]>
https://gitweb.dealii.org/ - dealii.git/log
David Wells [Thu, 19 May 2022 17:06:12 +0000 (13:06 -0400)]
Add a comment describing our boost definitions.
Martin Kronbichler [Thu, 19 May 2022 13:11:32 +0000 (15:11 +0200)]
Merge pull request #13741 from drwells/more-sundials-6
Fix sundials 6 tests, part 1
David Wells [Thu, 19 May 2022 13:01:08 +0000 (09:01 -0400)]
Merge pull request #13735 from luca-heltai/cgal-support-c3t3
CGAL C3T3 to deal.II Triangulation.
David Wells [Thu, 19 May 2022 12:56:17 +0000 (08:56 -0400)]
Merge pull request #13752 from marcfehling/fixtest-consensus
Fix compute_index_owner_01.
Martin Kronbichler [Thu, 19 May 2022 06:50:48 +0000 (08:50 +0200)]
Merge pull request #13755 from kronbichler/test_robustness
Make multigrid test more robust
Marc Fehling [Tue, 17 May 2022 21:04:50 +0000 (15:04 -0600)]
Fix compute_index_owner_01.
David Wells [Wed, 18 May 2022 14:22:34 +0000 (10:22 -0400)]
Merge pull request #13756 from kronbichler/add_instantiation
MatrixFree: Add instantiation for ConstraintValues::insert_entries
Martin Kronbichler [Wed, 18 May 2022 08:09:47 +0000 (10:09 +0200)]
MatrixFree: Add instantiation for ConstraintValues::insert_entries
Martin Kronbichler [Wed, 18 May 2022 07:56:04 +0000 (09:56 +0200)]
Also apply robust setup to other test
Martin Kronbichler [Wed, 18 May 2022 07:45:15 +0000 (09:45 +0200)]
Make multigrid test more robust
Marc Fehling [Wed, 18 May 2022 00:18:38 +0000 (18:18 -0600)]
Merge pull request #13750 from marcfehling/fixtest-petsc
Update petsc test output.
Marc Fehling [Tue, 17 May 2022 20:35:29 +0000 (14:35 -0600)]
Update petsc test output.
Luca Heltai [Tue, 17 May 2022 19:32:43 +0000 (22:32 +0300)]
Code review.
Luca Heltai [Mon, 16 May 2022 16:59:53 +0000 (19:59 +0300)]
CGAL C3T3 to deal.II Triangulation.
David Wells [Mon, 16 May 2022 02:44:45 +0000 (22:44 -0400)]
Clean up the declaration of make_nvector_view().
David Wells [Sun, 15 May 2022 22:02:56 +0000 (18:02 -0400)]
Use SUNContext as needed in SUNDIALS tests, part 1.
This new context object is mostly for logging (i.e., its API is for profiling
and logging only at the moment) so we just need to make sure it exists.
Martin Kronbichler [Tue, 17 May 2022 10:36:56 +0000 (12:36 +0200)]
Merge pull request #13748 from simonsticko/assert_mapping_cartesian
Assert that the incoming cell is Cartesian in MappingCartesian
Martin Kronbichler [Tue, 17 May 2022 10:36:05 +0000 (12:36 +0200)]
Merge pull request #13749 from simonsticko/rename_ExcReclassifyNotCalled
Rename an exception
Peter Munch [Tue, 17 May 2022 08:17:46 +0000 (10:17 +0200)]
Merge pull request #13747 from tamiko/fix_step_75_emplace
Step-75: use well-formed deleter
Simon Sticko [Tue, 17 May 2022 06:41:09 +0000 (08:41 +0200)]
Assert that the incoming cell is Cartesian in MappingCartesian
Simon Sticko [Tue, 17 May 2022 07:00:54 +0000 (09:00 +0200)]
Rename an exception
To be consistent with the names of the other exceptions.
