]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
3 years agoMerge pull request #12170 from drwells/hdf5
David Wells [Tue, 11 May 2021 16:25:39 +0000 (12:25 -0400)]
Merge pull request #12170 from drwells/hdf5

Fix compilation with HDF5

3 years agoMerge pull request #12174 from peterrum/fe_rename
David Wells [Tue, 11 May 2021 15:51:47 +0000 (11:51 -0400)]
Merge pull request #12174 from peterrum/fe_rename

Rename FE_Wedge and FE_Pyramid

3 years agoMerge pull request #12173 from drwells/deprecate-threadgroup
Daniel Arndt [Tue, 11 May 2021 14:28:46 +0000 (10:28 -0400)]
Merge pull request #12173 from drwells/deprecate-threadgroup

Deprecate Thread and ThreadGroup.

3 years agoFix compilation with HDF5 12170/head
David Wells [Mon, 10 May 2021 15:37:12 +0000 (11:37 -0400)]
Fix compilation with HDF5

3 years agoMerge pull request #12178 from peterrum/MappingQCache_level
Martin Kronbichler [Tue, 11 May 2021 12:19:41 +0000 (14:19 +0200)]
Merge pull request #12178 from peterrum/MappingQCache_level

MappingQCache: assert that level information was set up

3 years agoMerge pull request #12162 from peterrum/kinsol_ladv
Martin Kronbichler [Tue, 11 May 2021 09:33:00 +0000 (11:33 +0200)]
Merge pull request #12162 from peterrum/kinsol_ladv

Enable SUNDIALS::KINSOL for LinearAlgebra::distributed::Vector

3 years agoMerge pull request #12175 from peterrum/remove_names
Martin Kronbichler [Tue, 11 May 2021 09:32:21 +0000 (11:32 +0200)]
Merge pull request #12175 from peterrum/remove_names

Remove some names

3 years agoMappingQCache: assert that level information was set up 12178/head
Peter Munch [Tue, 11 May 2021 07:40:06 +0000 (09:40 +0200)]
MappingQCache: assert that level information was set up

3 years agoRemove some names 12175/head
Peter Munch [Tue, 11 May 2021 05:10:21 +0000 (07:10 +0200)]
Remove some names

3 years agoEnable SUNDIALS::KINSOL for LinearAlgebra::distributed::Vector 12162/head
Peter Munch [Mon, 10 May 2021 08:46:53 +0000 (10:46 +0200)]
Enable SUNDIALS::KINSOL for LinearAlgebra::distributed::Vector

3 years agoRename FE_Wedge and FE_Pyramid 12174/head
Peter Munch [Tue, 11 May 2021 04:37:38 +0000 (06:37 +0200)]
Rename FE_Wedge and FE_Pyramid

3 years agoMerge pull request #12140 from drwells/fix-intel-17-1
David Wells [Tue, 11 May 2021 02:49:01 +0000 (22:49 -0400)]
Merge pull request #12140 from drwells/fix-intel-17-1

Fix compilation with intel 17, part 1

3 years agoMerge pull request #12172 from masterleinad/fix_step-71
Bruno Turcksin [Tue, 11 May 2021 00:44:19 +0000 (20:44 -0400)]
Merge pull request #12172 from masterleinad/fix_step-71

Address warnings about extra ';' in step-71

3 years agoMerge pull request #12171 from tamiko/fix_test_02
Bruno Turcksin [Tue, 11 May 2021 00:43:53 +0000 (20:43 -0400)]
Merge pull request #12171 from tamiko/fix_test_02

mpi/data_out_hdf5_02: fix hdf5 output for dimensions 0 and 1

3 years agoDeprecate Thread and ThreadGroup. 12173/head
David Wells [Mon, 10 May 2021 18:12:00 +0000 (14:12 -0400)]
Deprecate Thread and ThreadGroup.

We should be using higher-level threading constructs, and these aren't used
anywhere right now anyway.

