https://gitweb.dealii.org/ - dealii-svn.git/log

]> https://gitweb.dealii.org/ - dealii-svn.git/log

bangerth [Thu, 8 Aug 2013 17:31:57 +0000 (17:31 +0000)]

Patch by Oleh Krehel: many typo and other small fixes.

git-svn-id: https://svn.dealii.org/trunk@30258 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Thu, 8 Aug 2013 14:52:38 +0000 (14:52 +0000)]

Fix typos in the glossary.

git-svn-id: https://svn.dealii.org/trunk@30257 0785d39b-7218-0410-832d-ea1e28bc413d

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scott.miller [Thu, 8 Aug 2013 14:09:27 +0000 (14:09 +0000)]

Updates to HDG documentation

git-svn-id: https://svn.dealii.org/trunk@30256 0785d39b-7218-0410-832d-ea1e28bc413d

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scott.miller [Thu, 8 Aug 2013 13:05:04 +0000 (13:05 +0000)]

Merge step-51 botched commit.

git-svn-id: https://svn.dealii.org/trunk@30255 0785d39b-7218-0410-832d-ea1e28bc413d

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scott.miller [Thu, 8 Aug 2013 02:07:07 +0000 (02:07 +0000)]

Add output for step-51

git-svn-id: https://svn.dealii.org/trunk@30254 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 7 Aug 2013 21:06:29 +0000 (21:06 +0000)]

#include cleanup. multigrid.h included <data_out.h> for no apparent reason.

git-svn-id: https://svn.dealii.org/trunk@30253 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 7 Aug 2013 21:01:03 +0000 (21:01 +0000)]

Patch by Oleh Krehel: allow suppressing writing date and time in generating VTK and VTU output.

git-svn-id: https://svn.dealii.org/trunk@30252 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 7 Aug 2013 17:42:54 +0000 (17:42 +0000)]

Add list with convergence rates in 3d

git-svn-id: https://svn.dealii.org/trunk@30251 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 7 Aug 2013 16:36:48 +0000 (16:36 +0000)]

Adjust output: FE_FaceQ now has support points

git-svn-id: https://svn.dealii.org/trunk@30250 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 7 Aug 2013 15:49:45 +0000 (15:49 +0000)]

Tests for face interpolation in FE_FaceQ

git-svn-id: https://svn.dealii.org/trunk@30249 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 7 Aug 2013 15:49:33 +0000 (15:49 +0000)]

Tests for face interpolation in FE_FaceQ

git-svn-id: https://svn.dealii.org/trunk@30248 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 7 Aug 2013 14:21:53 +0000 (14:21 +0000)]

Fix bug

git-svn-id: https://svn.dealii.org/trunk@30247 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 7 Aug 2013 13:13:39 +0000 (13:13 +0000)]

Implement adaptivity. For this, need to add a few functions to FE_FaceQ like face interpolation matrices. Also, change the support points of FE_FaceQ to Gauss-Lobatto points instead of equidistant ones as listed in a todo.

git-svn-id: https://svn.dealii.org/trunk@30246 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 7 Aug 2013 10:03:44 +0000 (10:03 +0000)]

Add missing instantiation.

git-svn-id: https://svn.dealii.org/trunk@30245 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 7 Aug 2013 09:47:47 +0000 (09:47 +0000)]

Fix high memory consumption in ChunkSparsityPattern::copy_from by creating the reduced sparsity pattern using a CompressedSimpleSparsityPattern object for gathering the small indices

git-svn-id: https://svn.dealii.org/trunk@30244 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 7 Aug 2013 09:07:49 +0000 (09:07 +0000)]

Fix a warning

git-svn-id: https://svn.dealii.org/trunk@30243 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 7 Aug 2013 08:45:52 +0000 (08:45 +0000)]

Fix misspelling of HTML code.

git-svn-id: https://svn.dealii.org/trunk@30240 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 7 Aug 2013 07:55:06 +0000 (07:55 +0000)]