Matthias Maier [Tue, 17 May 2022 04:29:57 +0000 (23:29 -0500)]
Step-75: use well-formed deleter
LLVM/Clang's libc++ library version 13/14 got stricter by checking
requirements of the deleter, in particular, according to [1] a deleter
must pass the requirement `__shared_ptr_deleter_ctor_reqs` which is
defined as follows:
```
template <class _Dp, class _Pt, class = decltype(declval<_Dp>()(declval<_Pt>()))>
static true_type __well_formed_deleter_test(int);
template <class, class>
static false_type __well_formed_deleter_test(...);
template <class _Dp, class _Pt>
struct __well_formed_deleter : decltype(__well_formed_deleter_test<_Dp, _Pt>(0)) {};
template<class _Dp, class _Tp, class _Yp>
struct __shared_ptr_deleter_ctor_reqs
{
static const bool value = __compatible_with<_Tp, _Yp>::value &&
is_move_constructible<_Dp>::value &&
__well_formed_deleter<_Dp, _Tp*>::value;
};
```
Unfortunately, our construct
```
coarse_grid_triangulations.emplace_back(
const_cast<Triangulation<dim> *>(&(dof_handler.get_triangulation())),
[](auto &) {});
```
does not pass this test. The issue is that the deleter takes a pointer,
not a reference which, so the lambda `[](auto &){}` does not pass above
`__shared_ptr_deleter_ctor_reqs`.
While at it, remove the const cast: `coarse_grid_triangulations` is
declared as a vector holding a `shared_ptr<const Triangulation<dim>>`,
thus we should simply take the address and not convert to a non-const
object.
[1] https://github.com/llvm/llvm-project/blob/main/libcxx/include/__memory/shared_ptr.h
Martin Kronbichler [Tue, 17 May 2022 05:47:20 +0000 (07:47 +0200)]
Merge pull request #13744 from tamiko/transfinite_fix_codim_one
TransfiniteInterpolationManifold: fix codimension one case
Marc Fehling [Tue, 17 May 2022 04:38:27 +0000 (22:38 -0600)]
Merge pull request #13746 from tamiko/fix_typo
base/tensor.h: Fix a typo
Matthias Maier [Tue, 17 May 2022 02:21:36 +0000 (21:21 -0500)]
base/tensor.h: Fix a typo
Matthias Maier [Mon, 16 May 2022 17:51:49 +0000 (12:51 -0500)]
TransfiniteInterpolationManifold: add a test
Daniel Arndt [Mon, 16 May 2022 18:09:17 +0000 (14:09 -0400)]
Merge pull request #13742 from bangerth/typo
Matthias Maier [Mon, 16 May 2022 17:36:16 +0000 (12:36 -0500)]
TransfiniteInterpolationManifold: fix codimension one case
The codimension one case currently fails with an assertion:
```
An error occurred in line <290> of file <source/grid/grid_tools.cc> in function
std::pair<DerivativeForm<1, dim, spacedim>, Tensor<1, spacedim>> dealii::GridTools::affine_cell_approximation(const ArrayView<const Point<spacedim>> &) [dim = 2, spacedim = 3]
The violated condition was:
::dealii::deal_II_exceptions::internals::compare_for_equality(vertices.size(), GeometryInfo<dim>::vertices_per_cell)
Additional information:
Dimension 9 not equal to 4.
```
This is triggered because we take a compatibility branch in case of
`dim < spacedim` (in `include/deal.II/fe/mapping_q_internal.h`):
```
908 if (real_support_points.size() ==
909 GeometryInfo<dim>::vertices_per_cell ||
910 dim < spacedim)
911 {
```
but still initialize the vector `unit_points` by a subdivided quadrature
(which is needed for the default quadratic approximation; in
`source/grid/manifold_lib.cc`):
```
1686 std::vector<Point<dim>> unit_points =
1687 QIterated<dim>(QTrapez<1>(), 2).get_points();
1688 std::vector<Point<spacedim>> real_points(unit_points.size());
```
Fix this by simply initializing `unit_points` with the right number of
interpolation points for the `dim < spacedim` variant.
Wolfgang Bangerth [Mon, 16 May 2022 16:27:48 +0000 (10:27 -0600)]
Fix a typo.
Peter Munch [Mon, 16 May 2022 09:47:34 +0000 (11:47 +0200)]
Merge pull request #13730 from kronbichler/add_test_output_variant
Add another variant for multigrid test
Peter Munch [Mon, 16 May 2022 09:08:53 +0000 (11:08 +0200)]
Merge pull request #13717 from luca-heltai/cgal-compute_boolean_operation
Corefine and compute boolean operations in CGAL
David Wells [Mon, 16 May 2022 02:18:59 +0000 (22:18 -0400)]
Merge pull request #13739 from marcfehling/fixtest_sharedtria_refine
Added missing headers to failing test.
