https://gitweb.dealii.org/ - dealii-svn.git/log

frohne [Thu, 28 Feb 2013 00:52:29 +0000 (00:52 +0000)]

more descriptions; add possible extensions

git-svn-id: https://svn.dealii.org/trunk@28634 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Thu, 28 Feb 2013 00:51:40 +0000 (00:51 +0000)]

more descriptions; add possible extensions

git-svn-id: https://svn.dealii.org/trunk@28633 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Wed, 27 Feb 2013 23:14:56 +0000 (23:14 +0000)]

fixing space and set definitions in the saddle point formulation

git-svn-id: https://svn.dealii.org/trunk@28625 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Wed, 27 Feb 2013 22:50:22 +0000 (22:50 +0000)]

fixing the right-hand-side in the linearization; removeing some backslashes

git-svn-id: https://svn.dealii.org/trunk@28624 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 27 Feb 2013 16:45:32 +0000 (16:45 +0000)]

Another integrator in the wrong place under doxygen

git-svn-id: https://svn.dealii.org/trunk@28617 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 27 Feb 2013 16:14:12 +0000 (16:14 +0000)]

Error in documentation

git-svn-id: https://svn.dealii.org/trunk@28616 0785d39b-7218-0410-832d-ea1e28bc413d

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heltai [Wed, 27 Feb 2013 15:38:21 +0000 (15:38 +0000)]

Fixed configure script for intel compilers which advertise as icc version XX (gcc version YY compatibility). These were recognized as gcc instead of icc.

git-svn-id: https://svn.dealii.org/trunk@28615 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 27 Feb 2013 15:20:34 +0000 (15:20 +0000)]

avoid deprecated functions and files

git-svn-id: https://svn.dealii.org/trunk@28614 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 27 Feb 2013 15:11:29 +0000 (15:11 +0000)]

avoid deprecations

git-svn-id: https://svn.dealii.org/trunk@28613 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 27 Feb 2013 14:57:35 +0000 (14:57 +0000)]

use integral notation instead of inner product

git-svn-id: https://svn.dealii.org/trunk@28612 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 27 Feb 2013 14:54:29 +0000 (14:54 +0000)]

do not put functions into module, since this makes them vanish from the namespace

git-svn-id: https://svn.dealii.org/trunk@28611 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 27 Feb 2013 14:52:27 +0000 (14:52 +0000)]

add missing quadrature weight and some documentation

git-svn-id: https://svn.dealii.org/trunk@28610 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 27 Feb 2013 14:07:45 +0000 (14:07 +0000)]

Add -lstdc++ to LDFLAGS when using Clang on OS X.

git-svn-id: https://svn.dealii.org/trunk@28608 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 27 Feb 2013 09:51:11 +0000 (09:51 +0000)]

more typos by Felix Gruber

git-svn-id: https://svn.dealii.org/trunk@28605 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 27 Feb 2013 09:49:34 +0000 (09:49 +0000)]

more typos by Felix Gruber

git-svn-id: https://svn.dealii.org/trunk@28604 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Wed, 27 Feb 2013 09:49:28 +0000 (09:49 +0000)]

more typos by Felix Gruber

git-svn-id: https://svn.dealii.org/trunk@28603 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 27 Feb 2013 05:04:48 +0000 (05:04 +0000)]

update changes and news for release

git-svn-id: https://svn.dealii.org/trunk@28602 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 27 Feb 2013 04:47:34 +0000 (04:47 +0000)]

fix warning

git-svn-id: https://svn.dealii.org/trunk@28601 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 27 Feb 2013 04:39:38 +0000 (04:39 +0000)]

fix test output

git-svn-id: https://svn.dealii.org/trunk@28600 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 27 Feb 2013 04:25:41 +0000 (04:25 +0000)]

Fix name after recent renames.

git-svn-id: https://svn.dealii.org/trunk@28599 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 27 Feb 2013 04:24:08 +0000 (04:24 +0000)]

Rename GridTools::laplace_transformation to laplace_transform.

git-svn-id: https://svn.dealii.org/trunk@28598 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 27 Feb 2013 04:18:02 +0000 (04:18 +0000)]

Move GridGenerator::laplace_transformation to GridTools.

git-svn-id: https://svn.dealii.org/trunk@28597 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 27 Feb 2013 04:16:58 +0000 (04:16 +0000)]

update authors.html for release

git-svn-id: https://svn.dealii.org/trunk@28596 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 27 Feb 2013 04:12:11 +0000 (04:12 +0000)]

update authors.html for release

git-svn-id: https://svn.dealii.org/trunk@28595 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 27 Feb 2013 04:00:16 +0000 (04:00 +0000)]

