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bangerth [Fri, 17 Dec 2010 00:32:31 +0000 (00:32 +0000)]

Remove executable property.

git-svn-id: https://svn.dealii.org/trunk@22990 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 16 Dec 2010 23:58:52 +0000 (23:58 +0000)]

Another testcase.

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bangerth [Thu, 16 Dec 2010 23:45:10 +0000 (23:45 +0000)]

New test.

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bangerth [Thu, 16 Dec 2010 23:31:18 +0000 (23:31 +0000)]

Make the awkward map a returned value, rather than a reference argument.

git-svn-id: https://svn.dealii.org/trunk@22987 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 16 Dec 2010 23:28:02 +0000 (23:28 +0000)]

Fix missing std::

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bangerth [Thu, 16 Dec 2010 21:42:39 +0000 (21:42 +0000)]

Explain what we are seeing.

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bangerth [Thu, 16 Dec 2010 21:25:41 +0000 (21:25 +0000)]

Specialize functions for 3d.

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bangerth [Thu, 16 Dec 2010 21:19:10 +0000 (21:19 +0000)]

Set properties.

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bangerth [Thu, 16 Dec 2010 21:18:52 +0000 (21:18 +0000)]

Set properties.

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bangerth [Thu, 16 Dec 2010 21:12:08 +0000 (21:12 +0000)]

Set props.

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bangerth [Thu, 16 Dec 2010 20:57:53 +0000 (20:57 +0000)]

Use a better solver.

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bangerth [Thu, 16 Dec 2010 20:57:28 +0000 (20:57 +0000)]

Minor doc updates.

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bangerth [Thu, 16 Dec 2010 20:45:03 +0000 (20:45 +0000)]

Make this whole thing more similar to step-4.

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bangerth [Thu, 16 Dec 2010 19:00:01 +0000 (19:00 +0000)]

Avoid problem with markup.

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bangerth [Thu, 16 Dec 2010 18:56:32 +0000 (18:56 +0000)]

DataOut was not prepared to deal with processors that have no locally owned cells at all. Once fixed, DataOutBase was not prepared to deal with no patches. Fix this.

git-svn-id: https://svn.dealii.org/trunk@22976 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 16 Dec 2010 18:49:59 +0000 (18:49 +0000)]

Use proper syntax in test.

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bangerth [Thu, 16 Dec 2010 18:40:04 +0000 (18:40 +0000)]

Fix latex markup problem.

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bangerth [Wed, 15 Dec 2010 16:34:57 +0000 (16:34 +0000)]

List Andrea and Seba.

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bangerth [Wed, 15 Dec 2010 15:48:16 +0000 (15:48 +0000)]

Increase wait time even more...

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bangerth [Wed, 15 Dec 2010 15:44:51 +0000 (15:44 +0000)]

Only allocate memory for the direction flags if we really need them, i.e. for the codim>0 case.

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bangerth [Wed, 15 Dec 2010 15:39:39 +0000 (15:39 +0000)]

Simplify testcase slightly.

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bangerth [Wed, 15 Dec 2010 15:38:12 +0000 (15:38 +0000)]

Avoid a warning when instantiating Tensor<1,0>.

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bangerth [Wed, 15 Dec 2010 15:37:41 +0000 (15:37 +0000)]

Simplify code some more.

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bangerth [Wed, 15 Dec 2010 15:31:39 +0000 (15:31 +0000)]

Add to the documentation.

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bangerth [Wed, 15 Dec 2010 15:23:18 +0000 (15:23 +0000)]

Make code a bit simpler to read.

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bangerth [Wed, 15 Dec 2010 14:57:09 +0000 (14:57 +0000)]

New test that currently fails.

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bangerth [Wed, 15 Dec 2010 14:49:54 +0000 (14:49 +0000)]

Remove an unused variable.

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bangerth [Wed, 15 Dec 2010 14:14:07 +0000 (14:14 +0000)]

Fix typos.

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bangerth [Tue, 14 Dec 2010 06:11:30 +0000 (06:11 +0000)]

Multiply WALLTIME with the number of processors. Let's see if that gets the
number of spurious failures back down.

