]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
7 years agoRestrict tests requiring a parallel PETSc 4165/head
Daniel Arndt [Fri, 31 Mar 2017 14:03:36 +0000 (16:03 +0200)]
Restrict tests requiring a parallel PETSc

7 years agoMerge pull request #4156 from tjhei/cmake_find_mpi_version
Daniel Arndt [Fri, 31 Mar 2017 09:30:37 +0000 (11:30 +0200)]
Merge pull request #4156 from tjhei/cmake_find_mpi_version

fix cmake regex for finding MPI version

7 years agoMerge pull request #4163 from davydden/changelog_matrixfree
Denis Davydov [Fri, 31 Mar 2017 09:12:55 +0000 (11:12 +0200)]
Merge pull request #4163 from davydden/changelog_matrixfree

a changelog for deprecated mpi_communicator in MatrixFree::Additional…

7 years agoa changelog for deprecated mpi_communicator in MatrixFree::AdditionalData 4163/head
Denis Davydov [Fri, 31 Mar 2017 08:24:39 +0000 (10:24 +0200)]
a changelog for deprecated mpi_communicator in MatrixFree::AdditionalData

7 years agoMerge pull request #4160 from tamiko/fix_step_dependency
David Wells [Fri, 31 Mar 2017 03:40:00 +0000 (23:40 -0400)]
Merge pull request #4160 from tamiko/fix_step_dependency

Examples: Require MPI for step-18

7 years agoMerge pull request #4152 from tjhei/fix_step_44_petsc
Matthias Maier [Thu, 30 Mar 2017 23:27:51 +0000 (18:27 -0500)]
Merge pull request #4152 from tjhei/fix_step_44_petsc

fix step-55

7 years agoExamples: Require MPI for step-18 4160/head
Matthias Maier [Thu, 30 Mar 2017 23:23:02 +0000 (18:23 -0500)]
Examples: Require MPI for step-18

7 years agofix cmake regex for finding MPI version 4156/head
Timo Heister [Thu, 30 Mar 2017 21:37:53 +0000 (17:37 -0400)]
fix cmake regex for finding MPI version

cmake regex is greedy, which means that the old regex
MPI_VERSION.*([0-9]+)
would only put the last digit of the version into the group \1 because
.* consumes the others. Fix this.

7 years agoMerge pull request #4143 from tjhei/test_prm_map
Daniel Arndt [Thu, 30 Mar 2017 20:44:26 +0000 (22:44 +0200)]
Merge pull request #4143 from tjhei/test_prm_map

add test for parsing Map pattern in ParameterHandler

7 years agofix step-55 4152/head
Timo Heister [Thu, 30 Mar 2017 19:09:45 +0000 (15:09 -0400)]
fix step-55

This causes crashes with PETSc and solver convergence issues with
Trilinos with more than one rank.

7 years agoMerge pull request #4149 from tamiko/require_cmake_2.8.12
Matthias Maier [Thu, 30 Mar 2017 17:19:39 +0000 (12:19 -0500)]
Merge pull request #4149 from tamiko/require_cmake_2.8.12

CMake: Raise minimal required version to 2.8.12

7 years agoCMake: Raise minimal required version to 2.8.12 4149/head
Matthias Maier [Thu, 30 Mar 2017 16:56:07 +0000 (11:56 -0500)]
CMake: Raise minimal required version to 2.8.12

Almost all distributions with a recent enough compiler come with at
least CMake 2.8.12 which was released November 2013. Let's simply
require this version.

7 years agoadd test for parsing Map pattern in ParameterHandler 4143/head
Timo Heister [Thu, 30 Mar 2017 13:53:45 +0000 (09:53 -0400)]
add test for parsing Map pattern in ParameterHandler

I think this makes for a nice usage example.

7 years agoMerge pull request #4140 from kronbichler/fix_gl_evaluation
Martin Kronbichler [Thu, 30 Mar 2017 14:05:40 +0000 (16:05 +0200)]
Merge pull request #4140 from kronbichler/fix_gl_evaluation

FEEvaluation: Fix collocation evaluation path

7 years agoMerge pull request #4138 from kronbichler/fe_eval_doc_update
Timo Heister [Thu, 30 Mar 2017 13:58:23 +0000 (09:58 -0400)]
Merge pull request #4138 from kronbichler/fe_eval_doc_update

Update documentation of FEEvaluation

7 years agoMerge pull request #4142 from kronbichler/fix_compilation_64_bit
Wolfgang Bangerth [Thu, 30 Mar 2017 13:34:54 +0000 (07:34 -0600)]
Merge pull request #4142 from kronbichler/fix_compilation_64_bit

Fix compilation with 64 bit indices.