David Wells [Sun, 15 May 2022 22:02:28 +0000 (18:02 -0400)]
Convert "not less than" to "greater than or equal to".
The later is much simpler.
Marc Fehling [Sun, 15 May 2022 22:56:39 +0000 (16:56 -0600)]
Added missing headers to failing test.
Luca Heltai [Sun, 15 May 2022 20:11:25 +0000 (23:11 +0300)]
Fixed documenation.
Peter Munch [Sun, 15 May 2022 19:14:17 +0000 (21:14 +0200)]
Merge pull request #13737 from peterrum/ldv_fix_size
LA:d:V: fix size in the case of shared memory
Luca Heltai [Sun, 15 May 2022 18:49:28 +0000 (21:49 +0300)]
Merge pull request #13738 from gfcas/typo
Fix typo w_cycle
Martin Kronbichler [Sun, 15 May 2022 14:03:47 +0000 (16:03 +0200)]
Merge pull request #13736 from drwells/gcc-12-warnings
Fix some GCC-12 warnings.
Timo Heister [Sun, 15 May 2022 12:02:42 +0000 (08:02 -0400)]
Merge pull request #13732 from tamiko/remove_as_needed
CMake: remove -Wl,--as-needed flag setup
Fabian Castelli [Sun, 15 May 2022 10:59:37 +0000 (12:59 +0200)]
Fix typo w_cycle
Peter Munch [Sun, 15 May 2022 10:13:30 +0000 (12:13 +0200)]
LA:d:V: fix size in the case of shared memory
Marco Feder [Tue, 10 May 2022 16:50:04 +0000 (18:50 +0200)]
Add boolean operations between surface_meshes
David Wells [Sat, 14 May 2022 18:12:24 +0000 (14:12 -0400)]
Simplify some code.
David Wells [Sat, 14 May 2022 18:12:09 +0000 (14:12 -0400)]
Fix some GCC-12 warnings.
Luca Heltai [Sat, 14 May 2022 12:48:14 +0000 (15:48 +0300)]
Merge pull request #13712 from marcfehling/security
Restrict permissions for GITHUB_TOKEN.
Luca Heltai [Sat, 14 May 2022 09:50:41 +0000 (12:50 +0300)]
Merge pull request #13705 from luca-heltai/cgal-surface_mesh-to-coarse_mesh
Create coarse mesh out of a CGAL::Surface_mesh
Peter Munch [Sat, 14 May 2022 07:17:57 +0000 (09:17 +0200)]
Merge pull request #13733 from bangerth/ca-types-4
Avoid double packing/unpacking for CA algorithms.
Peter Munch [Sat, 14 May 2022 07:16:10 +0000 (09:16 +0200)]
Merge pull request #13731 from bangerth/ca-types-3
Simplify the type used by ConsensusAlgorithm in compute_n_point_to_point_communications().
Peter Munch [Sat, 14 May 2022 07:15:28 +0000 (09:15 +0200)]
Merge pull request #13729 from simonsticko/quadrature_initialize
Set is_tensor_product_flag in Quadrature::initialize(..)
Wolfgang Bangerth [Fri, 13 May 2022 22:31:04 +0000 (16:31 -0600)]
Avoid double packing/unpacking for CA algorithms.
Matthias Maier [Fri, 13 May 2022 20:57:15 +0000 (15:57 -0500)]
CMake: remove -Wl,--as-needed flag setup
The issue with the current handling of the --Wl,--as-needed flag is the
fact that we set it internally but later on filter it (unconditionally)
for user projects.
This has the issue that it is currently not possible to set
--Wl,--as-needed by hand when needed.
Thus, let us simply remove the setup and the workarounds.
Wolfgang Bangerth [Fri, 13 May 2022 20:55:11 +0000 (14:55 -0600)]
Simplify the type used by ConsensusAlgorithm in compute_n_point_to_point_communications().
Daniel Arndt [Fri, 13 May 2022 11:33:43 +0000 (13:33 +0200)]
Merge pull request #13722 from bangerth/ca-type-2
Daniel Arndt [Fri, 13 May 2022 10:22:13 +0000 (12:22 +0200)]
Merge pull request #13728 from sebproell/mf-reinit-empty-procs
Martin Kronbichler [Fri, 13 May 2022 10:18:01 +0000 (12:18 +0200)]
Add another variant for multigrid test
Simon Sticko [Fri, 13 May 2022 09:29:11 +0000 (11:29 +0200)]
Set is_tensor_product_flag in Quadrature::initialize(..)
