https://gitweb.dealii.org/ - dealii-svn.git/log

kronbichler [Tue, 20 May 2014 18:57:09 +0000 (18:57 +0000)]

Try to calm Intel compiler

git-svn-id: https://svn.dealii.org/trunk@32946 0785d39b-7218-0410-832d-ea1e28bc413d

maier [Tue, 20 May 2014 11:36:11 +0000 (11:36 +0000)]

CTest: Promote simserv04 to the list of official regression testers

git-svn-id: https://svn.dealii.org/trunk@32943 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Tue, 20 May 2014 06:57:14 +0000 (06:57 +0000)]

blank out compatibility warnings in ThetaTimestepping

git-svn-id: https://svn.dealii.org/trunk@32940 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 19 May 2014 14:27:58 +0000 (14:27 +0000)]

Further improve markup.

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bangerth [Mon, 19 May 2014 13:00:52 +0000 (13:00 +0000)]

Patch by Michal Wichrowksi: run compress() also if there is nothing to do for one processor.

git-svn-id: https://svn.dealii.org/trunk@32936 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 19 May 2014 12:28:26 +0000 (12:28 +0000)]

Improve markup a bit. Compress text vertically.

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bangerth [Mon, 19 May 2014 12:23:10 +0000 (12:23 +0000)]

Reclassify this unfinished tutorial program.

git-svn-id: https://svn.dealii.org/trunk@32933 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sun, 18 May 2014 20:45:49 +0000 (20:45 +0000)]

Add functions for pointer access

git-svn-id: https://svn.dealii.org/trunk@32932 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Fri, 16 May 2014 19:04:54 +0000 (19:04 +0000)]

Fix typos in the documentation of step-52.

git-svn-id: https://svn.dealii.org/trunk@32927 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 16 May 2014 12:05:20 +0000 (12:05 +0000)]

CMake: Cosmetic change

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maier [Fri, 16 May 2014 12:02:21 +0000 (12:02 +0000)]

CMake: Bugfix: Detect empty variables...

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kanschat [Fri, 16 May 2014 09:45:42 +0000 (09:45 +0000)]

forgotten inline

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kanschat [Fri, 16 May 2014 09:40:20 +0000 (09:40 +0000)]

conversion from NamedData to AnyData and initialization of NamedSelection with AnyData

git-svn-id: https://svn.dealii.org/trunk@32920 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 16 May 2014 07:49:06 +0000 (07:49 +0000)]

typo in anydata removed and new function try_read tested

git-svn-id: https://svn.dealii.org/trunk@32919 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 16 May 2014 07:26:04 +0000 (07:26 +0000)]

add trial access

git-svn-id: https://svn.dealii.org/trunk@32918 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 16 May 2014 06:13:51 +0000 (06:13 +0000)]

add time and timestep to anydata and fix documentation

git-svn-id: https://svn.dealii.org/trunk@32917 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 16 May 2014 05:53:16 +0000 (05:53 +0000)]

Fix typo

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maier [Thu, 15 May 2014 22:17:20 +0000 (22:17 +0000)]

CMake: Finalize overhaul:

  * Switch Boost as well.

  * Refactor configure/configure_* stuff

  * Update documentation

git-svn-id: https://svn.dealii.org/trunk@32915 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 22:17:17 +0000 (22:17 +0000)]

CMake: Fix spelling

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maier [Thu, 15 May 2014 20:17:23 +0000 (20:17 +0000)]

CMake: Do not forget to checkin updated header

git-svn-id: https://svn.dealii.org/trunk@32913 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 20:06:33 +0000 (20:06 +0000)]

CMake: Port LAPACK as well

git-svn-id: https://svn.dealii.org/trunk@32912 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 20:06:30 +0000 (20:06 +0000)]

CMake: Port MPI, BZIP2 and ZLIB to new find mechanism

git-svn-id: https://svn.dealii.org/trunk@32911 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Thu, 15 May 2014 19:59:33 +0000 (19:59 +0000)]

Change documentation for nonlinear problems

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maier [Thu, 15 May 2014 18:18:46 +0000 (18:18 +0000)]

CMake: Check for MPI compatibility

git-svn-id: https://svn.dealii.org/trunk@32909 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 17:08:01 +0000 (17:08 +0000)]

CMake: and find petsc again ;-)

git-svn-id: https://svn.dealii.org/trunk@32908 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 17:07:18 +0000 (17:07 +0000)]

CMake: Proof of conecpt:

Be a bit more verbose about cached test results and print the FIND_*()
parameter line if a search is unsuccessful

git-svn-id: https://svn.dealii.org/trunk@32907 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 16:14:49 +0000 (16:14 +0000)]

CMake: Cleanup: Well, this is now obsolete

git-svn-id: https://svn.dealii.org/trunk@32906 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 16:14:47 +0000 (16:14 +0000)]

CMake: Remove dump-cache feature.