Add one comment.

git-svn-id: https://svn.dealii.org/trunk@28594 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 26 Feb 2013 21:47:32 +0000 (21:47 +0000)]

fix bug in doxygen formatting

git-svn-id: https://svn.dealii.org/trunk@28593 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 26 Feb 2013 18:55:37 +0000 (18:55 +0000)]

Cleanup

git-svn-id: https://svn.dealii.org/trunk@28592 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 26 Feb 2013 18:54:25 +0000 (18:54 +0000)]

One more try to get the image inclusion right

git-svn-id: https://svn.dealii.org/trunk@28591 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 26 Feb 2013 18:52:10 +0000 (18:52 +0000)]

Revert "Fixup 28576 :-)"

This reverts commit 753da5a9b2934ede64dd6ae92d6d55dc1fa29bc5.

git-svn-id: https://svn.dealii.org/trunk@28590 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 26 Feb 2013 18:50:41 +0000 (18:50 +0000)]

Fixup 28576 :-)

git-svn-id: https://svn.dealii.org/trunk@28587 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Tue, 26 Feb 2013 15:14:05 +0000 (15:14 +0000)]

remove steps from image path

git-svn-id: https://svn.dealii.org/trunk@28576 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Tue, 26 Feb 2013 10:46:42 +0000 (10:46 +0000)]

Note on changing get_dof-indices for refined cells

git-svn-id: https://svn.dealii.org/trunk@28567 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 26 Feb 2013 04:58:00 +0000 (04:58 +0000)]

Minor adjustments. Use the possibility of simply passing a function pointer to GridTools::transform in one of the examples. Make sure we use GridTools::distort_random, not Triangulation::distort_random.

git-svn-id: https://svn.dealii.org/trunk@28565 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 26 Feb 2013 04:57:49 +0000 (04:57 +0000)]

Deprecate Triangulation::distort_random. Revive it as GridTools::distort_random.

git-svn-id: https://svn.dealii.org/trunk@28564 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 25 Feb 2013 23:21:10 +0000 (23:21 +0000)]

update examples wrt compress()

git-svn-id: https://svn.dealii.org/trunk@28563 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 25 Feb 2013 23:16:29 +0000 (23:16 +0000)]

update glossary again

git-svn-id: https://svn.dealii.org/trunk@28562 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 25 Feb 2013 23:16:09 +0000 (23:16 +0000)]

Parallel sparse matrices now also require the use of compress(VectorOperation) like vectors do. Old functions are now deprecated.

git-svn-id: https://svn.dealii.org/trunk@28561 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 25 Feb 2013 21:20:19 +0000 (21:20 +0000)]

extend glossary about compress()

git-svn-id: https://svn.dealii.org/trunk@28560 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 25 Feb 2013 21:18:53 +0000 (21:18 +0000)]

extend glossary about compress()

git-svn-id: https://svn.dealii.org/trunk@28559 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Mon, 25 Feb 2013 19:07:45 +0000 (19:07 +0000)]

minor changes; fixing \gamma_{\text{iso}}

git-svn-id: https://svn.dealii.org/trunk@28558 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Mon, 25 Feb 2013 15:45:14 +0000 (15:45 +0000)]

changes in the assembler_mass_matrix_diagonal function to (\varphi_i,1)

git-svn-id: https://svn.dealii.org/trunk@28554 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Mon, 25 Feb 2013 15:25:17 +0000 (15:25 +0000)]

add test for adaptive dg multigrid

git-svn-id: https://svn.dealii.org/trunk@28553 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Mon, 25 Feb 2013 15:18:15 +0000 (15:18 +0000)]

avoid deprecated functions

git-svn-id: https://svn.dealii.org/trunk@28552 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Mon, 25 Feb 2013 14:55:19 +0000 (14:55 +0000)]

undo commit 28489 which screwed up multigrid for DG methods

git-svn-id: https://svn.dealii.org/trunk@28551 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 25 Feb 2013 04:21:25 +0000 (04:21 +0000)]

Augment documentation.

git-svn-id: https://svn.dealii.org/trunk@28544 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 25 Feb 2013 04:21:05 +0000 (04:21 +0000)]

Add more documentation.

git-svn-id: https://svn.dealii.org/trunk@28543 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 24 Feb 2013 20:10:53 +0000 (20:10 +0000)]

Read through the introduction.

git-svn-id: https://svn.dealii.org/trunk@28542 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Sun, 24 Feb 2013 20:10:21 +0000 (20:10 +0000)]

add a command to the adaptive mesh refinement

git-svn-id: https://svn.dealii.org/trunk@28541 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Sun, 24 Feb 2013 19:49:31 +0000 (19:49 +0000)]

output for a ball as obstacle

git-svn-id: https://svn.dealii.org/trunk@28540 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 24 Feb 2013 19:14:30 +0000 (19:14 +0000)]

