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https://gitweb.dealii.org/ - dealii-svn.git/log
turcksin [Sun, 26 Jan 2014 20:22:13 +0000 (20:22 +0000)]
Merge from trunk.
git-svn-id: https://svn.dealii.org/branches/branch_paralution@32319
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bangerth [Sun, 26 Jan 2014 19:36:28 +0000 (19:36 +0000)]
Disallow calling certain functions that have to do with active_fe_index on cells that are not in fact active. Fix the various places where we used to do so (and which probably produced something that made not much sense).
git-svn-id: https://svn.dealii.org/trunk@32318
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bangerth [Sun, 26 Jan 2014 19:36:10 +0000 (19:36 +0000)]
Disallow calling certain functions that have to do with active_fe_index on cells that are not in fact active. Fix the various places where we used to do so (and which probably produced something that made not much sense).
git-svn-id: https://svn.dealii.org/trunk@32317
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bangerth [Sun, 26 Jan 2014 18:47:48 +0000 (18:47 +0000)]
Fix a forgotten case with FENothing (thanks to a testcase by Krzysztof Bzowski).
git-svn-id: https://svn.dealii.org/trunk@32316
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maier [Sun, 26 Jan 2014 14:55:30 +0000 (14:55 +0000)]
CMake: Bugfix: Strip leading and trailing whitespace from linker flags in
order to not confuse cmake-2.8.8
git-svn-id: https://svn.dealii.org/trunk@32315
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maier [Sun, 26 Jan 2014 11:44:31 +0000 (11:44 +0000)]
CMake: Improve error message for invalid user provided CXX and LD flags
git-svn-id: https://svn.dealii.org/trunk@32314
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bangerth [Sat, 25 Jan 2014 14:43:00 +0000 (14:43 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@32313
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bangerth [Sat, 25 Jan 2014 13:20:09 +0000 (13:20 +0000)]
More cleanups in SolutionTransfer.
git-svn-id: https://svn.dealii.org/trunk@32312
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maier [Sat, 25 Jan 2014 09:53:35 +0000 (09:53 +0000)]
CMake: Bugfix: Set a compiler option for the correct build type
git-svn-id: https://svn.dealii.org/trunk@32311
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bangerth [Sat, 25 Jan 2014 04:11:46 +0000 (04:11 +0000)]
Clean up a good amount of code. In particular, do not try to access fe_indices of cells that are not active, since no finite element space is associated with them.
git-svn-id: https://svn.dealii.org/trunk@32310
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bangerth [Sat, 25 Jan 2014 04:09:13 +0000 (04:09 +0000)]
Avoid directly accessing the active_fe_index of a cell that is at this
point no longer active.
git-svn-id: https://svn.dealii.org/trunk@32309
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bangerth [Sat, 25 Jan 2014 02:08:49 +0000 (02:08 +0000)]
Remove a hunk of code that was forgotten in r32297.
git-svn-id: https://svn.dealii.org/trunk@32308
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heister [Fri, 24 Jan 2014 23:18:58 +0000 (23:18 +0000)]
add script to check doxygen formatting
git-svn-id: https://svn.dealii.org/trunk@32307
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heister [Fri, 24 Jan 2014 21:06:34 +0000 (21:06 +0000)]
put deprecated functions into own doxygen group, fix doxygen formatting
git-svn-id: https://svn.dealii.org/trunk@32306
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heister [Fri, 24 Jan 2014 21:05:43 +0000 (21:05 +0000)]
fix doxygen grouping tags
git-svn-id: https://svn.dealii.org/trunk@32305
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heister [Fri, 24 Jan 2014 21:01:03 +0000 (21:01 +0000)]
remove unused variable in quicktest
git-svn-id: https://svn.dealii.org/trunk@32304
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heister [Fri, 24 Jan 2014 21:00:30 +0000 (21:00 +0000)]
fix quick_test
git-svn-id: https://svn.dealii.org/trunk@32303
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kronbichler [Fri, 24 Jan 2014 16:52:51 +0000 (16:52 +0000)]
Fix use of freed memory: Change when to reset the vector
git-svn-id: https://svn.dealii.org/trunk@32300
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heister [Fri, 24 Jan 2014 16:05:50 +0000 (16:05 +0000)]
fix invalid memory access in gridin::read_vtk
git-svn-id: https://svn.dealii.org/trunk@32299
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heister [Fri, 24 Jan 2014 15:47:40 +0000 (15:47 +0000)]
improve error checks and comments for parallel::distributed::Triangulation::load/save
git-svn-id: https://svn.dealii.org/trunk@32298
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bangerth [Fri, 24 Jan 2014 15:33:23 +0000 (15:33 +0000)]
Disallow calling DoFAccessor::set_active_fe_index on non-active cells.