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pauletti [Sat, 11 Dec 2010 22:36:51 +0000 (22:36 +0000)]

Minor edit in direction_flags

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bangerth [Fri, 10 Dec 2010 16:46:14 +0000 (16:46 +0000)]

Increase the timeout since we are on multicore systems.

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bangerth [Fri, 10 Dec 2010 13:55:55 +0000 (13:55 +0000)]

Add Seba.

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bangerth [Fri, 10 Dec 2010 13:17:55 +0000 (13:17 +0000)]

Install a thread that terminates the program after a time determined
by the WALLTIME environment variable. This kills the program in the
case of deadlocks, rather than letting it hang forever. This is
necessary since the time limit we specify with 'ulimit' only affects
CPU time, not actual wall time.

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bangerth [Fri, 10 Dec 2010 13:16:44 +0000 (13:16 +0000)]

Also set the time limit as an environment variable that programs can query.

git-svn-id: https://svn.dealii.org/trunk@22957 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 10 Dec 2010 04:25:16 +0000 (04:25 +0000)]

Rename image file.

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bangerth [Fri, 10 Dec 2010 04:04:50 +0000 (04:04 +0000)]

Add Luca's text.

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bangerth [Fri, 10 Dec 2010 03:02:54 +0000 (03:02 +0000)]

Link to step-38.

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bangerth [Fri, 10 Dec 2010 03:00:24 +0000 (03:00 +0000)]

Fix typo.

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bangerth [Fri, 10 Dec 2010 02:59:25 +0000 (02:59 +0000)]

Link to step-38.

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pauletti [Thu, 9 Dec 2010 17:06:19 +0000 (17:06 +0000)]

FEValues with mapping Q1, now uses direction_flag to return the
oriented normal for meshes of dim<spacedim

git-svn-id: https://svn.dealii.org/trunk@22951 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 9 Dec 2010 15:22:17 +0000 (15:22 +0000)]

One more test.

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bangerth [Thu, 9 Dec 2010 14:02:18 +0000 (14:02 +0000)]

New test.

git-svn-id: https://svn.dealii.org/trunk@22949 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 9 Dec 2010 11:22:21 +0000 (11:22 +0000)]

fix typo and remove unused variable.

git-svn-id: https://svn.dealii.org/trunk@22948 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 9 Dec 2010 02:05:54 +0000 (02:05 +0000)]

New test.

git-svn-id: https://svn.dealii.org/trunk@22947 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 9 Dec 2010 01:40:25 +0000 (01:40 +0000)]

Document direction flags better.

git-svn-id: https://svn.dealii.org/trunk@22946 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 9 Dec 2010 01:37:18 +0000 (01:37 +0000)]

Fix bad markup.

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pauletti [Wed, 8 Dec 2010 20:30:57 +0000 (20:30 +0000)]

Implementation of direction_flags for dim=spacedim-1 meshes

git-svn-id: https://svn.dealii.org/trunk@22944 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 8 Dec 2010 04:45:40 +0000 (04:45 +0000)]

Upon closer thought, there is actually no point in serializing the contents of the Subscriptor base class since we don't want to later overwrite whoever has subscribed to an object when reading it back in.

git-svn-id: https://svn.dealii.org/trunk@22943 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 8 Dec 2010 02:59:21 +0000 (02:59 +0000)]

Rather than re-implementing things use them from the common header file.

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bangerth [Wed, 8 Dec 2010 02:56:55 +0000 (02:56 +0000)]

Properly implement operator== for ParameterHandler.

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bangerth [Wed, 8 Dec 2010 02:55:59 +0000 (02:55 +0000)]

OK, this was one of the weirder bugs I've found recently: when we do
#include <vector>
we expect that either (i) make_dependencies ignores this dependence
because it can't find the file <vector> anywhere, e.g. because it
doesn't know the path to system header files, or (ii) enter the proper
dependency to the file if it does know where to find the file.

But what happened in the tests/serialization directory is that it
found a *subdirectory* named 'vector' and added it to the list of
dependencies. And 'make' then tries to re-build this directory by
compiling (using an implicit rule built into 'make') the executable
'vector' from 'vector.cc', which fails because the implicit rule of
course doesn't know anything about where deal.II include files reside,
etc. Completely strange.