3 years agoMerge pull request #12163 from peterrum/step77_typename
Martin Kronbichler [Mon, 10 May 2021 18:21:00 +0000 (20:21 +0200)]
Merge pull request #12163 from peterrum/step77_typename

Step 77: add typename

3 years agoMerge pull request #12169 from peterrum/fe_point_evaluation_zero
Martin Kronbichler [Mon, 10 May 2021 17:55:00 +0000 (19:55 +0200)]
Merge pull request #12169 from peterrum/fe_point_evaluation_zero

FEPointEvaluation: check if evaluation points are provided

3 years agoMerge pull request #12165 from peterrum/generators_13
Martin Kronbichler [Mon, 10 May 2021 17:54:04 +0000 (19:54 +0200)]
Merge pull request #12165 from peterrum/generators_13

Update output of particles/generators_13

3 years agoMerge pull request #12168 from peterrum/step-40-simplex-robust
Martin Kronbichler [Mon, 10 May 2021 17:53:51 +0000 (19:53 +0200)]
Merge pull request #12168 from peterrum/step-40-simplex-robust

Make output of tests/simplex/step-40 more robust

3 years agoAddress warnings about extra ';' in step-71 12172/head
Daniel Arndt [Mon, 10 May 2021 17:35:45 +0000 (13:35 -0400)]
Address warnings about extra ';' in step-71

3 years agofix hdf5 output for dimension 0 and 1 12171/head
Matthias Maier [Mon, 10 May 2021 16:25:03 +0000 (11:25 -0500)]
fix hdf5 output for dimension 0 and 1

3 years agoMerge pull request #12161 from drwells/sparsity-pattern-exc
Matthias Maier [Mon, 10 May 2021 15:28:11 +0000 (10:28 -0500)]
Merge pull request #12161 from drwells/sparsity-pattern-exc

Use a better exception for handling missing sparsity patterns.

3 years agoMerge pull request #12167 from peterrum/step-16-50-mpi-linear-operator
David Wells [Mon, 10 May 2021 14:51:53 +0000 (10:51 -0400)]
Merge pull request #12167 from peterrum/step-16-50-mpi-linear-operator

Fix PreconditionMG::get_mpi_communicator()

3 years agoMerge pull request #12166 from peterrum/build_global_description_tree
David Wells [Mon, 10 May 2021 14:46:15 +0000 (10:46 -0400)]
Merge pull request #12166 from peterrum/build_global_description_tree

Fix grid/build_global_description_tree

3 years agoFEPointEvaluation: check if evaluation points are provided 12169/head
Peter Munch [Mon, 10 May 2021 14:44:03 +0000 (16:44 +0200)]
FEPointEvaluation: check if evaluation points are provided

3 years agoMake output of tests/simplex/step-40 more robust 12168/head
Peter Munch [Mon, 10 May 2021 12:44:44 +0000 (14:44 +0200)]
Make output of tests/simplex/step-40 more robust

3 years agoMerge pull request #12164 from peterrum/pex_cite
Martin Kronbichler [Mon, 10 May 2021 11:39:36 +0000 (13:39 +0200)]
Merge pull request #12164 from peterrum/pex_cite

Fix cite for PEX

3 years agoFix PreconditionMG::get_mpi_communicator() 12167/head
Peter Munch [Mon, 10 May 2021 11:24:13 +0000 (13:24 +0200)]
Fix PreconditionMG::get_mpi_communicator()

3 years agoFix grid/build_global_description_tree 12166/head
Peter Munch [Mon, 10 May 2021 10:57:31 +0000 (12:57 +0200)]
Fix grid/build_global_description_tree

3 years agoUpdate output of particles/generators_13 12165/head
Peter Munch [Mon, 10 May 2021 10:46:20 +0000 (12:46 +0200)]
Update output of particles/generators_13

3 years agoFix cite for PEX 12164/head
Peter Munch [Mon, 10 May 2021 09:38:37 +0000 (11:38 +0200)]
Fix cite for PEX

3 years agoStep 77: add typename 12163/head
Peter Munch [Mon, 10 May 2021 09:29:01 +0000 (11:29 +0200)]
Step 77: add typename

3 years agoMerge pull request #11828 from peterrum/marching_cube
Bruno Turcksin [Mon, 10 May 2021 01:36:01 +0000 (21:36 -0400)]
Merge pull request #11828 from peterrum/marching_cube

Add GridGenerator::MarchingCubeAlgorithm

3 years agoUse a better exception for handling missing sparsity patterns. 12161/head
David Wells [Sun, 9 May 2021 19:43:38 +0000 (15:43 -0400)]
Use a better exception for handling missing sparsity patterns.