7 years agoFix compilation with 64 bit indices. 4142/head
Martin Kronbichler [Thu, 30 Mar 2017 13:32:44 +0000 (15:32 +0200)]
Fix compilation with 64 bit indices.

7 years agoFEEvaluation: Fix collocation evaluation path 4140/head
Martin Kronbichler [Thu, 30 Mar 2017 12:35:03 +0000 (14:35 +0200)]
FEEvaluation: Fix collocation evaluation path

7 years agoUpdate documentation of FEEvaluation 4138/head
Martin Kronbichler [Thu, 30 Mar 2017 08:49:04 +0000 (10:49 +0200)]
Update documentation of FEEvaluation

7 years agoMerge pull request #4111 from kronbichler/fe_evaluation_gather_and_optimization
Martin Kronbichler [Thu, 30 Mar 2017 07:33:35 +0000 (09:33 +0200)]
Merge pull request #4111 from kronbichler/fe_evaluation_gather_and_optimization

Two optimizations to FEEvaluation

7 years agoImprove documentation, make names of data structures uniform 4111/head
Martin Kronbichler [Wed, 29 Mar 2017 19:40:40 +0000 (21:40 +0200)]
Improve documentation, make names of data structures uniform

7 years agoMerge pull request #4067 from tcclevenger/shared_tria_partition
Martin Kronbichler [Wed, 29 Mar 2017 19:44:37 +0000 (21:44 +0200)]
Merge pull request #4067 from tcclevenger/shared_tria_partition

Various partitioning method for parallel::shared::Triangulation

7 years agofixed some typos/added settings explanation 4067/head
tcclevenger [Wed, 29 Mar 2017 17:17:32 +0000 (13:17 -0400)]
fixed some typos/added settings explanation

7 years agoMerge pull request #4134 from kronbichler/fix_test_abf
Daniel Arndt [Wed, 29 Mar 2017 11:57:09 +0000 (13:57 +0200)]
Merge pull request #4134 from kronbichler/fix_test_abf

Fix test on some platforms

7 years agoDisable scatter as long as the indices are not fixed
Martin Kronbichler [Wed, 29 Mar 2017 09:51:49 +0000 (11:51 +0200)]
Disable scatter as long as the indices are not fixed

7 years agoAvoid overly cautious assertions in scatter
Martin Kronbichler [Wed, 29 Mar 2017 09:18:44 +0000 (11:18 +0200)]
Avoid overly cautious assertions in scatter

7 years agoFix test on some platforms 4134/head
Martin Kronbichler [Wed, 29 Mar 2017 07:18:55 +0000 (09:18 +0200)]
Fix test on some platforms

7 years agoMerge pull request #4131 from drwells/fix-quick-tests
Timo Heister [Tue, 28 Mar 2017 22:49:01 +0000 (18:49 -0400)]
Merge pull request #4131 from drwells/fix-quick-tests

Remove tests.h dependency from the quick tests.

7 years agoRemove tests.h dependency from the quick tests. 4131/head
David Wells [Tue, 28 Mar 2017 21:03:55 +0000 (17:03 -0400)]
Remove tests.h dependency from the quick tests.

The release candidates ship without this file.

7 years agoMerge pull request #4127 from kronbichler/fix_matrix_free_degree_9
Timo Heister [Tue, 28 Mar 2017 16:49:29 +0000 (12:49 -0400)]
Merge pull request #4127 from kronbichler/fix_matrix_free_degree_9

Fix bug in matrix-free evaluation kernel for degree 9 in 2D

7 years agoMake the stack size selection a single parameter 4127/head
Martin Kronbichler [Tue, 28 Mar 2017 14:08:07 +0000 (16:08 +0200)]
Make the stack size selection a single parameter

7 years agoMerge pull request #4126 from simonsticko/fe_nothing_interpolation_matrix
Martin Kronbichler [Tue, 28 Mar 2017 13:40:44 +0000 (15:40 +0200)]
Merge pull request #4126 from simonsticko/fe_nothing_interpolation_matrix

Implement get_interpolation_matrix on FE_Nothing.