git-svn-id: https://svn.dealii.org/trunk@32297
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bangerth [Fri, 24 Jan 2014 15:33:11 +0000 (15:33 +0000)]
Adjust a few tests to not call set_active_fe_index() on non-active cells.
git-svn-id: https://svn.dealii.org/trunk@32296
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bangerth [Fri, 24 Jan 2014 13:00:43 +0000 (13:00 +0000)]
Mention Martin's change from a couple of days ago.
git-svn-id: https://svn.dealii.org/trunk@32295
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maier [Fri, 24 Jan 2014 11:25:42 +0000 (11:25 +0000)]
CMake: Cleanup: Remove obsolete macro, unify naming of internal macros
git-svn-id: https://svn.dealii.org/trunk@32294
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kronbichler [Fri, 24 Jan 2014 08:11:33 +0000 (08:11 +0000)]
Adjust test output
git-svn-id: https://svn.dealii.org/trunk@32293
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kronbichler [Thu, 23 Jan 2014 21:22:40 +0000 (21:22 +0000)]
Fix test case with 64 bits
git-svn-id: https://svn.dealii.org/trunk@32292
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ryan.grove [Thu, 23 Jan 2014 19:18:05 +0000 (19:18 +0000)]
Fixed typo in step-2 tutorial program.
git-svn-id: https://svn.dealii.org/trunk@32291
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maier [Thu, 23 Jan 2014 18:01:47 +0000 (18:01 +0000)]
CMake: Bugfix: Clear compile variables prior to populating
git-svn-id: https://svn.dealii.org/trunk@32290
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heister [Thu, 23 Jan 2014 17:26:42 +0000 (17:26 +0000)]
fix invalid memory access caused by undefined order of construction of static members (found with ASAN)
git-svn-id: https://svn.dealii.org/trunk@32289
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bangerth [Wed, 22 Jan 2014 21:48:05 +0000 (21:48 +0000)]
Some more from Winnifred.
git-svn-id: https://svn.dealii.org/trunk@32287
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bangerth [Wed, 22 Jan 2014 19:13:57 +0000 (19:13 +0000)]
Patch by Martin Steigemann: Handle the case of zero error indicators better when finding the threshold for mesh refinement.
git-svn-id: https://svn.dealii.org/trunk@32286
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heister [Wed, 22 Jan 2014 15:51:32 +0000 (15:51 +0000)]
step-4: write constants as doubles
git-svn-id: https://svn.dealii.org/trunk@32285
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maier [Wed, 22 Jan 2014 12:16:50 +0000 (12:16 +0000)]
Remove obsolete scripts
git-svn-id: https://svn.dealii.org/trunk@32284
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heister [Tue, 21 Jan 2014 22:10:31 +0000 (22:10 +0000)]
update p4est instructions, remove some outdated stuff
git-svn-id: https://svn.dealii.org/trunk@32283
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kronbichler [Tue, 21 Jan 2014 21:08:38 +0000 (21:08 +0000)]
Adjust test output
git-svn-id: https://svn.dealii.org/trunk@32282
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bangerth [Tue, 21 Jan 2014 17:24:10 +0000 (17:24 +0000)]
Do not set active_fe_index values on non-active cells.
git-svn-id: https://svn.dealii.org/trunk@32281
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heister [Tue, 21 Jan 2014 15:44:16 +0000 (15:44 +0000)]
fix broken PETScWrappers::MPI::Vector::print() in parallel
git-svn-id: https://svn.dealii.org/trunk@32280
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heister [Tue, 21 Jan 2014 14:44:40 +0000 (14:44 +0000)]
fix another place where we should use MPI_Allreduce instead of MPI_Reduce
git-svn-id: https://svn.dealii.org/trunk@32279
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kronbichler [Tue, 21 Jan 2014 08:30:25 +0000 (08:30 +0000)]
Test extract_row_copy, fix two bugs
git-svn-id: https://svn.dealii.org/trunk@32276
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kronbichler [Tue, 21 Jan 2014 07:38:45 +0000 (07:38 +0000)]
Fix test
git-svn-id: https://svn.dealii.org/trunk@32275
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bangerth [Tue, 21 Jan 2014 07:34:12 +0000 (07:34 +0000)]
Improve error message.