3 years agoMerge pull request #12159 from peterrum/update-copyright-2021
Martin Kronbichler [Sun, 9 May 2021 06:07:52 +0000 (08:07 +0200)]
Merge pull request #12159 from peterrum/update-copyright-2021

Update copyright years

3 years agoMerge pull request #12157 from kronbichler/fix_empty_proc
David Wells [Sat, 8 May 2021 16:30:54 +0000 (12:30 -0400)]
Merge pull request #12157 from kronbichler/fix_empty_proc

p:f:Tria: Fix bug when a process does not own cells on a level

3 years agoUpdate copyright years 12159/head
Peter Munch [Sat, 8 May 2021 15:12:47 +0000 (17:12 +0200)]
Update copyright years

3 years agoMerge pull request #12158 from jppelteret/step-71-fixes_02
Martin Kronbichler [Sat, 8 May 2021 14:38:17 +0000 (16:38 +0200)]
Merge pull request #12158 from jppelteret/step-71-fixes_02

More doc fixes for step-71

3 years agoAdd test case 12157/head
Martin Kronbichler [Sat, 8 May 2021 10:19:28 +0000 (12:19 +0200)]
Add test case

3 years agop:f:Tria: Fix bug when a process does not own cells on a level
Martin Kronbichler [Fri, 7 May 2021 21:18:25 +0000 (23:18 +0200)]
p:f:Tria: Fix bug when a process does not own cells on a level

3 years agoAdd GridGenerator::MarchingCubeAlgorithm 11828/head
Peter Munch [Sun, 28 Feb 2021 18:30:51 +0000 (19:30 +0100)]
Add GridGenerator::MarchingCubeAlgorithm

3 years agoMore doc fixes for step-71 12158/head
Jean-Paul Pelteret [Sat, 8 May 2021 06:09:14 +0000 (08:09 +0200)]
More doc fixes for step-71

3 years agoMerge pull request #12156 from drwells/undeprecate-petsc-vector-set
David Wells [Fri, 7 May 2021 19:49:09 +0000 (15:49 -0400)]
Merge pull request #12156 from drwells/undeprecate-petsc-vector-set

Un-deprecate PETScWrappers::VectorBase::set.

3 years agoMerge pull request #12154 from marcfehling/internal
David Wells [Fri, 7 May 2021 17:24:32 +0000 (13:24 -0400)]
Merge pull request #12154 from marcfehling/internal

Move `TemporarilyMatchRefineFlags` out of `internal` namespace.

3 years agoUn-deprecate PETScWrappers::VectorBase::set. 12156/head
David Wells [Fri, 7 May 2021 14:39:07 +0000 (10:39 -0400)]
Un-deprecate PETScWrappers::VectorBase::set.

We didn't implement import so there is no reason to deprecate this function yet.

Partially reverts 20a81f91beae2d022acebc833c1bca2321c67155.

3 years agoMove `TemporarilyMatchRefineFlags` out of `internal` namespace. 12154/head
Marc Fehling [Thu, 6 May 2021 21:35:23 +0000 (15:35 -0600)]
Move `TemporarilyMatchRefineFlags` out of `internal` namespace.

3 years agoMerge pull request #10393 from jppelteret/step-72
Wolfgang Bangerth [Thu, 6 May 2021 18:37:45 +0000 (12:37 -0600)]
Merge pull request #10393 from jppelteret/step-72

Step-72: The minimal surface equation using automatic differentiation (step-15 revisited)

3 years agoMerge pull request #12153 from jppelteret/step-71-fixes_01
Martin Kronbichler [Thu, 6 May 2021 17:38:49 +0000 (19:38 +0200)]
Merge pull request #12153 from jppelteret/step-71-fixes_01

Fix some typos in doc for step-71

3 years agoMerge pull request #12152 from bangerth/tests
Martin Kronbichler [Thu, 6 May 2021 17:37:41 +0000 (19:37 +0200)]
Merge pull request #12152 from bangerth/tests

Add the correct test.