Fix typos.

git-svn-id: https://svn.dealii.org/trunk@30239 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 6 Aug 2013 21:44:57 +0000 (21:44 +0000)]

Fix bug #78: BlockMatrixBase::set/add had race conditions when used from multiple threads because these functions used scratch arrays. One just needed to add a mutex to guard these data structures.

git-svn-id: https://svn.dealii.org/trunk@30238 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 6 Aug 2013 17:03:45 +0000 (17:03 +0000)]

Remove namespace step-51 as the class name already contains step-51. Speed up assembly by caching the output of FEValuesExtractors and only working on dofs with support on faces

git-svn-id: https://svn.dealii.org/trunk@30237 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 6 Aug 2013 13:30:49 +0000 (13:30 +0000)]

First version of new tutorial example demonstrating hybridizable discontinuous Galerkin methods on the problem of step-7

git-svn-id: https://svn.dealii.org/trunk@30236 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 5 Aug 2013 22:59:01 +0000 (22:59 +0000)]

Fix copy-paste error.

git-svn-id: https://svn.dealii.org/trunk@30235 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 5 Aug 2013 22:42:38 +0000 (22:42 +0000)]

It looks like block matrices of all type were not freeing memory at exit. Fixed.

git-svn-id: https://svn.dealii.org/trunk@30234 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 5 Aug 2013 22:41:29 +0000 (22:41 +0000)]

add destructor to PETScWrappers::MPI::SparseMatrix to not leak memory

git-svn-id: https://svn.dealii.org/trunk@30233 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 5 Aug 2013 22:14:44 +0000 (22:14 +0000)]

change recommended numdiff export for the regression tests

git-svn-id: https://svn.dealii.org/trunk@30232 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 5 Aug 2013 22:07:43 +0000 (22:07 +0000)]

fix some of the PETSc memory leaks

git-svn-id: https://svn.dealii.org/trunk@30231 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 5 Aug 2013 22:06:14 +0000 (22:06 +0000)]

fix output

git-svn-id: https://svn.dealii.org/trunk@30230 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 5 Aug 2013 22:02:59 +0000 (22:02 +0000)]

simple test to see memory leaks

git-svn-id: https://svn.dealii.org/trunk@30229 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 5 Aug 2013 22:02:32 +0000 (22:02 +0000)]

check for PETSc memory leaks

We are leaking in many tests, actually.

git-svn-id: https://svn.dealii.org/trunk@30228 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 5 Aug 2013 21:40:43 +0000 (21:40 +0000)]

more PETSc reinit() fixes

git-svn-id: https://svn.dealii.org/trunk@30227 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 5 Aug 2013 21:39:38 +0000 (21:39 +0000)]

add failing test

git-svn-id: https://svn.dealii.org/trunk@30226 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 5 Aug 2013 20:57:35 +0000 (20:57 +0000)]

fix another PETSc reinit() call

git-svn-id: https://svn.dealii.org/trunk@30225 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 5 Aug 2013 16:30:45 +0000 (16:30 +0000)]

Fix compilation warning

git-svn-id: https://svn.dealii.org/trunk@30224 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 5 Aug 2013 15:39:45 +0000 (15:39 +0000)]

update properties

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heister [Mon, 5 Aug 2013 15:32:47 +0000 (15:32 +0000)]

add tests

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heister [Mon, 5 Aug 2013 15:29:22 +0000 (15:29 +0000)]

fix assignment and reinit of PETScWrappers::MPI::Vector

git-svn-id: https://svn.dealii.org/trunk@30221 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 5 Aug 2013 10:16:10 +0000 (10:16 +0000)]

CMake: Be quiet

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bangerth [Sat, 3 Aug 2013 21:28:49 +0000 (21:28 +0000)]

Fix bug #76 by removing an assertion that incorrectly triggered. The assertion was also pretty expensive.

