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https://gitweb.dealii.org/ - dealii.git/log
Wolfgang Bangerth [Wed, 9 Oct 2013 12:30:55 +0000 (12:30 +0000)]
Fix typo.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31183
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Wolfgang Bangerth [Tue, 8 Oct 2013 20:37:11 +0000 (20:37 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31181
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Timo Heister [Tue, 8 Oct 2013 20:02:32 +0000 (20:02 +0000)]
take over r31179 to mainline
git-svn-id: https://svn.dealii.org/trunk@31180
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Timo Heister [Tue, 8 Oct 2013 20:00:04 +0000 (20:00 +0000)]
check return value of MPI_File_open
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31179
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Wolfgang Bangerth [Tue, 8 Oct 2013 19:47:03 +0000 (19:47 +0000)]
Remove outdated svn:ignore.
git-svn-id: https://svn.dealii.org/trunk@31178
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Wolfgang Bangerth [Tue, 8 Oct 2013 19:46:27 +0000 (19:46 +0000)]
Rework.
git-svn-id: https://svn.dealii.org/trunk@31177
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Wolfgang Bangerth [Tue, 8 Oct 2013 19:37:45 +0000 (19:37 +0000)]
Link to appropriate tag files.
git-svn-id: https://svn.dealii.org/trunk@31176
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Wolfgang Bangerth [Tue, 8 Oct 2013 19:36:00 +0000 (19:36 +0000)]
Slightly reword top note.
git-svn-id: https://svn.dealii.org/trunk@31175
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Wolfgang Bangerth [Tue, 8 Oct 2013 19:34:27 +0000 (19:34 +0000)]
Rework.
git-svn-id: https://svn.dealii.org/trunk@31174
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Wolfgang Bangerth [Tue, 8 Oct 2013 19:03:30 +0000 (19:03 +0000)]
Update some of the information at the bottom. The link to DEAL no
longer works, so delete it.
git-svn-id: https://svn.dealii.org/trunk@31173
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Timo Heister [Tue, 8 Oct 2013 14:37:45 +0000 (14:37 +0000)]
add test for write_vtu_in_parallel
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31172
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Wolfgang Bangerth [Tue, 8 Oct 2013 14:18:30 +0000 (14:18 +0000)]
Improve error message.
git-svn-id: https://svn.dealii.org/trunk@31171
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Wolfgang Bangerth [Tue, 8 Oct 2013 12:46:17 +0000 (12:46 +0000)]
Release mutex on the same thread that acquired it, to satisfy POSIX requirements.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31170
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Wolfgang Bangerth [Tue, 8 Oct 2013 12:41:27 +0000 (12:41 +0000)]
Run second part of test only if it's different from the first. Adjust test output.
git-svn-id: https://svn.dealii.org/trunk@31169
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Wolfgang Bangerth [Tue, 8 Oct 2013 00:17:45 +0000 (00:17 +0000)]
Implement bilinear interpolation in a much faster way.
git-svn-id: https://svn.dealii.org/trunk@31168
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Wolfgang Bangerth [Mon, 7 Oct 2013 23:52:01 +0000 (23:52 +0000)]
No longer output the residual to output files.
git-svn-id: https://svn.dealii.org/trunk@31167
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Wolfgang Bangerth [Mon, 7 Oct 2013 23:50:20 +0000 (23:50 +0000)]
Compute locally owned active set as intersection of two sets.
git-svn-id: https://svn.dealii.org/trunk@31166
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Timo Heister [Mon, 7 Oct 2013 21:55:54 +0000 (21:55 +0000)]
enhance SparseMatrix documentation
git-svn-id: https://svn.dealii.org/trunk@31165
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Wolfgang Bangerth [Mon, 7 Oct 2013 14:51:55 +0000 (14:51 +0000)]
Minor adjustments.