7 years agoPut new code into separate function.
Martin Kronbichler [Tue, 28 Mar 2017 13:24:45 +0000 (15:24 +0200)]
Put new code into separate function.
Do not use function pointers.

7 years agoAdd changelog
Martin Kronbichler [Fri, 24 Mar 2017 13:42:59 +0000 (14:42 +0100)]
Add changelog

7 years agoUse vectorized gather operation if available.
Martin Kronbichler [Tue, 14 Mar 2017 09:25:25 +0000 (10:25 +0100)]
Use vectorized gather operation if available.

7 years agoUse simpler code path for quadratic operator evaluation path.
Martin Kronbichler [Tue, 14 Mar 2017 09:24:42 +0000 (10:24 +0100)]
Use simpler code path for quadratic operator evaluation path.

7 years agoFix bug in matrix-free evaluation kernel for degree 9 in 2D
Martin Kronbichler [Tue, 28 Mar 2017 10:11:49 +0000 (12:11 +0200)]
Fix bug in matrix-free evaluation kernel for degree 9 in 2D

7 years agoMerge pull request #4125 from simonsticko/doc_astyle_move
Daniel Arndt [Tue, 28 Mar 2017 09:32:09 +0000 (11:32 +0200)]
Merge pull request #4125 from simonsticko/doc_astyle_move

Update documentation on location of astyle.rc.

7 years agoImplement get_interpolation_matrix on FE_Nothing. 4126/head
Simon Sticko [Tue, 28 Mar 2017 08:45:45 +0000 (10:45 +0200)]
Implement get_interpolation_matrix on FE_Nothing.

7 years agoUpdate documentation on location of astyle.rc. 4125/head
Simon Sticko [Tue, 28 Mar 2017 07:13:03 +0000 (09:13 +0200)]
Update documentation on location of astyle.rc.

7 years agoMerge pull request #4117 from davydden/matrix_free_remove_depricated
Daniel Arndt [Mon, 27 Mar 2017 22:11:24 +0000 (00:11 +0200)]
Merge pull request #4117 from davydden/matrix_free_remove_depricated

matrix-free: remove deprecated mpi_communicator

7 years agoMerge pull request #4122 from tjhei/multigrid_warnings
Wolfgang Bangerth [Mon, 27 Mar 2017 21:47:47 +0000 (15:47 -0600)]
Merge pull request #4122 from tjhei/multigrid_warnings

Avoid multiple deprecation warnings in steps

7 years agomatrix-free: remove EXTRA_DIAGNOSTICS 4117/head
Denis Davydov [Mon, 27 Mar 2017 20:29:29 +0000 (23:29 +0300)]
matrix-free: remove EXTRA_DIAGNOSTICS

7 years agofix step-41 warning 4122/head
Timo Heister [Mon, 27 Mar 2017 19:32:56 +0000 (15:32 -0400)]
fix step-41 warning

7 years agoAvoid multigrid deprecation warnings in step-16/39
Timo Heister [Mon, 27 Mar 2017 19:16:41 +0000 (15:16 -0400)]
Avoid multigrid deprecation warnings in step-16/39

7 years agoMerge pull request #4120 from tjhei/fix_doxygen_errors
Wolfgang Bangerth [Mon, 27 Mar 2017 18:47:35 +0000 (12:47 -0600)]
Merge pull request #4120 from tjhei/fix_doxygen_errors

fix doxygen errors

7 years agofix doxygen errors 4120/head
Timo Heister [Mon, 27 Mar 2017 18:43:09 +0000 (14:43 -0400)]
fix doxygen errors

7 years agofix matrix-free unit tests
Denis Davydov [Sun, 26 Mar 2017 20:35:56 +0000 (22:35 +0200)]
fix matrix-free unit tests

7 years agomatrix-free: remove depreicated mpi_communicator
Denis Davydov [Sun, 26 Mar 2017 19:33:58 +0000 (21:33 +0200)]
matrix-free: remove depreicated mpi_communicator