git-svn-id: https://svn.dealii.org/trunk@30219 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 2 Aug 2013 16:43:55 +0000 (16:43 +0000)]

documentation patch by Oleh Krehel

git-svn-id: https://svn.dealii.org/trunk@30218 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 1 Aug 2013 23:39:48 +0000 (23:39 +0000)]

Bugfix: Initialize optional languages on subsequent cmake runs, too.

git-svn-id: https://svn.dealii.org/trunk@30216 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 1 Aug 2013 23:03:00 +0000 (23:03 +0000)]

Revert the last 4 commits. git-svn is stupid

git-svn-id: https://svn.dealii.org/trunk@30214 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 1 Aug 2013 23:00:22 +0000 (23:00 +0000)]

Workaround for a problem in LogStream:

It is invalid to test for std::flush or std::endl with function pointers,

std::ostream & (* const p_flush) (std::ostream &) = &std::flush; p ==
p_flush ? ...,

as there could be multiple versions of of it.

And in fact, LLVM's libc++ implements std::flush and std::endl in a way
that every shared library and executable has its local copy.

Fix this by implementing a custom streambuf class that queries this sort of
information.

git-svn-id: https://svn.dealii.org/trunk@30213 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 1 Aug 2013 23:00:21 +0000 (23:00 +0000)]

Fix a compilation warning with clang that complains about class and struct
mismatch in declaration and instantiation

git-svn-id: https://svn.dealii.org/trunk@30212 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 1 Aug 2013 23:00:20 +0000 (23:00 +0000)]

Workaround for a bug in the boost foreign_ptr.hpp header [1]

It is invalid to forward declare things in the std namespace. This works
with libstdc++ by accident but not with libc++ that uses inline namespace
features.

[1] https://svn.boost.org/trac/boost/ticket/6655

git-svn-id: https://svn.dealii.org/trunk@30211 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 1 Aug 2013 23:00:19 +0000 (23:00 +0000)]

Fix a compilation issue with LLVMs libc++

Due to more restrictive include policy template<class T1, class T2> struct pair
is not already defined in std at this point. Unfortunately, a forward
declaration is invalid because it doesn't allow for instantiations:

"error: implicit instantiation of undefined template"

Furthermore, ISO/IEC C++ 2011 Standard, section 17.6.4.2.1 prohibits such
manipulation of the namespace std.

git-svn-id: https://svn.dealii.org/trunk@30210 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 1 Aug 2013 20:56:18 +0000 (20:56 +0000)]

add *::MPI::BlockVector::has_ghost_elements() and a missing constructor

git-svn-id: https://svn.dealii.org/trunk@30209 0785d39b-7218-0410-832d-ea1e28bc413d

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felix.gruber [Thu, 1 Aug 2013 20:46:25 +0000 (20:46 +0000)]

make the documentation of ConstantTensorFunction show up in doxygen

git-svn-id: https://svn.dealii.org/trunk@30208 0785d39b-7218-0410-832d-ea1e28bc413d

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felix.gruber [Thu, 1 Aug 2013 20:44:34 +0000 (20:44 +0000)]

fix typos in documentation of cmake usage

git-svn-id: https://svn.dealii.org/trunk@30207 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 1 Aug 2013 19:46:49 +0000 (19:46 +0000)]

add test with 4 cpus

git-svn-id: https://svn.dealii.org/trunk@30206 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 1 Aug 2013 19:31:36 +0000 (19:31 +0000)]

fix test

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heister [Thu, 1 Aug 2013 18:44:40 +0000 (18:44 +0000)]

fix test

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bangerth [Thu, 1 Aug 2013 15:40:27 +0000 (15:40 +0000)]

Add a reference to a discussion elsewhere.