git-svn-id: https://svn.dealii.org/trunk@31164
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Wolfgang Bangerth [Mon, 7 Oct 2013 13:43:08 +0000 (13:43 +0000)]
Patch by Mayank Subharwal and Andreas Putz: Make GridIn read VTK files as well.
git-svn-id: https://svn.dealii.org/trunk@31163
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Wolfgang Bangerth [Mon, 7 Oct 2013 13:28:39 +0000 (13:28 +0000)]
Search first for the file with its complete given name. I.e., if someone
searches for <mesh.vtk> with additional suffix <.vtk>, then still find the
file if it exists before trying <mesh.vtk.vtk>.
git-svn-id: https://svn.dealii.org/trunk@31162
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Wolfgang Bangerth [Mon, 7 Oct 2013 03:42:41 +0000 (03:42 +0000)]
Rewrite in parts.
git-svn-id: https://svn.dealii.org/trunk@31161
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Wolfgang Bangerth [Mon, 7 Oct 2013 03:08:28 +0000 (03:08 +0000)]
Remove extraneous space.
git-svn-id: https://svn.dealii.org/trunk@31160
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Wolfgang Bangerth [Mon, 7 Oct 2013 02:54:40 +0000 (02:54 +0000)]
Link in step-42.
git-svn-id: https://svn.dealii.org/trunk@31159
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Wolfgang Bangerth [Mon, 7 Oct 2013 02:42:34 +0000 (02:42 +0000)]
Update svn:ignore.
git-svn-id: https://svn.dealii.org/trunk@31158
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Wolfgang Bangerth [Mon, 7 Oct 2013 02:35:51 +0000 (02:35 +0000)]
Finish documenting.
git-svn-id: https://svn.dealii.org/trunk@31157
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Wolfgang Bangerth [Sun, 6 Oct 2013 21:03:56 +0000 (21:03 +0000)]
Comment on solve_newton().
git-svn-id: https://svn.dealii.org/trunk@31155
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Matthias Maier [Sun, 6 Oct 2013 20:00:42 +0000 (20:00 +0000)]
Bugfix: Pick up the Fortran interface for lapack correctly
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31154
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Matthias Maier [Sun, 6 Oct 2013 19:41:34 +0000 (19:41 +0000)]
Bugfix: build_tests should be recompiled if the underlying library changes...
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31153
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Wolfgang Bangerth [Sun, 6 Oct 2013 18:21:36 +0000 (18:21 +0000)]
Fix a bug introduced in the previous version.
git-svn-id: https://svn.dealii.org/trunk@31152
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Matthias Maier [Sat, 5 Oct 2013 22:37:33 +0000 (22:37 +0000)]
Some more documentation
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31151
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Matthias Maier [Sat, 5 Oct 2013 17:25:48 +0000 (17:25 +0000)]
First part of documentation
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31150
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Toby D. Young [Sat, 5 Oct 2013 16:08:10 +0000 (16:08 +0000)]
Switch Assert to AssertThrow where a PETScInternalError can occur.
git-svn-id: https://svn.dealii.org/trunk@31149
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Matthias Maier [Sat, 5 Oct 2013 15:03:16 +0000 (15:03 +0000)]
Doc: Update CMake documentation. Add a section about configuration and
building, reflect recent changes
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31148
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Matthias Maier [Sat, 5 Oct 2013 13:01:10 +0000 (13:01 +0000)]
Doc: Rearrange two paragraphs
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31147
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Matthias Maier [Sat, 5 Oct 2013 12:59:41 +0000 (12:59 +0000)]
Update readme on Windows support and minimal gcc version
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31146
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Matthias Maier [Sat, 5 Oct 2013 12:32:43 +0000 (12:32 +0000)]
Merge trunk into branch_port_the_testsuite
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31145
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Wolfgang Bangerth [Sat, 5 Oct 2013 12:17:40 +0000 (12:17 +0000)]
Move forward.