7 years agoMerge pull request #4114 from masterleinad/fix_fe_abm
Wolfgang Bangerth [Sun, 26 Mar 2017 18:53:09 +0000 (12:53 -0600)]
Merge pull request #4114 from masterleinad/fix_fe_abm

Fix FE_ABF::convert_generalized_support_point_values_to_nodal_values

7 years agoFix FE_ABF::convert_generalized_support_point_values_to_nodal_values 4114/head
Daniel Arndt [Sun, 26 Mar 2017 15:44:07 +0000 (17:44 +0200)]
Fix FE_ABF::convert_generalized_support_point_values_to_nodal_values

7 years agoMerge pull request #4108 from kronbichler/fix_mg_transfer_reinit
Wolfgang Bangerth [Fri, 24 Mar 2017 12:23:49 +0000 (06:23 -0600)]
Merge pull request #4108 from kronbichler/fix_mg_transfer_reinit

Make sure to clean all data before filling MG transfer data fields

7 years agoMake sure to clean all data before filling MG transfer data fields 4108/head
Martin Kronbichler [Fri, 24 Mar 2017 08:55:25 +0000 (09:55 +0100)]
Make sure to clean all data before filling MG transfer data fields

7 years agoMerge pull request #4107 from bangerth/doc-update
David Wells [Thu, 23 Mar 2017 23:35:29 +0000 (19:35 -0400)]
Merge pull request #4107 from bangerth/doc-update

Update the documentation of DoFHandler::n_dofs().

7 years agoUpdate the documentation of DoFHandler::n_dofs(). 4107/head
Wolfgang Bangerth [Thu, 23 Mar 2017 23:20:12 +0000 (17:20 -0600)]
Update the documentation of DoFHandler::n_dofs().

7 years agoMerge pull request #4105 from tjhei/post-8.5-test-versions
Matthias Maier [Thu, 23 Mar 2017 19:44:38 +0000 (14:44 -0500)]
Merge pull request #4105 from tjhei/post-8.5-test-versions

post-8.5-version-numbers

7 years agopost-8.5-version-numbers 4105/head
Timo Heister [Thu, 23 Mar 2017 19:23:30 +0000 (15:23 -0400)]
post-8.5-version-numbers

7 years agoupdate VERSION
Timo Heister [Thu, 23 Mar 2017 19:03:03 +0000 (15:03 -0400)]
update VERSION

7 years agoMerge pull request #4099 from tjhei/doxygen_fixes
Wolfgang Bangerth [Thu, 23 Mar 2017 18:40:24 +0000 (12:40 -0600)]
Merge pull request #4099 from tjhei/doxygen_fixes

8.5 task: doxygen formatting fixes

7 years agoMerge pull request #4100 from tjhei/tag_filename
Wolfgang Bangerth [Thu, 23 Mar 2017 16:29:02 +0000 (10:29 -0600)]
Merge pull request #4100 from tjhei/tag_filename

8.5 task: update TAG file URL

7 years agoaddress comment 4099/head
Timo Heister [Thu, 23 Mar 2017 16:28:29 +0000 (12:28 -0400)]
address comment

7 years agoMerge pull request #4098 from bangerth/update-changes-file
Timo Heister [Thu, 23 Mar 2017 16:23:39 +0000 (12:23 -0400)]
Merge pull request #4098 from bangerth/update-changes-file

Replace individual files by one changelog for the whole release.

7 years agoAdjust for the upcoming release. 4098/head
Wolfgang Bangerth [Thu, 23 Mar 2017 16:15:02 +0000 (10:15 -0600)]
Adjust for the upcoming release.

7 years agoRemove now obsolete files.
Wolfgang Bangerth [Thu, 23 Mar 2017 15:55:43 +0000 (09:55 -0600)]
Remove now obsolete files.

7 years agoUpdate the changelog file for the release.
Wolfgang Bangerth [Thu, 23 Mar 2017 15:56:54 +0000 (09:56 -0600)]
Update the changelog file for the release.

7 years agoMerge pull request #4101 from bangerth/update-copyright
Timo Heister [Thu, 23 Mar 2017 16:14:20 +0000 (12:14 -0400)]
Merge pull request #4101 from bangerth/update-copyright

Update copyright years.