CMake-2.12* is able to read in a CMakeCache.txt file directly, so remove
this horrible code

git-svn-id: https://svn.dealii.org/trunk@32905 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 16:14:45 +0000 (16:14 +0000)]

CMake: Some sanity, part II:

* Define global suffix lists for all the FOREACH loops over feature and
deal.II variables.

* Sanely purge all variables associated with a feature if the feature gets
disabled

git-svn-id: https://svn.dealii.org/trunk@32904 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 16:14:42 +0000 (16:14 +0000)]

CMake: Some sanity, part I:

Save all cached variables belonging to a feature in a variable
FEATURE_CLEAR_VARIABLES so that we know what cache entry belongs to a
feature.

git-svn-id: https://svn.dealii.org/trunk@32903 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 15 May 2014 12:59:56 +0000 (12:59 +0000)]

Documentation: Clarify the state of DEAL_II_LINKER_FLAGS

git-svn-id: https://svn.dealii.org/trunk@32901 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Tue, 13 May 2014 08:22:23 +0000 (08:22 +0000)]

add missing inline

git-svn-id: https://svn.dealii.org/trunk@32900 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 12 May 2014 19:35:36 +0000 (19:35 +0000)]

Reduce size of matrix with non-real eigenvalues to avoid trouble with roundoff.

git-svn-id: https://svn.dealii.org/trunk@32899 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sun, 11 May 2014 09:57:47 +0000 (09:57 +0000)]

Sort eigenvalues.

git-svn-id: https://svn.dealii.org/trunk@32898 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sun, 11 May 2014 09:44:02 +0000 (09:44 +0000)]

Compute eigenvalues with GMRES

git-svn-id: https://svn.dealii.org/trunk@32897 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 10 May 2014 11:42:58 +0000 (11:42 +0000)]

Another one.

git-svn-id: https://svn.dealii.org/trunk@32896 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 8 May 2014 23:41:57 +0000 (23:41 +0000)]

Patch by Giorgos Kourakos: Make GridIn::read_vtk less rigid.

git-svn-id: https://svn.dealii.org/trunk@32895 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 8 May 2014 23:41:35 +0000 (23:41 +0000)]

Patch by Giorgos Kourakos: Make GridIn::read_vtk less rigid.

git-svn-id: https://svn.dealii.org/trunk@32894 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Thu, 8 May 2014 14:34:52 +0000 (14:34 +0000)]

Fix typo.

git-svn-id: https://svn.dealii.org/trunk@32893 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 7 May 2014 22:01:02 +0000 (22:01 +0000)]

One more.

git-svn-id: https://svn.dealii.org/trunk@32892 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 7 May 2014 17:53:40 +0000 (17:53 +0000)]

Remove obsolete file

git-svn-id: https://svn.dealii.org/trunk@32891 0785d39b-7218-0410-832d-ea1e28bc413d

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heltai [Wed, 7 May 2014 17:17:14 +0000 (17:17 +0000)]

Added QSorted quadrature rule.

git-svn-id: https://svn.dealii.org/trunk@32890 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 5 May 2014 14:53:30 +0000 (14:53 +0000)]

Update test

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kronbichler [Mon, 5 May 2014 08:00:37 +0000 (08:00 +0000)]

Mention change

git-svn-id: https://svn.dealii.org/trunk@32887 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 5 May 2014 07:48:39 +0000 (07:48 +0000)]

Add methods VectorizedArray::load and VectorizedArray store for vectorized read and write of unaligned memory addresses. This also fixes the step-48 test case problems

git-svn-id: https://svn.dealii.org/trunk@32886 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 5 May 2014 03:23:03 +0000 (03:23 +0000)]

Remove SparsityTools::size_type and replace it by the appropriate size_type of the sparsity pattern we use.

git-svn-id: https://svn.dealii.org/trunk@32885 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 5 May 2014 03:03:56 +0000 (03:03 +0000)]

Split output files for 32 and 64 bit mode.

git-svn-id: https://svn.dealii.org/trunk@32884 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 5 May 2014 02:58:09 +0000 (02:58 +0000)]

Add one test.

git-svn-id: https://svn.dealii.org/trunk@32883 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sat, 3 May 2014 10:48:22 +0000 (10:48 +0000)]

Mention change

git-svn-id: https://svn.dealii.org/trunk@32880 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Sat, 3 May 2014 10:48:10 +0000 (10:48 +0000)]

step-6 uses the new way of dealing with constraints, i.e., applying them on the fly, so mention this in step-27 and step-16. In step-16, also avoid using deprecated interfaces to multigrid data structures

git-svn-id: https://svn.dealii.org/trunk@32879 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Fri, 2 May 2014 20:25:11 +0000 (20:25 +0000)]