git-svn-id: https://svn.dealii.org/trunk@31144
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Guido Kanschat [Sat, 5 Oct 2013 11:48:41 +0000 (11:48 +0000)]
add Stephan's paper
git-svn-id: https://svn.dealii.org/trunk@31143
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Matthias Maier [Sat, 5 Oct 2013 11:46:11 +0000 (11:46 +0000)]
Make clang happy
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31142
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Wolfgang Bangerth [Sat, 5 Oct 2013 11:32:20 +0000 (11:32 +0000)]
Indent.
git-svn-id: https://svn.dealii.org/trunk@31141
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Toby D. Young [Sat, 5 Oct 2013 03:52:30 +0000 (03:52 +0000)]
Add a strangely missing AssertThrow.
git-svn-id: https://svn.dealii.org/trunk@31139
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Matthias Maier [Sat, 5 Oct 2013 00:50:10 +0000 (00:50 +0000)]
Print a detailed info message
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31135
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Wolfgang Bangerth [Fri, 4 Oct 2013 23:04:52 +0000 (23:04 +0000)]
Last changes for the day. Good progress :-)
git-svn-id: https://svn.dealii.org/trunk@31132
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Wolfgang Bangerth [Fri, 4 Oct 2013 22:32:36 +0000 (22:32 +0000)]
More documentation.
git-svn-id: https://svn.dealii.org/trunk@31131
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Wolfgang Bangerth [Fri, 4 Oct 2013 21:33:36 +0000 (21:33 +0000)]
More documentation.
git-svn-id: https://svn.dealii.org/trunk@31130
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Matthias Maier [Fri, 4 Oct 2013 21:32:57 +0000 (21:32 +0000)]
Update TODO
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31129
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Matthias Maier [Fri, 4 Oct 2013 21:30:23 +0000 (21:30 +0000)]
Only run these tests if functionparser is available
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31128
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Matthias Maier [Fri, 4 Oct 2013 21:08:43 +0000 (21:08 +0000)]
Small Bugfixes and Cleanup
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31127
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Matthias Maier [Fri, 4 Oct 2013 20:30:03 +0000 (20:30 +0000)]
Proper fix, some final rearrangement.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31126
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Wolfgang Bangerth [Fri, 4 Oct 2013 19:58:21 +0000 (19:58 +0000)]
Make run again in parallel.
git-svn-id: https://svn.dealii.org/trunk@31125
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Wolfgang Bangerth [Fri, 4 Oct 2013 19:32:41 +0000 (19:32 +0000)]
Remove unused variables.
git-svn-id: https://svn.dealii.org/trunk@31124
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Wolfgang Bangerth [Fri, 4 Oct 2013 18:37:12 +0000 (18:37 +0000)]
Undo 31119 and fix it by doing the same thing in debug and release mode.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31123
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Timo Heister [Fri, 4 Oct 2013 18:23:40 +0000 (18:23 +0000)]
better way to fix release mode tests
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31122
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Timo Heister [Fri, 4 Oct 2013 18:21:34 +0000 (18:21 +0000)]
fix test in release mode
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31121
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Timo Heister [Fri, 4 Oct 2013 18:20:58 +0000 (18:20 +0000)]
fix test in release mode
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31120
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Timo Heister [Fri, 4 Oct 2013 18:05:29 +0000 (18:05 +0000)]
test has different output in release mode
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31119
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Wolfgang Bangerth [Fri, 4 Oct 2013 13:05:10 +0000 (13:05 +0000)]
Some compilers apparently want to have a full declaration of ConstraintMatrix
if they see it in a default argument.