So the solution is to ignore directories, if we happen to find
them. In the process, I also replaced the use of std::istream to
test-open a file (which weirdly succeeds for directories, although you
can't read from it) by uses of stat(), which should be faster as well.

git-svn-id: https://svn.dealii.org/trunk@22940 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 7 Dec 2010 21:18:13 +0000 (21:18 +0000)]

Avoid a warning.

git-svn-id: https://svn.dealii.org/trunk@22939 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 7 Dec 2010 19:16:55 +0000 (19:16 +0000)]

Fix another failure caused by assuming that the left neighbor of the right neighbor is the current cell.

git-svn-id: https://svn.dealii.org/trunk@22938 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 7 Dec 2010 13:46:23 +0000 (13:46 +0000)]

When codim=1, we can't take for granted that the left neighbor of the right neighbor is the current cell.

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bangerth [Tue, 7 Dec 2010 04:04:52 +0000 (04:04 +0000)]

Mention serialization.

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bangerth [Tue, 7 Dec 2010 04:02:33 +0000 (04:02 +0000)]

List codim-1 changes.

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bangerth [Tue, 7 Dec 2010 04:00:51 +0000 (04:00 +0000)]

Move entries to their correct section. Remove entry on step-38 for now since
it isn't quite finished yet.

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bangerth [Tue, 7 Dec 2010 03:50:32 +0000 (03:50 +0000)]

Add necessary output directories.

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bangerth [Tue, 7 Dec 2010 03:39:58 +0000 (03:39 +0000)]

Be less conservative when comparing sparsity patterns.

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bangerth [Tue, 7 Dec 2010 03:38:23 +0000 (03:38 +0000)]

No need any more to provide operator== in the test file since it is now available in the class itself.

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rao [Tue, 7 Dec 2010 02:28:08 +0000 (02:28 +0000)]

Modify test for vector.

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rao [Mon, 6 Dec 2010 19:56:53 +0000 (19:56 +0000)]

Add new tests for serialization.

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rao [Mon, 6 Dec 2010 18:44:56 +0000 (18:44 +0000)]

Add functions for serialization.

git-svn-id: https://svn.dealii.org/trunk@22928 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 6 Dec 2010 13:55:13 +0000 (13:55 +0000)]

Fix copy of matrix values.

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bangerth [Mon, 6 Dec 2010 02:23:18 +0000 (02:23 +0000)]

Remove a class that is now no longer needed.

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bangerth [Mon, 6 Dec 2010 02:08:23 +0000 (02:08 +0000)]

Avoid output to the screen.

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bangerth [Mon, 6 Dec 2010 00:37:52 +0000 (00:37 +0000)]

Set properly.

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bangerth [Mon, 6 Dec 2010 00:34:51 +0000 (00:34 +0000)]

Set svn:ignore.

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bangerth [Mon, 6 Dec 2010 00:34:04 +0000 (00:34 +0000)]

New test.

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bangerth [Mon, 6 Dec 2010 00:26:45 +0000 (00:26 +0000)]

Neighborship information is unreliable in the codim-1 case for 1d
meshes. Avoid using it.

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bangerth [Sun, 5 Dec 2010 22:50:08 +0000 (22:50 +0000)]

Make DoFRenumbering::component_wise work also for the codim=1 case.

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kanschat [Sun, 5 Dec 2010 18:06:54 +0000 (18:06 +0000)]

update documentation

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kanschat [Sun, 5 Dec 2010 18:03:29 +0000 (18:03 +0000)]

add initializer for Quadrature

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heltai [Sun, 5 Dec 2010 15:12:56 +0000 (15:12 +0000)]

Fixed integrate difference, and updated step-38 to reflect the new functionality.

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heltai [Sun, 5 Dec 2010 15:03:14 +0000 (15:03 +0000)]

Added test for gradient differences on codim one surfaces.

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heister [Fri, 3 Dec 2010 22:53:42 +0000 (22:53 +0000)]

New test for PETSc vectors.

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heister [Fri, 3 Dec 2010 22:43:02 +0000 (22:43 +0000)]

Added a new constructor for PETScWrappers::Vector that takes an existing PETSc Vec that was created by the user and is only wrapped for usage.

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bangerth [Fri, 3 Dec 2010 19:18:50 +0000 (19:18 +0000)]

Also revert r22891 for the same reason. The changes that caused the failure were in configure.in/aclocal.m4 before that patch.