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maier [Wed, 31 Jul 2013 23:12:23 +0000 (23:12 +0000)]

Remove accidentally checked in test outputs

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heister [Wed, 31 Jul 2013 15:01:48 +0000 (15:01 +0000)]

fix test

git-svn-id: https://svn.dealii.org/trunk@30199 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 31 Jul 2013 15:01:32 +0000 (15:01 +0000)]

fix test

git-svn-id: https://svn.dealii.org/trunk@30198 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 31 Jul 2013 15:01:04 +0000 (15:01 +0000)]

fix SparsityTools::distribute_sparsity_pattern for block systems

git-svn-id: https://svn.dealii.org/trunk@30197 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Wed, 31 Jul 2013 14:31:11 +0000 (14:31 +0000)]

some prm-files

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frohne [Wed, 31 Jul 2013 14:30:00 +0000 (14:30 +0000)]

copied step-42.cc from src/unified

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heister [Wed, 31 Jul 2013 13:41:55 +0000 (13:41 +0000)]

add Oleh to the credits

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heister [Wed, 31 Jul 2013 13:40:09 +0000 (13:40 +0000)]

documentation patch by Oleh Krehel

git-svn-id: https://svn.dealii.org/trunk@30193 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 31 Jul 2013 13:34:45 +0000 (13:34 +0000)]

fix bug in IndexSet

git-svn-id: https://svn.dealii.org/trunk@30192 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Wed, 31 Jul 2013 09:18:29 +0000 (09:18 +0000)]

Checking PETSc-SLEPc compatibility is VERSION_SUBMINOR independent and way to restrictive if not respected. Check MAJOR and MINOR only then go ahead with config.

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young [Wed, 31 Jul 2013 09:03:54 +0000 (09:03 +0000)]

Add a publication (correct a publication)

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heister [Wed, 31 Jul 2013 01:33:58 +0000 (01:33 +0000)]

documentation patch by Oleh Krehel

git-svn-id: https://svn.dealii.org/trunk@30187 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 30 Jul 2013 22:15:50 +0000 (22:15 +0000)]

Add a brief initial sentence.

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bangerth [Tue, 30 Jul 2013 22:15:12 +0000 (22:15 +0000)]

Comment adjustment.

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maier [Tue, 30 Jul 2013 09:22:03 +0000 (09:22 +0000)]

CMake: And guard the last to occurences of a C compiler as well

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maier [Tue, 30 Jul 2013 09:15:30 +0000 (09:15 +0000)]

CMake: *sigh*

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maier [Tue, 30 Jul 2013 08:58:51 +0000 (08:58 +0000)]

CMake: Bugfix, use use supplied cxx flags throughout the configure phase, clean up CMAKE_REQUIRED_* setup and update documentation

git-svn-id: https://svn.dealii.org/trunk@30182 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 30 Jul 2013 03:02:49 +0000 (03:02 +0000)]

add failing test

git-svn-id: https://svn.dealii.org/trunk@30181 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 30 Jul 2013 02:35:34 +0000 (02:35 +0000)]

add test

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heister [Tue, 30 Jul 2013 02:35:22 +0000 (02:35 +0000)]

throw when you create a FE_Q of degree 0 (otherwise we try to allocate a LOT of memory)

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bangerth [Sun, 28 Jul 2013 18:32:53 +0000 (18:32 +0000)]

Clarify that a variable is a number of neighbors, not a has some/has no neighbors boolean.

git-svn-id: https://svn.dealii.org/trunk@30178 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 28 Jul 2013 18:32:49 +0000 (18:32 +0000)]

Fix a typo. Add another half sentence.

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bangerth [Sun, 28 Jul 2013 18:32:44 +0000 (18:32 +0000)]

Align semicolon as usual.

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bangerth [Sat, 27 Jul 2013 15:35:03 +0000 (15:35 +0000)]

Minor adjustments.