3 years agoFix compilation with intel 17 (and a UCD bug). 12140/head
David Wells [Tue, 4 May 2021 21:10:27 +0000 (17:10 -0400)]
Fix compilation with intel 17 (and a UCD bug).

In particular, the new function set_node_numbers sets up the internal node
numbers for patches in the deal.II numbering, not UCD or DX or anything else.
However, the code

    nodes[GeometryInfo<dim>::ucd_to_deal[0]] = start;

assumes the RHS values are numbered with UCD (e.g., that start is the global
index for local UCD vertex number 0), which is not correct. Hence: fixing this
bug corrected the UCD output for many tests.

3 years agoAdd step-72 10393/head
Jean-Paul Pelteret [Wed, 27 May 2020 19:47:50 +0000 (21:47 +0200)]
Add step-72

3 years agoFix some typos in doc for step-71 12153/head
Jean-Paul Pelteret [Thu, 6 May 2021 16:07:37 +0000 (18:07 +0200)]
Fix some typos in doc for step-71

3 years agoMerge pull request #12015 from simonsticko/restrictions
Daniel Arndt [Thu, 6 May 2021 14:21:13 +0000 (10:21 -0400)]
Merge pull request #12015 from simonsticko/restrictions

Add classes restricting a function to a lower dimension

3 years agoAdd the correct test. 12152/head
Wolfgang Bangerth [Thu, 6 May 2021 13:51:39 +0000 (07:51 -0600)]
Add the correct test.

3 years agoMerge pull request #10392 from jppelteret/step-71
Wolfgang Bangerth [Thu, 6 May 2021 13:37:05 +0000 (07:37 -0600)]
Merge pull request #10392 from jppelteret/step-71

Step-71: Introduction to automatic and symbolic differentiation

3 years agoMerge pull request #12151 from peterrum/reference_cell_switch
David Wells [Thu, 6 May 2021 13:33:19 +0000 (09:33 -0400)]
Merge pull request #12151 from peterrum/reference_cell_switch

Switch order of parameters in GridGenerator::reference_cell()

3 years agoMerge pull request #12150 from peterrum/typo_ca
Martin Kronbichler [Thu, 6 May 2021 12:18:03 +0000 (14:18 +0200)]
Merge pull request #12150 from peterrum/typo_ca

Fix typo

3 years agoSwitch order of parameters in GridGenerator::reference_cell() 12151/head
Peter Munch [Thu, 6 May 2021 10:32:53 +0000 (12:32 +0200)]
Switch order of parameters in GridGenerator::reference_cell()

3 years agoFix typo 12150/head
Peter Munch [Thu, 6 May 2021 10:15:22 +0000 (12:15 +0200)]
Fix typo

3 years agoMerge pull request #12128 from peterrum/feeval_print
Martin Kronbichler [Thu, 6 May 2021 06:56:39 +0000 (08:56 +0200)]
Merge pull request #12128 from peterrum/feeval_print

Add FEEvaluation::fast_evaluation_supported()

3 years agoMerge pull request #12148 from masterleinad/fix_aligned_vector_replicate_03_release
Martin Kronbichler [Thu, 6 May 2021 06:16:33 +0000 (08:16 +0200)]
Merge pull request #12148 from masterleinad/fix_aligned_vector_replicate_03_release

Fix base/aligned_vector_replicate_03.mpirun=3.release

3 years agoMove barrier between step-6 and step-7 12148/head
Daniel Arndt [Wed, 5 May 2021 23:06:14 +0000 (19:06 -0400)]
Move barrier between step-6 and step-7

3 years agoMerge pull request #12146 from masterleinad/fix_twisted_parallelepiped
Daniel Arndt [Wed, 5 May 2021 21:00:46 +0000 (17:00 -0400)]
Merge pull request #12146 from masterleinad/fix_twisted_parallelepiped

Fix grid/twisted_parallelepiped

3 years agoFix base/aligned_vector_replicate_03.mpirun=3.release
Daniel Arndt [Wed, 5 May 2021 19:37:20 +0000 (15:37 -0400)]
Fix base/aligned_vector_replicate_03.mpirun=3.release

3 years agoAdd step-71 10392/head
Jean-Paul Pelteret [Wed, 27 May 2020 19:47:04 +0000 (21:47 +0200)]
Add step-71