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bangerth [Fri, 3 Dec 2010 16:48:30 +0000 (16:48 +0000)]

Revert 22903 since it make the autotester choke.

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heltai [Fri, 3 Dec 2010 16:36:49 +0000 (16:36 +0000)]

Added tutorial step-38 on Laplace Beltrami Operator.

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heister [Fri, 3 Dec 2010 13:00:45 +0000 (13:00 +0000)]

improve formatting in tutorial overview.

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bangerth [Fri, 3 Dec 2010 05:09:13 +0000 (05:09 +0000)]

Discuss some more.

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bangerth [Fri, 3 Dec 2010 05:02:31 +0000 (05:02 +0000)]

Fix typo.

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bangerth [Thu, 2 Dec 2010 19:22:33 +0000 (19:22 +0000)]

Rather than clumsily computing derived quantities within the finite element spaces, use the DataPostprocessor facilities to do so. This also yields a nice implementation of the viscous heating terms.

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bangerth [Thu, 2 Dec 2010 16:47:07 +0000 (16:47 +0000)]

Whitespace changes.

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bangerth [Thu, 2 Dec 2010 16:45:55 +0000 (16:45 +0000)]

Make it follow usual style.

git-svn-id: https://svn.dealii.org/trunk@22905 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 2 Dec 2010 16:42:00 +0000 (16:42 +0000)]

Use better gravity model as described in the introduction. Allow graphical output also for more processors but more infrequently.

git-svn-id: https://svn.dealii.org/trunk@22904 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 2 Dec 2010 13:42:00 +0000 (13:42 +0000)]

Regenerate.

git-svn-id: https://svn.dealii.org/trunk@22903 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 2 Dec 2010 11:37:40 +0000 (11:37 +0000)]

improve PETSc compiler mismatch error messages.

git-svn-id: https://svn.dealii.org/trunk@22902 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Thu, 2 Dec 2010 11:10:12 +0000 (11:10 +0000)]

Fix get compiler bug in mpi consistency for PETSc 2.3.x

git-svn-id: https://svn.dealii.org/trunk@22901 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Thu, 2 Dec 2010 11:03:21 +0000 (11:03 +0000)]

Fix bug in mpi consistency for PETSc 2.3.x

git-svn-id: https://svn.dealii.org/trunk@22900 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Thu, 2 Dec 2010 10:48:05 +0000 (10:48 +0000)]

Fix bug in mpi consistency for PETSc 2.3.x

git-svn-id: https://svn.dealii.org/trunk@22899 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Thu, 2 Dec 2010 08:15:41 +0000 (08:15 +0000)]

Update news on publication

git-svn-id: https://svn.dealii.org/trunk@22898 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 2 Dec 2010 05:00:34 +0000 (05:00 +0000)]

A better gravity model.

git-svn-id: https://svn.dealii.org/trunk@22897 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 2 Dec 2010 00:34:04 +0000 (00:34 +0000)]

Clarify what I mean by center.

git-svn-id: https://svn.dealii.org/trunk@22896 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 2 Dec 2010 00:33:26 +0000 (00:33 +0000)]

Minor formula fix.

git-svn-id: https://svn.dealii.org/trunk@22895 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 1 Dec 2010 23:47:10 +0000 (23:47 +0000)]

Remove a lot of debug and timing output stuff.

git-svn-id: https://svn.dealii.org/trunk@22894 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 1 Dec 2010 20:21:18 +0000 (20:21 +0000)]

Fix a couple places that cppcheck marked up.

git-svn-id: https://svn.dealii.org/trunk@22893 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 1 Dec 2010 14:34:26 +0000 (14:34 +0000)]

Disable the following warning in xlC: 1540-2909 (W) The subscript 2 is out of range. The only valid subscript is 0.

git-svn-id: https://svn.dealii.org/trunk@22892 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 1 Dec 2010 14:27:37 +0000 (14:27 +0000)]

Using --without-umfpack is equivalent to --with-umfpack=no and made ./configure believe that we should look for an external umfpack version at path 'no'.

git-svn-id: https://svn.dealii.org/trunk@22891 0785d39b-7218-0410-832d-ea1e28bc413d

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