Start a tutorial using the Runge-Kutta methods implemented in TimeStepping.h

git-svn-id: https://svn.dealii.org/trunk@32878 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 2 May 2014 15:07:52 +0000 (15:07 +0000)]

Re-define one of the iterator typedefs to make it consistent with the
corresponding one in ::DoFHandler.

git-svn-id: https://svn.dealii.org/trunk@32877 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 1 May 2014 03:05:58 +0000 (03:05 +0000)]

Fix a grammar mistake.

git-svn-id: https://svn.dealii.org/trunk@32870 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 1 May 2014 03:05:08 +0000 (03:05 +0000)]

Better document another batch of iterators.

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bangerth [Wed, 30 Apr 2014 15:48:50 +0000 (15:48 +0000)]

Add another reference.

git-svn-id: https://svn.dealii.org/trunk@32868 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 30 Apr 2014 13:41:30 +0000 (13:41 +0000)]

Limit concurrency for non-MPI tests.

git-svn-id: https://svn.dealii.org/trunk@32867 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 30 Apr 2014 12:25:07 +0000 (12:25 +0000)]

Clarify some of the function docs.

git-svn-id: https://svn.dealii.org/trunk@32866 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 30 Apr 2014 12:04:32 +0000 (12:04 +0000)]

Reshuffle and sort the contents of this file.

git-svn-id: https://svn.dealii.org/trunk@32865 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 30 Apr 2014 10:32:53 +0000 (10:32 +0000)]

Improve documentation of a function.

git-svn-id: https://svn.dealii.org/trunk@32864 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 30 Apr 2014 09:15:00 +0000 (09:15 +0000)]

Fix FE_DGQArbitraryNodes::has_support_on_face

git-svn-id: https://svn.dealii.org/trunk@32863 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Tue, 29 Apr 2014 19:43:27 +0000 (19:43 +0000)]

Fix a mistake on the sign in the residual formular for time_stepping.

git-svn-id: https://svn.dealii.org/trunk@32858 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 29 Apr 2014 14:55:24 +0000 (14:55 +0000)]

Initialize ghost elements to zero

git-svn-id: https://svn.dealii.org/trunk@32857 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 29 Apr 2014 03:12:22 +0000 (03:12 +0000)]

Augment documentation.

git-svn-id: https://svn.dealii.org/trunk@32856 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 28 Apr 2014 22:24:34 +0000 (22:24 +0000)]

Be a bit less restrictive

git-svn-id: https://svn.dealii.org/trunk@32855 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 28 Apr 2014 21:49:36 +0000 (21:49 +0000)]

CMake: Limit concurrency of mpi tests

git-svn-id: https://svn.dealii.org/trunk@32854 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 28 Apr 2014 19:53:24 +0000 (19:53 +0000)]

Cleanup file fe_trace.cc

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bangerth [Mon, 28 Apr 2014 01:53:52 +0000 (01:53 +0000)]

Make two member variables private. Improve documentation of the enums that are used for these variables. Further improve documentation in a couple of places.

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bangerth [Mon, 28 Apr 2014 01:27:14 +0000 (01:27 +0000)]

Another one.

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bangerth [Sun, 27 Apr 2014 16:15:34 +0000 (16:15 +0000)]

Clarify and correct documentation.

git-svn-id: https://svn.dealii.org/trunk@32849 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 26 Apr 2014 17:30:00 +0000 (17:30 +0000)]

CMake: Provide our own PACKAGE_HANDLE_STANDARD_ARGS

git-svn-id: https://svn.dealii.org/trunk@32845 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 26 Apr 2014 13:31:38 +0000 (13:31 +0000)]

CMake: Refactor Find modules

git-svn-id: https://svn.dealii.org/trunk@32844 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 26 Apr 2014 12:28:38 +0000 (12:28 +0000)]

CMake: Some minor cleanup

git-svn-id: https://svn.dealii.org/trunk@32843 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 26 Apr 2014 12:05:00 +0000 (12:05 +0000)]

More minor editorial adjustments.

git-svn-id: https://svn.dealii.org/trunk@32842 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 26 Apr 2014 11:56:51 +0000 (11:56 +0000)]

Fix a test

git-svn-id: https://svn.dealii.org/trunk@32841 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 26 Apr 2014 11:53:22 +0000 (11:53 +0000)]

Minor text edits.

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maier [Sat, 26 Apr 2014 00:38:26 +0000 (00:38 +0000)]

Add a boolean autopartition to
parallel::distributed::Triangulation<...>::load to control automatic
reparitioning behaviour of p4est

git-svn-id: https://svn.dealii.org/trunk@32839 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 25 Apr 2014 19:03:08 +0000 (19:03 +0000)]

Complete search for now.

