunk@31573 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 7 Nov 2013 19:41:22 +0000 (19:41 +0000)]

Move a comment to the correct function. Fix an oversight with local namespaces.

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Wolfgang Bangerth [Thu, 7 Nov 2013 01:36:38 +0000 (01:36 +0000)]

Move around a couple of things. Reindent the whole file.

git-svn-id: https://svn.dealii.org/trunk@31571 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Wed, 6 Nov 2013 23:14:49 +0000 (23:14 +0000)]

Promote the warning in macro_pickup_tests.cmake to a fatal error

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Wolfgang Bangerth [Wed, 6 Nov 2013 23:06:21 +0000 (23:06 +0000)]

Announce step-42.

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Bruno Turcksin [Wed, 6 Nov 2013 23:03:56 +0000 (23:03 +0000)]

Add test for graph_coloring.

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Bruno Turcksin [Wed, 6 Nov 2013 18:01:36 +0000 (18:01 +0000)]

mmult and Tmmult cannot be used with Trilinos sparse_matrix and 64bit indices.

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Wolfgang Bangerth [Wed, 6 Nov 2013 17:17:35 +0000 (17:17 +0000)]

Add more information to the graph coloring function.

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Timo Heister [Wed, 6 Nov 2013 15:05:14 +0000 (15:05 +0000)]

fix typos

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Timo Heister [Wed, 6 Nov 2013 15:03:17 +0000 (15:03 +0000)]

rewrap comments

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Timo Heister [Wed, 6 Nov 2013 14:47:38 +0000 (14:47 +0000)]

add slepc quicktest, thanks Toby

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Wolfgang Bangerth [Wed, 6 Nov 2013 12:40:36 +0000 (12:40 +0000)]

Initialize a variable to avoid a warning.

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Guido Kanschat [Wed, 6 Nov 2013 10:25:28 +0000 (10:25 +0000)]

reformat documentation to longer lines

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Matthias Maier [Tue, 5 Nov 2013 23:53:08 +0000 (23:53 +0000)]

Clean up application.qrc

git-svn-id: https://svn.dealii.org/trunk@31558 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Tue, 5 Nov 2013 23:50:14 +0000 (23:50 +0000)]

Remove bundled icons from parameter_gui and use system defaults instead

git-svn-id: https://svn.dealii.org/trunk@31557 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Tue, 5 Nov 2013 22:00:02 +0000 (22:00 +0000)]

Bugfix: Be more specific with the warning introduced by the last commit:
Also print "Test dropped". And, finally, rename broken output files

git-svn-id: https://svn.dealii.org/trunk@31555 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Tue, 5 Nov 2013 21:46:03 +0000 (21:46 +0000)]

Bugfix: Do not silently ignore invalid feature constraints, but drop the test and print a warning

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Matthias Maier [Tue, 5 Nov 2013 17:42:17 +0000 (17:42 +0000)]

Unify output

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Matthias Maier [Tue, 5 Nov 2013 17:20:44 +0000 (17:20 +0000)]

Fix escaping

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Matthias Maier [Tue, 5 Nov 2013 16:46:15 +0000 (16:46 +0000)]

Remove debug output

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Matthias Maier [Tue, 5 Nov 2013 16:42:19 +0000 (16:42 +0000)]

Quickfix: Do not use the "sed" statement in run_testsuite at all on non GNU platforms

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Matthias Maier [Tue, 5 Nov 2013 16:37:13 +0000 (16:37 +0000)]

Revert "Bugfix: Do not try to inject a "\n\t" into xml files"

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Timo Heister [Tue, 5 Nov 2013 16:31:42 +0000 (16:31 +0000)]

quicktest: add debug output

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Timo Heister [Tue, 5 Nov 2013 16:24:21 +0000 (16:24 +0000)]

quicktests: add dependency to target binary, add tbb test

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Bruno Turcksin [Tue, 5 Nov 2013 16:09:05 +0000 (16:09 +0000)]

Fix a bug in WorkStream when the number of cells in a color is small.

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Timo Heister [Tue, 5 Nov 2013 15:47:55 +0000 (15:47 +0000)]

clean up quicktest script

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Wolfgang Bangerth [Mon, 4 Nov 2013 23:39:02 +0000 (23:39 +0000)]

Provide 64-bit output.