7 years agoUpdate copyright years. 4101/head
Wolfgang Bangerth [Thu, 23 Mar 2017 16:08:23 +0000 (10:08 -0600)]
Update copyright years.

7 years ago8.5 task: update TAG file URL 4100/head
Timo Heister [Thu, 23 Mar 2017 16:07:21 +0000 (12:07 -0400)]
8.5 task: update TAG file URL

7 years agoMerge pull request #4097 from masterleinad/check_cell_loop
Daniel Arndt [Thu, 23 Mar 2017 16:02:10 +0000 (17:02 +0100)]
Merge pull request #4097 from masterleinad/check_cell_loop

Check array access in MatrixFree::cell_loop

7 years agodoxygen formatting fixes
Timo Heister [Thu, 23 Mar 2017 15:57:07 +0000 (11:57 -0400)]
doxygen formatting fixes

- wrong indentation
- code blocks not marked correctly
- some @ref fixes

7 years agoCheck array access in MatrixFree::cell_loop 4097/head
Daniel Arndt [Thu, 23 Mar 2017 14:39:49 +0000 (15:39 +0100)]
Check array access in MatrixFree::cell_loop

7 years agoMerge pull request #4096 from kronbichler/fix_clang_warning_mapping
Timo Heister [Thu, 23 Mar 2017 13:44:04 +0000 (09:44 -0400)]
Merge pull request #4096 from kronbichler/fix_clang_warning_mapping

Fix warning with clang compiler

7 years agoMerge pull request #4064 from bangerth/replace-FE_interpolate
Luca Heltai [Thu, 23 Mar 2017 12:32:30 +0000 (13:32 +0100)]
Merge pull request #4064 from bangerth/replace-FE_interpolate

Replace FE::interpolate() by FE::convert_support_point_values_to_nodal_values().

7 years agoAdd warning with clang compiler 4096/head
Martin Kronbichler [Thu, 23 Mar 2017 12:23:21 +0000 (13:23 +0100)]
Add warning with clang compiler

7 years agoMerge pull request #3886 from kronbichler/master
Wolfgang Bangerth [Wed, 22 Mar 2017 21:49:17 +0000 (15:49 -0600)]
Merge pull request #3886 from kronbichler/master

Fix support points on quad for MappingQGeneric and StraightBoundary.

7 years agoMerge pull request #4094 from masterleinad/fix_indexset_asc_etc
Wolfgang Bangerth [Wed, 22 Mar 2017 21:34:46 +0000 (15:34 -0600)]
Merge pull request #4094 from masterleinad/fix_indexset_asc_etc

Refactor and fix IndexSet::is_ascending_and_one_to_one

7 years agoMerge pull request #4095 from masterleinad/fix_sparsity_compress
Timo Heister [Wed, 22 Mar 2017 20:53:14 +0000 (16:53 -0400)]
Merge pull request #4095 from masterleinad/fix_sparsity_compress

Check access in SparsityPatter::compress()

7 years agoMerge pull request #4091 from tamiko/opencascade_compatibility
Luca Heltai [Wed, 22 Mar 2017 20:01:58 +0000 (21:01 +0100)]
Merge pull request #4091 from tamiko/opencascade_compatibility

Opencascade 7 fixes

7 years agoWork on review comments 3886/head
Martin Kronbichler [Wed, 22 Mar 2017 19:20:30 +0000 (20:20 +0100)]
Work on review comments

7 years agoPerformance improvements. Augment documentation.
Martin Kronbichler [Sun, 19 Mar 2017 09:16:53 +0000 (10:16 +0100)]
Performance improvements. Augment documentation.

7 years agoFixed closest_point_to_shape. 4091/head
Luca Heltai [Wed, 22 Mar 2017 18:45:37 +0000 (19:45 +0100)]
Fixed closest_point_to_shape.

7 years agoFixed circle_normal_projection.
Luca Heltai [Wed, 22 Mar 2017 18:39:40 +0000 (19:39 +0100)]
Fixed circle_normal_projection.