git-svn-id: https://svn.dealii.org/trunk@31118
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Wolfgang Bangerth [Fri, 4 Oct 2013 13:03:44 +0000 (13:03 +0000)]
Qualify strcpy with std::
git-svn-id: https://svn.dealii.org/trunk@31117
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Matthias Maier [Fri, 4 Oct 2013 07:47:41 +0000 (07:47 +0000)]
Quick fix
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31116
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Martin Kronbichler [Fri, 4 Oct 2013 07:29:31 +0000 (07:29 +0000)]
Improve exception messages
git-svn-id: https://svn.dealii.org/trunk@31115
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Wolfgang Bangerth [Thu, 3 Oct 2013 23:52:35 +0000 (23:52 +0000)]
Work around a POSIX violation.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31114
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Matthias Maier [Thu, 3 Oct 2013 23:31:42 +0000 (23:31 +0000)]
Remove obsolete file
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31113
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Matthias Maier [Thu, 3 Oct 2013 23:31:04 +0000 (23:31 +0000)]
Port new tests
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31112
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Matthias Maier [Thu, 3 Oct 2013 23:31:02 +0000 (23:31 +0000)]
Merge trunk into branch_port_the_testsuite
Conflicts:
tests/deal.II/grid_tools_05.output
tests/deal.II/grid_tools_05/cmp/generic
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31111
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Matthias Maier [Thu, 3 Oct 2013 23:19:13 +0000 (23:19 +0000)]
Bugfix
git-svn-id: https://svn.dealii.org/trunk@31110
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Matthias Maier [Thu, 3 Oct 2013 23:17:06 +0000 (23:17 +0000)]
Bugfix: resolve issue 105
git-svn-id: https://svn.dealii.org/trunk@31109
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Wolfgang Bangerth [Thu, 3 Oct 2013 23:13:32 +0000 (23:13 +0000)]
Clear buffer at the end of the program.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31108
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Matthias Maier [Thu, 3 Oct 2013 22:06:49 +0000 (22:06 +0000)]
Bugfix: Only include libparmetis to the link interface if its likely that it belongs to the metis library..
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31107
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Matthias Maier [Thu, 3 Oct 2013 21:32:19 +0000 (21:32 +0000)]
Bugfix: Remove obsolete code
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31106
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Wolfgang Bangerth [Thu, 3 Oct 2013 20:39:51 +0000 (20:39 +0000)]
Rename a few variables. Initialize vectors with vector sets and communicators, rather than other vectors, to make clear that the vector is not in fact copied, and to make it clearer what index set is being used.
git-svn-id: https://svn.dealii.org/trunk@31105
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Wolfgang Bangerth [Thu, 3 Oct 2013 20:08:21 +0000 (20:08 +0000)]
Remove file accidentally added.
git-svn-id: https://svn.dealii.org/trunk@31104
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Wolfgang Bangerth [Thu, 3 Oct 2013 20:07:55 +0000 (20:07 +0000)]
Remove one variable whose value is always equal to another.
git-svn-id: https://svn.dealii.org/trunk@31103
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Wolfgang Bangerth [Thu, 3 Oct 2013 20:00:34 +0000 (20:00 +0000)]
Remove one variable whose value is always equal to another.
git-svn-id: https://svn.dealii.org/trunk@31102
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Timo Heister [Thu, 3 Oct 2013 19:19:28 +0000 (19:19 +0000)]
fix script
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31101
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Wolfgang Bangerth [Thu, 3 Oct 2013 19:11:07 +0000 (19:11 +0000)]
Correct output for now higher precision.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31100
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Timo Heister [Thu, 3 Oct 2013 18:02:44 +0000 (18:02 +0000)]
fix test: release mode does not sort indices for performance reasons
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31099
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Timo Heister [Thu, 3 Oct 2013 17:56:15 +0000 (17:56 +0000)]
change metis test output. probably due to newer metis version
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31098
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Timo Heister [Thu, 3 Oct 2013 17:52:06 +0000 (17:52 +0000)]
fix test
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31096
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Toby D. Young [Thu, 3 Oct 2013 17:47:32 +0000 (17:47 +0000)]
do a todo - use PetscReal where real_type is needed.
git-svn-id: https://svn.dealii.org/trunk@31095
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Wolfgang Bangerth [Thu, 3 Oct 2013 17:11:10 +0000 (17:11 +0000)]
Some more tests whose outputs have changed.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31094
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Wolfgang Bangerth [Thu, 3 Oct 2013 16:15:43 +0000 (16:15 +0000)]
Commit output files that have mysteriously changed on the branch.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31091
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Wolfgang Bangerth [Thu, 3 Oct 2013 14:27:39 +0000 (14:27 +0000)]
Commit output files that have mysteriously changed on the branch.