git-svn-id: https://svn.dealii.org/trunk@32274
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bangerth [Tue, 21 Jan 2014 06:49:27 +0000 (06:49 +0000)]
Clear active_fe_index flags on non-active cells since they have no meaning.
git-svn-id: https://svn.dealii.org/trunk@32273
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bangerth [Tue, 21 Jan 2014 06:44:34 +0000 (06:44 +0000)]
Another test.
git-svn-id: https://svn.dealii.org/trunk@32272
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bangerth [Tue, 21 Jan 2014 06:39:18 +0000 (06:39 +0000)]
Leave a comment to clarify things.
git-svn-id: https://svn.dealii.org/trunk@32271
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bangerth [Tue, 21 Jan 2014 06:31:36 +0000 (06:31 +0000)]
Fix the same problem again in another location.
git-svn-id: https://svn.dealii.org/trunk@32270
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bangerth [Tue, 21 Jan 2014 06:20:58 +0000 (06:20 +0000)]
Fix a recently introduced problem with SolutionTransfer.
git-svn-id: https://svn.dealii.org/trunk@32269
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bangerth [Tue, 21 Jan 2014 03:45:06 +0000 (03:45 +0000)]
Patch by Mihai: Also extend the ability to deal with explicit FE spaces to set_dof_values_by_interpolation.
git-svn-id: https://svn.dealii.org/trunk@32268
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kronbichler [Mon, 20 Jan 2014 20:01:30 +0000 (20:01 +0000)]
Add extract_row_copy method to chunk sparse matrix since iterators are very slow
git-svn-id: https://svn.dealii.org/trunk@32267
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kronbichler [Mon, 20 Jan 2014 16:40:32 +0000 (16:40 +0000)]
Allow use of AssertDimension without 'using namespace dealii'
git-svn-id: https://svn.dealii.org/trunk@32266
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young [Mon, 20 Jan 2014 12:05:00 +0000 (12:05 +0000)]
Slightly extend full matrix interface.
git-svn-id: https://svn.dealii.org/trunk@32265
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kronbichler [Mon, 20 Jan 2014 12:03:12 +0000 (12:03 +0000)]
Simplify exchange of data in Trilinos sparse matrix reinit: Can use the nonlocal_graph directly. Apparently, I would need another entry point into distribute_sparsity_pattern to fix the deal.II transfer.
git-svn-id: https://svn.dealii.org/trunk@32264
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kronbichler [Mon, 20 Jan 2014 12:03:00 +0000 (12:03 +0000)]
Simplify exchange of data in Trilinos sparse matrix reinit: Can use the nonlocal_graph directly. Apparently, I would need another entry point into distribute_sparsity_pattern to fix the deal.II transfer.
git-svn-id: https://svn.dealii.org/trunk@32263
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kronbichler [Mon, 20 Jan 2014 09:01:13 +0000 (09:01 +0000)]
Need to add a few more entries to non-local part of sparsity pattern for MeshWorker assembly. Now the reason for failing MG tests is a wrong prolongation matrix where some non-local rows get lost
git-svn-id: https://svn.dealii.org/trunk@32260
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kronbichler [Mon, 20 Jan 2014 08:59:59 +0000 (08:59 +0000)]
Fix failure of multigrid on some OpenMPI versions
git-svn-id: https://svn.dealii.org/trunk@32259
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kronbichler [Sun, 19 Jan 2014 22:06:41 +0000 (22:06 +0000)]
Try to fix some tests by adding more elements to sparsity pattern over processor boundaries
git-svn-id: https://svn.dealii.org/trunk@32258
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kronbichler [Sun, 19 Jan 2014 21:53:50 +0000 (21:53 +0000)]
Do not create non-local graph when there are no ghost rows specified.
git-svn-id: https://svn.dealii.org/trunk@32257
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kronbichler [Sun, 19 Jan 2014 20:59:03 +0000 (20:59 +0000)]
Fix 64 bit bug
git-svn-id: https://svn.dealii.org/trunk@32256
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kronbichler [Sun, 19 Jan 2014 20:54:54 +0000 (20:54 +0000)]
Correct test output
git-svn-id: https://svn.dealii.org/trunk@32255
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kronbichler [Sun, 19 Jan 2014 19:54:31 +0000 (19:54 +0000)]
Allow constant modes for FE_RaviartThomas and FE_Nedelec.
git-svn-id: https://svn.dealii.org/trunk@32254
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kronbichler [Sun, 19 Jan 2014 14:29:09 +0000 (14:29 +0000)]
Fix extract_constant_modes for FE_DGP etc.