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maier [Sat, 27 Jul 2013 12:23:29 +0000 (12:23 +0000)]

CMake: Adjust MPI error message

git-svn-id: https://svn.dealii.org/trunk@30174 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 27 Jul 2013 12:15:16 +0000 (12:15 +0000)]

CMake: Cleanup

git-svn-id: https://svn.dealii.org/trunk@30173 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 27 Jul 2013 12:12:34 +0000 (12:12 +0000)]

CMake: Cleanup and restructure

git-svn-id: https://svn.dealii.org/trunk@30172 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 27 Jul 2013 11:48:15 +0000 (11:48 +0000)]

CMake: Fix typos

git-svn-id: https://svn.dealii.org/trunk@30171 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 27 Jul 2013 11:32:59 +0000 (11:32 +0000)]

CMake: A new header for Make.global_options as well

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maier [Sat, 27 Jul 2013 11:26:39 +0000 (11:26 +0000)]

CMake: Cleanup deal.IIConfig.cmake a bit

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maier [Sat, 27 Jul 2013 11:12:52 +0000 (11:12 +0000)]

Adapt step-18 to the resent changes in DataOut

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bangerth [Sat, 27 Jul 2013 10:51:45 +0000 (10:51 +0000)]

No need for 'typename'.

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bangerth [Fri, 26 Jul 2013 22:58:02 +0000 (22:58 +0000)]

Also instantiate a member template.

git-svn-id: https://svn.dealii.org/trunk@30166 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 26 Jul 2013 20:53:24 +0000 (20:53 +0000)]

Add explicit instantiations.

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bangerth [Fri, 26 Jul 2013 18:23:16 +0000 (18:23 +0000)]

Fix names of header files.

git-svn-id: https://svn.dealii.org/trunk@30164 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 26 Jul 2013 18:20:35 +0000 (18:20 +0000)]

Improve error message.

git-svn-id: https://svn.dealii.org/trunk@30163 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 26 Jul 2013 16:31:42 +0000 (16:31 +0000)]

Fix wrong link (thanks, Jean!).

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frohne [Fri, 26 Jul 2013 15:34:23 +0000 (15:34 +0000)]

Diss of nicole klein 2013

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bangerth [Fri, 26 Jul 2013 13:45:27 +0000 (13:45 +0000)]

Update.

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bangerth [Fri, 26 Jul 2013 11:30:37 +0000 (11:30 +0000)]

Fix comment.

git-svn-id: https://svn.dealii.org/trunk@30159 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Thu, 25 Jul 2013 15:18:48 +0000 (15:18 +0000)]

Fix a bug when using 64bit indices.

git-svn-id: https://svn.dealii.org/trunk@30158 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 25 Jul 2013 13:54:49 +0000 (13:54 +0000)]

Link to download site from news page.

git-svn-id: https://svn.dealii.org/trunk@30157 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 25 Jul 2013 11:57:24 +0000 (11:57 +0000)]

Re-indent function argument list.

git-svn-id: https://svn.dealii.org/trunk@30156 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 25 Jul 2013 11:07:04 +0000 (11:07 +0000)]

Remove instantiation of a non-public function. This shouldn't be necessary since the function is now in an anonymous namespace and is not exported anyway.

git-svn-id: https://svn.dealii.org/trunk@30155 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 25 Jul 2013 10:53:32 +0000 (10:53 +0000)]

Patch by Felix Gruber: Fix all sorts of misspellings and documentation markup fixes.

git-svn-id: https://svn.dealii.org/trunk@30154 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 25 Jul 2013 08:28:41 +0000 (08:28 +0000)]

Reindent parameters in grid_generator.h

git-svn-id: https://svn.dealii.org/trunk@30153 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 24 Jul 2013 18:23:20 +0000 (18:23 +0000)]

Do not execute tutorial programs with mpirun -np 2. It violates the element of least surprise rule.

git-svn-id: https://svn.dealii.org/trunk@30152 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 24 Jul 2013 15:43:22 +0000 (15:43 +0000)]

Make tests work: convert DoFHandler::cell_iterator to DataOut::cell_iterator

git-svn-id: https://svn.dealii.org/trunk@30151 0785d39b-7218-0410-832d-ea1e28bc413d

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