If you first create a quadrature which is a tensor product and then
call initialize with points and weights which does not correspond
to a tensor product, you can make is_tensor_product_flag have the
wrong value. Set the flag in intialize(..) to avoid this.
Sebastian Proell [Thu, 12 May 2022 08:44:41 +0000 (10:44 +0200)]
New test for MatrixFree::reinit with empty procs
Luca Heltai [Fri, 13 May 2022 06:12:51 +0000 (09:12 +0300)]
Merge pull request #13726 from tamiko/silence_warning
CMake: Do not warn about not finding CGAL
Matthias Maier [Thu, 12 May 2022 22:40:02 +0000 (17:40 -0500)]
CMake: Do not warn about not finding CGAL
Newer CMake versions (encountered with CMake 3.20) seem to warn very
verbosely about not finding a package. Let's add the "QUIET" keyword to
the find_package() call to silence the warning.
Matthias Maier [Thu, 12 May 2022 22:01:07 +0000 (17:01 -0500)]
Merge pull request #13723 from kronbichler/fix_cg_interleave
Fix three bugs in interleaved CG method
Matthias Maier [Thu, 12 May 2022 21:59:40 +0000 (16:59 -0500)]
Merge pull request #13724 from kronbichler/simplify_chebyshev
Choose common SFINAE detection path for PreconditionChebyshev
Peter Munch [Thu, 12 May 2022 21:15:02 +0000 (23:15 +0200)]
Merge pull request #13725 from peterrum/mf_fe_nothing_fix
MF: fix if all cells of a process are FE_Nothing
Peter Munch [Thu, 12 May 2022 19:12:21 +0000 (21:12 +0200)]
MF: fix if all cells of a process are FE_Nothing
Martin Kronbichler [Thu, 12 May 2022 16:12:45 +0000 (18:12 +0200)]
Choose common SFINAE detection path for PreconditionChebyshev
Martin Kronbichler [Thu, 12 May 2022 13:40:54 +0000 (15:40 +0200)]
Fix two bugs in interleaved CG method
Wolfgang Bangerth [Thu, 12 May 2022 16:02:58 +0000 (10:02 -0600)]
Do not compress data.
Wolfgang Bangerth [Thu, 12 May 2022 03:04:04 +0000 (21:04 -0600)]
Add a necessary include.
Wolfgang Bangerth [Wed, 11 May 2022 19:03:49 +0000 (13:03 -0600)]
Replace std::vector<RequestType> by RequestType.
Same for AnswerType.
Peter Munch [Wed, 11 May 2022 20:00:19 +0000 (22:00 +0200)]
Merge pull request #13720 from bangerth/ca-type
Rename the template type arguments of the consensus algorithms.
Wolfgang Bangerth [Wed, 11 May 2022 18:52:17 +0000 (12:52 -0600)]
Merge pull request #13719 from drwells/cleanup-duplicated-vertices
Clean up delete_duplicated_vertices() a little.
Marco Feder [Mon, 9 May 2022 22:04:34 +0000 (00:04 +0200)]
Convert CGAL::Surface_mesh to coarse mesh
Wolfgang Bangerth [Wed, 11 May 2022 16:02:47 +0000 (10:02 -0600)]
Rename the template type arguments of the consensus algorithms.
David Wells [Wed, 11 May 2022 14:46:57 +0000 (10:46 -0400)]
Clean up delete_duplicated_vertices() a little.