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heister [Fri, 25 Apr 2014 14:09:15 +0000 (14:09 +0000)]

tweak to test script status message that confused me

git-svn-id: https://svn.dealii.org/trunk@32829 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 25 Apr 2014 14:01:05 +0000 (14:01 +0000)]

Start work on bug 198 (https://code.google.com/p/dealii/issues/detail?id=198) documenting the exact types we have for iterator typedefs.

git-svn-id: https://svn.dealii.org/trunk@32828 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 25 Apr 2014 13:18:15 +0000 (13:18 +0000)]

Augment the documentation in a couple of places.

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maier [Fri, 25 Apr 2014 10:03:16 +0000 (10:03 +0000)]

Testsuite: Fix a buffer overflow that makes clang unhappy in debug mode

git-svn-id: https://svn.dealii.org/trunk@32826 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 25 Apr 2014 03:19:55 +0000 (03:19 +0000)]

Augment documentation somewhat.

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bangerth [Thu, 24 Apr 2014 21:41:43 +0000 (21:41 +0000)]

Several more.

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bangerth [Thu, 24 Apr 2014 16:04:32 +0000 (16:04 +0000)]

One update.

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bangerth [Wed, 23 Apr 2014 22:44:59 +0000 (22:44 +0000)]

Adjust the include guard to the name of the file.

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bangerth [Wed, 23 Apr 2014 21:42:28 +0000 (21:42 +0000)]

Add one.

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bangerth [Wed, 23 Apr 2014 20:16:14 +0000 (20:16 +0000)]

Expand on a TODO.

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bangerth [Wed, 23 Apr 2014 15:40:17 +0000 (15:40 +0000)]

Also update the 64-bit output.

git-svn-id: https://svn.dealii.org/trunk@32819 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 23 Apr 2014 14:36:45 +0000 (14:36 +0000)]

Initial test to detect optimization bug for gcc-4.6

git-svn-id: https://svn.dealii.org/trunk@32818 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 23 Apr 2014 14:10:42 +0000 (14:10 +0000)]

Fix step-48 on tester by computing the value as in step-48b (with an unnecessary second computation for std::sin). This shows that we indeed look at a compiler bug.

git-svn-id: https://svn.dealii.org/trunk@32817 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 23 Apr 2014 12:59:22 +0000 (12:59 +0000)]

CMake: Ensure that DIFF_EXECUTABLE is always valid

git-svn-id: https://svn.dealii.org/trunk@32816 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 23 Apr 2014 12:11:32 +0000 (12:11 +0000)]

Output only the first few lines of numdiff output if a test fails. Then output
the first 50 lines of regular diff since it's so much more readable.

git-svn-id: https://svn.dealii.org/trunk@32815 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 23 Apr 2014 11:20:01 +0000 (11:20 +0000)]

Revert "CMake: Silence warning w654 with icc: "overloaded virtual function is only partially overriden" - I assume this is intended..."

No not intended and we schould fix it..

git-svn-id: https://svn.dealii.org/trunk@32814 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 23 Apr 2014 09:07:23 +0000 (09:07 +0000)]

Testsuite: Lazily fix a failing test for clang

git-svn-id: https://svn.dealii.org/trunk@32813 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 23 Apr 2014 08:18:10 +0000 (08:18 +0000)]

CMake: Silence warning w654 with icc: "overloaded virtual function is only partially overriden" - I assume this is intended...

git-svn-id: https://svn.dealii.org/trunk@32812 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 23 Apr 2014 08:18:07 +0000 (08:18 +0000)]

CMake: Hide a warning with clang: -Wno-unsupported-friend

git-svn-id: https://svn.dealii.org/trunk@32811 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 22 Apr 2014 18:57:07 +0000 (18:57 +0000)]

Testsuite: Fix one more test

git-svn-id: https://svn.dealii.org/trunk@32810 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 22 Apr 2014 18:34:58 +0000 (18:34 +0000)]

Testsuite: Bugfix: Make solver_02 happy again

git-svn-id: https://svn.dealii.org/trunk@32809 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 22 Apr 2014 15:34:14 +0000 (15:34 +0000)]

Testsuite: Remove old comparison files for gcc 4.1.2, try to make some tests more platform independent

git-svn-id: https://svn.dealii.org/trunk@32808 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 22 Apr 2014 14:22:41 +0000 (14:22 +0000)]

CMake: Bugfixes:
Use DEAL_II_CXX_FLAGS for the top level library target
Set the linker language to cxx

git-svn-id: https://svn.dealii.org/trunk@32805 0785d39b-7218-0410-832d-ea1e28bc413d

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