Various edits around the tutorial programs.

git-svn-id: https://svn.dealii.org/trunk@28539 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Sun, 24 Feb 2013 18:51:12 +0000 (18:51 +0000)]

changes in section 7

git-svn-id: https://svn.dealii.org/trunk@28538 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 24 Feb 2013 02:45:20 +0000 (02:45 +0000)]

updates to benchmark scripts

git-svn-id: https://svn.dealii.org/trunk@28537 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Sat, 23 Feb 2013 02:51:58 +0000 (02:51 +0000)]

setting the newton iteration index like in the documentation

git-svn-id: https://svn.dealii.org/trunk@28536 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Fri, 22 Feb 2013 23:25:55 +0000 (23:25 +0000)]

integrating the changes in section 7 for damping

git-svn-id: https://svn.dealii.org/trunk@28535 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Fri, 22 Feb 2013 23:05:46 +0000 (23:05 +0000)]

finishing the description of the damped newton method in section 7

git-svn-id: https://svn.dealii.org/trunk@28534 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 22 Feb 2013 22:23:12 +0000 (22:23 +0000)]

Answer one question.

git-svn-id: https://svn.dealii.org/trunk@28533 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 22 Feb 2013 22:12:16 +0000 (22:12 +0000)]

Add another comment on why we multiply by K^{-1}.

git-svn-id: https://svn.dealii.org/trunk@28532 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 22 Feb 2013 19:19:15 +0000 (19:19 +0000)]

fix compilation with clang

git-svn-id: https://svn.dealii.org/trunk@28530 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 22 Feb 2013 16:42:36 +0000 (16:42 +0000)]

fix one image

git-svn-id: https://svn.dealii.org/trunk@28528 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 22 Feb 2013 16:36:16 +0000 (16:36 +0000)]

add step-49

git-svn-id: https://svn.dealii.org/trunk@28527 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 22 Feb 2013 16:23:43 +0000 (16:23 +0000)]

moved images online from tutorial steps

git-svn-id: https://svn.dealii.org/trunk@28526 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 22 Feb 2013 16:21:55 +0000 (16:21 +0000)]

add step 49 to navbar

git-svn-id: https://svn.dealii.org/trunk@28525 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 22 Feb 2013 16:02:58 +0000 (16:02 +0000)]

remove image from step-50 for now

git-svn-id: https://svn.dealii.org/trunk@28524 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 22 Feb 2013 07:50:30 +0000 (07:50 +0000)]

Oops

git-svn-id: https://svn.dealii.org/trunk@28523 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 22 Feb 2013 07:50:17 +0000 (07:50 +0000)]

Change to the revision that was actually modified

git-svn-id: https://svn.dealii.org/trunk@28522 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Fri, 22 Feb 2013 03:58:08 +0000 (03:58 +0000)]

extend the algorithm by a damping step - section 7

git-svn-id: https://svn.dealii.org/trunk@28521 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Thu, 21 Feb 2013 22:11:34 +0000 (22:11 +0000)]

declare yield as double again

git-svn-id: https://svn.dealii.org/trunk@28519 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 21 Feb 2013 20:26:17 +0000 (20:26 +0000)]

More markup fixes.

git-svn-id: https://svn.dealii.org/trunk@28518 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 21 Feb 2013 20:24:29 +0000 (20:24 +0000)]

Note something in relation to step-20.

git-svn-id: https://svn.dealii.org/trunk@28517 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 21 Feb 2013 20:12:44 +0000 (20:12 +0000)]

Make notation consistent with the way we discuss this in the video
lecture on the topic.

git-svn-id: https://svn.dealii.org/trunk@28516 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 21 Feb 2013 20:03:54 +0000 (20:03 +0000)]

The implementation of Tvmult was complete garbage. Fix it.

git-svn-id: https://svn.dealii.org/trunk@28515 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 21 Feb 2013 20:01:53 +0000 (20:01 +0000)]

Mention step-43.