git-svn-id: https://svn.dealii.org/trunk@32253
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kronbichler [Sat, 18 Jan 2014 22:41:19 +0000 (22:41 +0000)]
Fix at least one issue with my commit: The flux sparsity pattern needs to include other-other coupling when using MeshWorker
git-svn-id: https://svn.dealii.org/trunk@32251
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bangerth [Sat, 18 Jan 2014 19:30:44 +0000 (19:30 +0000)]
New tests.
git-svn-id: https://svn.dealii.org/trunk@32250
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bangerth [Sat, 18 Jan 2014 19:30:26 +0000 (19:30 +0000)]
Implement more functionality for get_interpolated_dof_values.
git-svn-id: https://svn.dealii.org/trunk@32249
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kronbichler [Sat, 18 Jan 2014 16:46:56 +0000 (16:46 +0000)]
Fix warning
git-svn-id: https://svn.dealii.org/trunk@32247
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kronbichler [Sat, 18 Jan 2014 16:22:14 +0000 (16:22 +0000)]
Use thread-safe path for Trilinos matrix assembly also when initializing with a CompressedSimpleSparsityPattern
git-svn-id: https://svn.dealii.org/trunk@32246
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heister [Fri, 17 Jan 2014 22:49:20 +0000 (22:49 +0000)]
add test for all_zero
git-svn-id: https://svn.dealii.org/trunk@32243
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heister [Fri, 17 Jan 2014 22:46:29 +0000 (22:46 +0000)]
fix all_zero() for PETSc vectors. add documentation for Trilinos as well.
git-svn-id: https://svn.dealii.org/trunk@32242
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turcksin [Fri, 17 Jan 2014 22:32:14 +0000 (22:32 +0000)]
Merge from trunk.
git-svn-id: https://svn.dealii.org/branches/branch_paralution@32241
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bangerth [Fri, 17 Jan 2014 22:02:15 +0000 (22:02 +0000)]
Disallow calling some functions in the hp context on non-active cells.
git-svn-id: https://svn.dealii.org/trunk@32240
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bangerth [Fri, 17 Jan 2014 22:02:02 +0000 (22:02 +0000)]
Disallow calling some functions in the hp context on non-active cells.
git-svn-id: https://svn.dealii.org/trunk@32239
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bangerth [Fri, 17 Jan 2014 20:56:08 +0000 (20:56 +0000)]
Improve error message.
git-svn-id: https://svn.dealii.org/trunk@32238
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heister [Fri, 17 Jan 2014 17:07:34 +0000 (17:07 +0000)]
fix typo
git-svn-id: https://svn.dealii.org/trunk@32235
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bangerth [Fri, 17 Jan 2014 16:48:45 +0000 (16:48 +0000)]
Capitalize 'stokes'.
git-svn-id: https://svn.dealii.org/trunk@32234
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young [Fri, 17 Jan 2014 12:54:48 +0000 (12:54 +0000)]
Fix typo.
git-svn-id: https://svn.dealii.org/trunk@32233
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kronbichler [Fri, 17 Jan 2014 07:52:11 +0000 (07:52 +0000)]
Improve comments
git-svn-id: https://svn.dealii.org/trunk@32232
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kronbichler [Fri, 17 Jan 2014 07:26:11 +0000 (07:26 +0000)]
Initialize Trilinos parallel matrices with additional relevant set in order to allow for multiple threads to write into the matrix (even though we don't use this functionality right now).
git-svn-id: https://svn.dealii.org/trunk@32231
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kronbichler [Thu, 16 Jan 2014 12:40:23 +0000 (12:40 +0000)]
Fix quadratic complexity in number of ranges in two methods. Do not directly insert into an IndexSet with MGTools::extract_inner_interface_dofs.
git-svn-id: https://svn.dealii.org/trunk@32224
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bangerth [Wed, 15 Jan 2014 22:25:37 +0000 (22:25 +0000)]
Fix typo.
git-svn-id: https://svn.dealii.org/trunk@32222
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heister [Wed, 15 Jan 2014 21:22:52 +0000 (21:22 +0000)]
make it more clear the hyper_L works in 2d and 3d.
git-svn-id: https://svn.dealii.org/trunk@32221
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buerg [Wed, 15 Jan 2014 20:16:19 +0000 (20:16 +0000)]
Fix tests/fe/crash_01.cc.
git-svn-id: https://svn.dealii.org/trunk@32220
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bangerth [Wed, 15 Jan 2014 16:44:10 +0000 (16:44 +0000)]
Fully qualify a name to make MS VC++ happy.
git-svn-id: https://svn.dealii.org/trunk@32219
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bangerth [Wed, 15 Jan 2014 16:43:16 +0000 (16:43 +0000)]
Try not to confuse MS VC by having this:
estimate (...,
const Function<spacedim> */*coefficient*/,
...)
where MSVC gets tripped up by the */ thinking it closes a comment.
git-svn-id: https://svn.dealii.org/trunk@32218
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bangerth [Wed, 15 Jan 2014 16:34:36 +0000 (16:34 +0000)]
Also import the DataOutBase::Patch name into DataOutInterface to make MS VC
happy.