3 years agoMerge pull request #12147 from gassmoeller/fix_probabilistic_particle_generation_empty
David Wells [Wed, 5 May 2021 20:02:51 +0000 (16:02 -0400)]
Merge pull request #12147 from gassmoeller/fix_probabilistic_particle_generation_empty

Fix for particles in empty local triangulations

3 years agoMerge pull request #12131 from bangerth/private
Martin Kronbichler [Wed, 5 May 2021 19:38:17 +0000 (21:38 +0200)]
Merge pull request #12131 from bangerth/private

Mark members in ParticleAccessor as 'private'.

3 years agoMerge pull request #12137 from masterleinad/fix_warnings_interface_values
Daniel Arndt [Wed, 5 May 2021 18:44:10 +0000 (14:44 -0400)]
Merge pull request #12137 from masterleinad/fix_warnings_interface_values

Fix unused variable warning in fe_interface_values.h

3 years agoMerge pull request #12145 from bangerth/nedelec-2
Daniel Arndt [Wed, 5 May 2021 18:31:12 +0000 (14:31 -0400)]
Merge pull request #12145 from bangerth/nedelec-2

Small cleanups.

3 years agoMerge pull request #12144 from bangerth/nedelec-1
Daniel Arndt [Wed, 5 May 2021 18:12:03 +0000 (14:12 -0400)]
Merge pull request #12144 from bangerth/nedelec-1

3 years agoFix for particles in empty local triangulations 12147/head
Rene Gassmoeller [Wed, 5 May 2021 16:13:20 +0000 (12:13 -0400)]
Fix for particles in empty local triangulations

3 years agoFix grid/twisted_parallelepiped 12146/head
Daniel Arndt [Wed, 5 May 2021 16:16:54 +0000 (12:16 -0400)]
Fix grid/twisted_parallelepiped

3 years agoSmall cleanups. 12145/head
Wolfgang Bangerth [Wed, 5 May 2021 15:59:15 +0000 (09:59 -0600)]
Small cleanups.

3 years agoAdd a test. 12144/head
Wolfgang Bangerth [Wed, 5 May 2021 15:58:46 +0000 (09:58 -0600)]
Add a test.

3 years agoAdd an assertion.
Wolfgang Bangerth [Wed, 5 May 2021 15:50:54 +0000 (09:50 -0600)]
Add an assertion.

3 years agoMerge pull request #11953 from bangerth/step-76
Daniel Arndt [Wed, 5 May 2021 03:24:55 +0000 (23:24 -0400)]
Merge pull request #11953 from bangerth/step-76

3 years agoMerge pull request #12111 from bangerth/table-y
Daniel Arndt [Tue, 4 May 2021 22:27:17 +0000 (18:27 -0400)]
Merge pull request #12111 from bangerth/table-y

3 years agoMerge pull request #12139 from masterleinad/fix_simplex_test
Wolfgang Bangerth [Tue, 4 May 2021 21:44:25 +0000 (15:44 -0600)]
Merge pull request #12139 from masterleinad/fix_simplex_test

Restrict simplex/step-17 to only run with PETSc support

3 years agoLeave references to step-77. 11953/head
Wolfgang Bangerth [Mon, 3 May 2021 23:51:49 +0000 (17:51 -0600)]
Leave references to step-77.

3 years agoHook step-77 into the documentation.
Wolfgang Bangerth [Mon, 3 May 2021 23:51:38 +0000 (17:51 -0600)]
Hook step-77 into the documentation.

3 years agoAdd the actual code of step-77.
Wolfgang Bangerth [Mon, 3 May 2021 23:56:43 +0000 (17:56 -0600)]
Add the actual code of step-77.

3 years agoAdd the documentation for step-77.
Wolfgang Bangerth [Mon, 3 May 2021 23:51:00 +0000 (17:51 -0600)]
Add the documentation for step-77.

3 years agoAdd the frame of step-77.
Wolfgang Bangerth [Mon, 3 May 2021 23:50:31 +0000 (17:50 -0600)]
Add the frame of step-77.