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bangerth [Thu, 21 Feb 2013 20:00:36 +0000 (20:00 +0000)]

Make notation consistent with the way we discuss this in the video
lecture on the topic. Also fix a bug in the description of the testcase.

git-svn-id: https://svn.dealii.org/trunk@28513 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Thu, 21 Feb 2013 16:32:58 +0000 (16:32 +0000)]

commit again because of an wrong revert

git-svn-id: https://svn.dealii.org/trunk@28512 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Thu, 21 Feb 2013 16:28:13 +0000 (16:28 +0000)]

fix yield and cell_number as unsigned int instead of double

git-svn-id: https://svn.dealii.org/trunk@28511 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 21 Feb 2013 12:38:10 +0000 (12:38 +0000)]

Augment documentation.

git-svn-id: https://svn.dealii.org/trunk@28508 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 21 Feb 2013 02:47:35 +0000 (02:47 +0000)]

Avoid use of deprecated constructor.

git-svn-id: https://svn.dealii.org/trunk@28507 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 21 Feb 2013 02:47:24 +0000 (02:47 +0000)]

Improve formatting.

git-svn-id: https://svn.dealii.org/trunk@28506 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 21 Feb 2013 02:46:08 +0000 (02:46 +0000)]

Avoid use of deprecated variable.

git-svn-id: https://svn.dealii.org/trunk@28505 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 21 Feb 2013 02:45:45 +0000 (02:45 +0000)]

Be consistent in what we deprecate and if it's deprecated in a comment then do so as an attribute to the declaration as well.

git-svn-id: https://svn.dealii.org/trunk@28504 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Thu, 21 Feb 2013 01:13:15 +0000 (01:13 +0000)]

add computing_timer.disable_output()

git-svn-id: https://svn.dealii.org/trunk@28503 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Thu, 21 Feb 2013 00:38:41 +0000 (00:38 +0000)]

changing the functions for computation time

git-svn-id: https://svn.dealii.org/trunk@28502 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 21 Feb 2013 00:14:14 +0000 (00:14 +0000)]

Better align.

git-svn-id: https://svn.dealii.org/trunk@28501 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 21 Feb 2013 00:08:20 +0000 (00:08 +0000)]

Something more.

git-svn-id: https://svn.dealii.org/trunk@28500 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 21 Feb 2013 00:07:11 +0000 (00:07 +0000)]

Provide more explanation for the Tvmult function.

git-svn-id: https://svn.dealii.org/trunk@28499 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 21 Feb 2013 00:01:52 +0000 (00:01 +0000)]

Remove more unused stuff.

git-svn-id: https://svn.dealii.org/trunk@28498 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 20 Feb 2013 23:58:34 +0000 (23:58 +0000)]

Remove the Tvmult function. In fact, there was no such function
anyway: Its declaration and implementation had been commented out all
along. We can always re-add if anyone finds a need for it.

git-svn-id: https://svn.dealii.org/trunk@28497 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Wed, 20 Feb 2013 22:28:57 +0000 (22:28 +0000)]

fix the computation of cell_constitution for the parallel case

git-svn-id: https://svn.dealii.org/trunk@28496 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 20 Feb 2013 16:39:30 +0000 (16:39 +0000)]

add some notes

git-svn-id: https://svn.dealii.org/trunk@28494 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 20 Feb 2013 15:12:34 +0000 (15:12 +0000)]

step-49: some text fixes

git-svn-id: https://svn.dealii.org/trunk@28493 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 20 Feb 2013 14:08:54 +0000 (14:08 +0000)]

Fix compilation of the ARPACK interfaces.

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kronbichler [Wed, 20 Feb 2013 09:14:33 +0000 (09:14 +0000)]

Move some code out of a loop where it is only called in the first iteration as this enhances code readability.

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heister [Tue, 19 Feb 2013 23:02:36 +0000 (23:02 +0000)]

add test

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heister [Tue, 19 Feb 2013 23:02:20 +0000 (23:02 +0000)]

add test

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heister [Tue, 19 Feb 2013 22:49:52 +0000 (22:49 +0000)]

new constructor/reinit for PETScWrappers::MPI::BlockVector using IndexSets

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heister [Tue, 19 Feb 2013 22:47:18 +0000 (22:47 +0000)]

make a bunch of constructors 'explicit'

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heister [Tue, 19 Feb 2013 22:44:35 +0000 (22:44 +0000)]

make a bunch of constructors 'explicit'

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heister [Tue, 19 Feb 2013 19:18:17 +0000 (19:18 +0000)]

revert accidental whitespace change

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heister [Tue, 19 Feb 2013 19:17:13 +0000 (19:17 +0000)]

add PETScWrappers::*Matrix::add(other, factor) with test. Patch by Jose Javier Munoz Criollo

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frohne [Tue, 19 Feb 2013 18:36:34 +0000 (18:36 +0000)]

add a second example for an obstacle (a ball); break the damping loop for j=1 in solve_newton()

git-svn-id: https://svn.dealii.org/trunk@28477 0785d39b-7218-0410-832d-ea1e28bc413d

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