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31088
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Toby D. Young [Thu, 3 Oct 2013 13:38:48 +0000 (13:38 +0000)]
Set default problem type for SLEPc - this should be the GNHEP.
git-svn-id: https://svn.dealii.org/trunk@31084
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Timo Heister [Thu, 3 Oct 2013 01:47:18 +0000 (01:47 +0000)]
grouping and repeat header
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31082
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Timo Heister [Thu, 3 Oct 2013 01:38:34 +0000 (01:38 +0000)]
add comment
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31081
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Timo Heister [Thu, 3 Oct 2013 01:36:20 +0000 (01:36 +0000)]
optional argument for makereport.py: branch name
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31080
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Matthias Maier [Wed, 2 Oct 2013 22:09:47 +0000 (22:09 +0000)]
Remove obsolete directories
git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31079
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Timo Heister [Wed, 2 Oct 2013 18:25:01 +0000 (18:25 +0000)]
add to changelog
git-svn-id: https://svn.dealii.org/trunk@31078
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Timo Heister [Wed, 2 Oct 2013 17:59:44 +0000 (17:59 +0000)]
do not use n_default_threads but n_threads()
git-svn-id: https://svn.dealii.org/trunk@31077
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Timo Heister [Wed, 2 Oct 2013 17:52:30 +0000 (17:52 +0000)]
replace n_default_threads by n_threads()
git-svn-id: https://svn.dealii.org/trunk@31076
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Timo Heister [Wed, 2 Oct 2013 17:51:27 +0000 (17:51 +0000)]
leave some comments and todos
git-svn-id: https://svn.dealii.org/trunk@31075
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Timo Heister [Wed, 2 Oct 2013 17:40:44 +0000 (17:40 +0000)]
do not use n_default_threads
git-svn-id: https://svn.dealii.org/trunk@31074
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Timo Heister [Wed, 2 Oct 2013 17:40:15 +0000 (17:40 +0000)]
introduce new n_threads(), deprecate n_default_threads
git-svn-id: https://svn.dealii.org/trunk@31073
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Timo Heister [Wed, 2 Oct 2013 17:35:40 +0000 (17:35 +0000)]
remove references to n_default_threads() in error_estimator.h that are ignored anyway.
git-svn-id: https://svn.dealii.org/trunk@31072
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Timo Heister [Wed, 2 Oct 2013 17:30:01 +0000 (17:30 +0000)]
only use TBB in workstream if we are allowed to use more than one thread
git-svn-id: https://svn.dealii.org/trunk@31071
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Bruno Turcksin [Wed, 2 Oct 2013 17:00:47 +0000 (17:00 +0000)]
Now when WorkStream uses graph coloring and that there are not enough elements in a color, the elements are aggregated and copied serially.
git-svn-id: https://svn.dealii.org/trunk@31070
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Wolfgang Bangerth [Wed, 2 Oct 2013 15:06:52 +0000 (15:06 +0000)]
Make it compile.
git-svn-id: https://svn.dealii.org/trunk@31069
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Wolfgang Bangerth [Wed, 2 Oct 2013 15:03:54 +0000 (15:03 +0000)]
Slightly more documentation. Leave a few TODOs in the introduction.
git-svn-id: https://svn.dealii.org/trunk@31068
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Matthias Maier [Wed, 2 Oct 2013 00:47:35 +0000 (00:47 +0000)]
Cherry-pick revisions 31065 and 31066 from branch_port_the_testsuite
git-svn-id: https://svn.dealii.org/trunk@31067
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