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Timo Heister [Mon, 4 Nov 2013 23:03:19 +0000 (23:03 +0000)]

we can not use MUMPS with 64 bits

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Timo Heister [Mon, 4 Nov 2013 23:00:07 +0000 (23:00 +0000)]

compute_block_wise for 64bit: fix one problem and remove ExcNotImplemented. Maybe it works as is.

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Timo Heister [Mon, 4 Nov 2013 22:54:39 +0000 (22:54 +0000)]

fix test with 64bit

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Matthias Maier [Mon, 4 Nov 2013 21:54:58 +0000 (21:54 +0000)]

Bugfix: Do not try to inject a "\n\t" into xml files

git-svn-id: https://svn.dealii.org/trunk@31540 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Mon, 4 Nov 2013 20:18:59 +0000 (20:18 +0000)]

remove 2x compress() in step-42

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Timo Heister [Mon, 4 Nov 2013 00:19:03 +0000 (00:19 +0000)]

ignore affinity quick test on mac

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Timo Heister [Sun, 3 Nov 2013 20:43:28 +0000 (20:43 +0000)]

fix compilation on intel 13.1

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Matthias Maier [Sun, 3 Nov 2013 20:40:46 +0000 (20:40 +0000)]

Disable a workaround for icc-13* and aggressive optimization.

The bug is not reproducable any more.

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Wolfgang Bangerth [Sun, 3 Nov 2013 17:51:39 +0000 (17:51 +0000)]

Catch an exception that apparently happens in 64-bit mode.

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Wolfgang Bangerth [Sun, 3 Nov 2013 17:46:24 +0000 (17:46 +0000)]

Only run Parasails test in 32 bit mode.

git-svn-id: https://svn.dealii.org/trunk@31534 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 3 Nov 2013 17:45:00 +0000 (17:45 +0000)]

Only run MUMPS test in 32 bit mode.

git-svn-id: https://svn.dealii.org/trunk@31533 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 3 Nov 2013 17:42:05 +0000 (17:42 +0000)]

Have both 32 and 64 bit tests.

git-svn-id: https://svn.dealii.org/trunk@31532 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Sun, 3 Nov 2013 13:36:39 +0000 (13:36 +0000)]

add output function for 64bit tests

git-svn-id: https://svn.dealii.org/trunk@31531 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sun, 3 Nov 2013 12:07:03 +0000 (12:07 +0000)]

run_testsuite.cmake: Provide a possibility to append a string to CTEST_BUILD_NAME

git-svn-id: https://svn.dealii.org/trunk@31530 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sun, 3 Nov 2013 10:56:42 +0000 (10:56 +0000)]

Fix some $Id$s

git-svn-id: https://svn.dealii.org/trunk@31529 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sun, 3 Nov 2013 10:10:14 +0000 (10:10 +0000)]

And svn properties for some forgotten files

git-svn-id: https://svn.dealii.org/trunk@31528 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sun, 3 Nov 2013 09:58:45 +0000 (09:58 +0000)]

update svn properties

git-svn-id: https://svn.dealii.org/trunk@31527 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sun, 3 Nov 2013 09:27:49 +0000 (09:27 +0000)]

Fixup $Id$ statements

git-svn-id: https://svn.dealii.org/trunk@31526 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sun, 3 Nov 2013 00:39:59 +0000 (00:39 +0000)]

Update a comment

git-svn-id: https://svn.dealii.org/trunk@31525 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sun, 3 Nov 2013 00:38:46 +0000 (00:38 +0000)]

A bit more relaxed...

git-svn-id: https://svn.dealii.org/trunk@31524 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sun, 3 Nov 2013 00:33:24 +0000 (00:33 +0000)]

Bugfix/Improvement: Pass down (almost) all possible configuration options down to cmake

git-svn-id: https://svn.dealii.org/trunk@31523 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sun, 3 Nov 2013 00:10:13 +0000 (00:10 +0000)]

Bugfix: We need different delimeters for Windows and CYGWIN. *sigh*

git-svn-id: https://svn.dealii.org/trunk@31522 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Sat, 2 Nov 2013 22:16:07 +0000 (22:16 +0000)]

quicktests: make work with mpich

git-svn-id: https://svn.dealii.org/trunk@31521 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Sat, 2 Nov 2013 20:55:01 +0000 (20:55 +0000)]

quicktests: only run if supported

git-svn-id: https://svn.dealii.org/trunk@31520 0785d39b-7218-0410-832d-ea1e28bc413d

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