Wolfgang Bangerth [Wed, 11 May 2022 16:07:18 +0000 (10:07 -0600)]
Merge pull request #13718 from bergbauer/fix-master
Fix master face_no
Peter Munch [Wed, 11 May 2022 15:04:50 +0000 (17:04 +0200)]
Merge pull request #13698 from kronbichler/cg_interleave
Add a data-locality-optimized iteration scheme to SolverCG
Maximilian Bergbauer [Wed, 11 May 2022 14:29:21 +0000 (16:29 +0200)]
Fix master face_no
Martin Kronbichler [Wed, 11 May 2022 14:21:06 +0000 (16:21 +0200)]
Merge pull request #13063 from peterrum/ecl_unstructured_evaluate
Implement FEFaceEvaluation::evaluate() for ECL/unstructured meshes
Martin Kronbichler [Wed, 11 May 2022 14:20:31 +0000 (16:20 +0200)]
Merge pull request #13590 from bergbauer/gradient_hessian_ellipsoid
Add gradient to SignedDistance::Ellipsoid
Martin Kronbichler [Wed, 11 May 2022 14:18:31 +0000 (16:18 +0200)]
Merge pull request #13637 from peterrum/MGTransferBlockGlobalCoarsening
Introduce MGTransferBlockGlobalCoarsening
Martin Kronbichler [Wed, 11 May 2022 14:17:24 +0000 (16:17 +0200)]
Merge pull request #13694 from peterrum/do_interpolate_boundary_values
Generalize do_interpolate_boundary_values() for pyramid and wedge
Daniel Arndt [Wed, 11 May 2022 13:17:13 +0000 (15:17 +0200)]
Merge pull request #13577 from drwells/muparser-pimpl
Martin Kronbichler [Mon, 9 May 2022 19:53:28 +0000 (21:53 +0200)]
Implement second variant for specialized preconditioner
Marc Fehling [Wed, 11 May 2022 04:36:52 +0000 (22:36 -0600)]
Merge pull request #12463 from peterrum/set_dof_values_by_interpolation_assert
Improve asserts in parallel::distributed::SolutionTransfer
Marc Fehling [Wed, 11 May 2022 02:03:49 +0000 (20:03 -0600)]
Merge pull request #13716 from marcfehling/changelog
Adjust changelog for 64bit nonzeros.
Bruno Turcksin [Wed, 11 May 2022 01:54:45 +0000 (21:54 -0400)]
Merge pull request #13631 from CorbinFoucart/python3_binding_cmake_build_fix
Marc Fehling [Wed, 11 May 2022 00:44:44 +0000 (18:44 -0600)]
Merge pull request #13714 from marcfehling/step55-ierr
Fix test simplex/step-55.
Marc Fehling [Thu, 7 Apr 2022 04:40:30 +0000 (22:40 -0600)]
Fix typo.
Marc Fehling [Tue, 10 May 2022 22:29:03 +0000 (16:29 -0600)]
Merge pull request #13715 from singima/changelog_entry
changelog news entry
Marc Fehling [Tue, 10 May 2022 22:24:36 +0000 (16:24 -0600)]
Adjust changelog for 64bit nonzeros.
Marc Fehling [Tue, 10 May 2022 20:33:29 +0000 (14:33 -0600)]
Fix test simplex/step-55.
Marc Fehling [Tue, 10 May 2022 21:58:33 +0000 (15:58 -0600)]
Merge pull request #13711 from drwells/fix-nodal-renumbering-tests
Fix the nodal renumbering tests.
Marc Fehling [Tue, 10 May 2022 21:56:01 +0000 (15:56 -0600)]
Merge pull request #13713 from tamiko/update_cdash_url
Server move: Update server URLs
Sean Ingimarson [Tue, 10 May 2022 21:20:01 +0000 (17:20 -0400)]
changelog news entry
Matthias Maier [Tue, 10 May 2022 19:50:29 +0000 (14:50 -0500)]
examples/step-69: Update URL
Matthias Maier [Tue, 10 May 2022 19:49:24 +0000 (14:49 -0500)]
Server move: Update CDash URL
Corbin Foucart [Fri, 22 Apr 2022 05:56:30 +0000 (01:56 -0400)]
Fixes CMake version > 3.12 python-binding build failure due to deprecated FindPythonInterp call.
Marc Fehling [Tue, 10 May 2022 17:15:15 +0000 (11:15 -0600)]
Restrict permissions for GITHUB_TOKEN.
Peter Munch [Sun, 8 May 2022 15:29:24 +0000 (17:29 +0200)]
Generalize do_interpolate_boundary_values() for pyramid and wedge
David Wells [Tue, 10 May 2022 15:32:25 +0000 (11:32 -0400)]
Merge pull request #13700 from drwells/celldata-default-arg
Correctly size CellData::vertices in GridTools.
David Wells [Tue, 10 May 2022 15:32:02 +0000 (11:32 -0400)]
Merge pull request #13710 from masterleinad/restrict_feinterface_stokes
Restrict feinterface/stokes test
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