3 years agoMerge pull request #12138 from peterrum/n_locally_owned_particles
Daniel Arndt [Tue, 4 May 2021 20:30:53 +0000 (16:30 -0400)]
Merge pull request #12138 from peterrum/n_locally_owned_particles

n_locally_owned_particle_ids() -> n_locally_owned_particles()

3 years agoAdd FEEvaluation::fast_evaluation_supported() 12128/head
Peter Munch [Mon, 3 May 2021 19:17:24 +0000 (21:17 +0200)]
Add FEEvaluation::fast_evaluation_supported()

3 years agoRestrict simplex/step-17 to only run with PETSc support 12139/head
Daniel Arndt [Tue, 4 May 2021 19:25:50 +0000 (15:25 -0400)]
Restrict simplex/step-17 to only run with PETSc support

3 years agoMerge pull request #11158 from peterrum/step-67b
David Wells [Tue, 4 May 2021 18:55:01 +0000 (14:55 -0400)]
Merge pull request #11158 from peterrum/step-67b

Add step-76

3 years ago"n_locally_owned_particle_ids() -> n_locally_owned_particles() 12138/head
Peter Munch [Tue, 4 May 2021 18:51:11 +0000 (20:51 +0200)]
"n_locally_owned_particle_ids() -> n_locally_owned_particles()

3 years agoFix unused variable warning in fe_interface_values.h 12137/head
Daniel Arndt [Tue, 4 May 2021 17:19:23 +0000 (13:19 -0400)]
Fix unused variable warning in fe_interface_values.h

3 years agoMerge pull request #12136 from masterleinad/improve_pdt_without_p4est
Wolfgang Bangerth [Tue, 4 May 2021 16:58:09 +0000 (10:58 -0600)]
Merge pull request #12136 from masterleinad/improve_pdt_without_p4est

Give reasonable error messages when trying to use p::d::Triangulation without p4est

3 years agoMerge pull request #12130 from bangerth/formula
Daniel Arndt [Tue, 4 May 2021 15:46:56 +0000 (11:46 -0400)]
Merge pull request #12130 from bangerth/formula

Fix markup for a formula.

3 years agoMerge pull request #12133 from kronbichler/speedup_vertex_index
Wolfgang Bangerth [Tue, 4 May 2021 14:44:02 +0000 (08:44 -0600)]
Merge pull request #12133 from kronbichler/speedup_vertex_index

Implement cache to speed up TriaAccessor::vertex_index()

3 years agoComment unused arguments 12136/head
Daniel Arndt [Tue, 4 May 2021 14:19:01 +0000 (10:19 -0400)]
Comment unused arguments

3 years agoMerge pull request #12134 from kronbichler/fix_test
Wolfgang Bangerth [Tue, 4 May 2021 13:58:30 +0000 (07:58 -0600)]
Merge pull request #12134 from kronbichler/fix_test

MG test: Remove update_cell_dof_indices_cache for mg dof numbers

3 years agoMerge pull request #12135 from kronbichler/tria_simplify_code
Wolfgang Bangerth [Tue, 4 May 2021 13:55:02 +0000 (07:55 -0600)]
Merge pull request #12135 from kronbichler/tria_simplify_code

Simplify some code in TriangulationImplementation

3 years agoFix markup for a formula. 12130/head
Wolfgang Bangerth [Tue, 4 May 2021 00:04:34 +0000 (18:04 -0600)]
Fix markup for a formula.

3 years agoGive reasonable error messages when trying to use p::d::Triangulation without p4est
Daniel Arndt [Tue, 4 May 2021 13:26:19 +0000 (09:26 -0400)]
Give reasonable error messages when trying to use p::d::Triangulation without p4est

3 years agoSimplify some code in Triangulation 12135/head
Martin Kronbichler [Tue, 4 May 2021 11:44:07 +0000 (13:44 +0200)]
Simplify some code in Triangulation

3 years agoRemove update_cell_dof_indices_cache for mg dof numbers 12134/head
Martin Kronbichler [Tue, 4 May 2021 10:16:14 +0000 (12:16 +0200)]
Remove update_cell_dof_indices_cache for mg dof numbers

3 years agoChangelog 12133/head
Martin Kronbichler [Tue, 4 May 2021 09:47:18 +0000 (11:47 +0200)]
Changelog


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