7 years agoCheck access in SparsityPatter::compress() 4095/head
Daniel Arndt [Wed, 22 Mar 2017 18:11:52 +0000 (19:11 +0100)]
Check access in SparsityPatter::compress()

7 years agoRefactor and fix IndexSet::is_ascending_ad_one_to_one 4094/head
Daniel Arndt [Wed, 22 Mar 2017 17:17:06 +0000 (18:17 +0100)]
Refactor and fix IndexSet::is_ascending_ad_one_to_one

7 years agoCMake: Add TKSTEP209 to the opencascade link interface
Matthias Maier [Wed, 22 Mar 2017 02:16:54 +0000 (21:16 -0500)]
CMake: Add TKSTEP209 to the opencascade link interface

7 years agotests/opencascade: Fix two tests
Matthias Maier [Tue, 21 Mar 2017 19:34:16 +0000 (14:34 -0500)]
tests/opencascade: Fix two tests

7 years agoAdd a changes.h entry
Matthias Maier [Tue, 21 Mar 2017 19:08:39 +0000 (14:08 -0500)]
Add a changes.h entry

7 years agoCMake: Extract opencascade version in a more robust manner
Matthias Maier [Tue, 21 Mar 2017 19:00:04 +0000 (14:00 -0500)]
CMake: Extract opencascade version in a more robust manner

7 years agoOpencascade: Add an include for version 7 compatibility
Matthias Maier [Tue, 21 Mar 2017 18:53:38 +0000 (13:53 -0500)]
Opencascade: Add an include for version 7 compatibility

7 years agoOpencascade: Bugfix. Call Handle macro in a compatible fashion
Matthias Maier [Tue, 21 Mar 2017 18:52:24 +0000 (13:52 -0500)]
Opencascade: Bugfix. Call Handle macro in a compatible fashion

7 years agoOpencascade: Fix includes for version 7
Matthias Maier [Tue, 21 Mar 2017 18:51:15 +0000 (13:51 -0500)]
Opencascade: Fix includes for version 7

7 years agoCMake: Add include/opencascade to include path alternatives
Matthias Maier [Tue, 21 Mar 2017 18:12:31 +0000 (13:12 -0500)]
CMake: Add include/opencascade to include path alternatives

7 years agoMerge pull request #4086 from bangerth/improve-exception
Martin Kronbichler [Mon, 20 Mar 2017 10:46:01 +0000 (11:46 +0100)]
Merge pull request #4086 from bangerth/improve-exception

Improve the wording of an exception.

7 years agoMerge pull request #4087 from bangerth/update-reference
Daniel Arndt [Sun, 19 Mar 2017 21:39:25 +0000 (22:39 +0100)]
Merge pull request #4087 from bangerth/update-reference

Update the reference to a paper that has been accepted.

7 years agoUpdate the reference to a paper that has been accepted. 4087/head
Wolfgang Bangerth [Sun, 19 Mar 2017 21:31:18 +0000 (15:31 -0600)]
Update the reference to a paper that has been accepted.

7 years agoImprove the wording of an exception. 4086/head
Wolfgang Bangerth [Sun, 19 Mar 2017 21:28:08 +0000 (15:28 -0600)]
Improve the wording of an exception.

7 years agoRename variables in a function. 4064/head
Wolfgang Bangerth [Tue, 14 Mar 2017 13:30:44 +0000 (07:30 -0600)]
Rename variables in a function.

Match variable names at a calling site to the ones used in the called function.

7 years agoUse FE::convert_generalized_support_point_values_to_nodal_values().
Wolfgang Bangerth [Tue, 14 Mar 2017 00:46:45 +0000 (18:46 -0600)]
Use FE::convert_generalized_support_point_values_to_nodal_values().

7 years agoImplement the new FiniteElement::convert_generalized_support_point_values_to_nodal_va...
Wolfgang Bangerth [Mon, 13 Mar 2017 23:41:06 +0000 (17:41 -0600)]
Implement the new FiniteElement::convert_generalized_support_point_values_to_nodal_values interface.

This is easily done by copying the implementation of the
existing FiniteElement::interpolate() functions in the
various derived classes, removing the 'offset' argument,
and reordering+renaming the other two arguments.

7 years agoIntroduce FiniteElement::convert_generalized_support_point_values_to_nodal_values.
Wolfgang Bangerth [Fri, 24 Feb 2017 19:41:32 +0000 (12:41 -0700)]
Introduce FiniteElement::convert_generalized_support_point_values_to_nodal_values.


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