Fix a couple of minor editorial warts.
git-svn-id: https://svn.dealii.org/trunk@32217
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bangerth [Wed, 15 Jan 2014 02:51:28 +0000 (02:51 +0000)]
Fully qualify a namespace to make MS VC++ happy.
git-svn-id: https://svn.dealii.org/trunk@32213
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bangerth [Wed, 15 Jan 2014 02:48:08 +0000 (02:48 +0000)]
Use double instead of float in one place to avoid a MS VC++ warning.
git-svn-id: https://svn.dealii.org/trunk@32212
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bangerth [Wed, 15 Jan 2014 02:46:51 +0000 (02:46 +0000)]
Do not name an unused variable.
git-svn-id: https://svn.dealii.org/trunk@32211
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heister [Tue, 14 Jan 2014 18:05:27 +0000 (18:05 +0000)]
make the test fail for real
git-svn-id: https://svn.dealii.org/trunk@32207
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heister [Tue, 14 Jan 2014 18:05:04 +0000 (18:05 +0000)]
add failing test
git-svn-id: https://svn.dealii.org/trunk@32206
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bangerth [Tue, 14 Jan 2014 16:29:20 +0000 (16:29 +0000)]
Prevent MSVC from #defining min and max as macros.
git-svn-id: https://svn.dealii.org/trunk@32205
0785d39b -7218-0410-832d-
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bangerth [Tue, 14 Jan 2014 16:08:14 +0000 (16:08 +0000)]
Avoid invalid cast from one to another DoFHandler type.
git-svn-id: https://svn.dealii.org/trunk@32204
0785d39b -7218-0410-832d-
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bangerth [Mon, 13 Jan 2014 23:31:29 +0000 (23:31 +0000)]
Match names of template arguments. This appears to confuse MSVC otherwise...
git-svn-id: https://svn.dealii.org/trunk@32203
0785d39b -7218-0410-832d-
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heltai [Mon, 13 Jan 2014 16:45:57 +0000 (16:45 +0000)]
Added interpolate instantiation for codimension one.
git-svn-id: https://svn.dealii.org/trunk@32201
0785d39b -7218-0410-832d-
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kanschat [Mon, 13 Jan 2014 12:13:32 +0000 (12:13 +0000)]
add two useful fields
git-svn-id: https://svn.dealii.org/trunk@32199
0785d39b -7218-0410-832d-
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kanschat [Sun, 12 Jan 2014 16:23:52 +0000 (16:23 +0000)]
add remesh event
git-svn-id: https://svn.dealii.org/trunk@32198
0785d39b -7218-0410-832d-
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buerg [Sat, 11 Jan 2014 15:59:02 +0000 (15:59 +0000)]
Revert to r32190.
git-svn-id: https://svn.dealii.org/trunk@32196
0785d39b -7218-0410-832d-
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buerg [Sat, 11 Jan 2014 15:57:13 +0000 (15:57 +0000)]
Revert to r32190.
git-svn-id: https://svn.dealii.org/trunk@32195
0785d39b -7218-0410-832d-
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kanschat [Sat, 11 Jan 2014 15:07:41 +0000 (15:07 +0000)]
avoid deprecated functions
git-svn-id: https://svn.dealii.org/trunk@32194
0785d39b -7218-0410-832d-
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heister [Sat, 11 Jan 2014 01:52:06 +0000 (01:52 +0000)]
fix warning about ambiguous else branch
git-svn-id: https://svn.dealii.org/trunk@32193
0785d39b -7218-0410-832d-
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buerg [Fri, 10 Jan 2014 23:01:52 +0000 (23:01 +0000)]
Restore accidently deleted function.
git-svn-id: https://svn.dealii.org/trunk@32192
0785d39b -7218-0410-832d-
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buerg [Fri, 10 Jan 2014 22:35:44 +0000 (22:35 +0000)]
Compute hessians for FE_Nedelec correctly.
git-svn-id: https://svn.dealii.org/trunk@32191
0785d39b -7218-0410-832d-
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