]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
2 years agoAdd a few missing memory consumption calls/implementations.
David Wells [Mon, 19 Dec 2022 17:41:19 +0000 (12:41 -0500)]
Add a few missing memory consumption calls/implementations.

2 years agoMerge pull request #14585 from tjhei/fix_deprecated_usage_in_tests
David Wells [Mon, 19 Dec 2022 22:07:30 +0000 (17:07 -0500)]
Merge pull request #14585 from tjhei/fix_deprecated_usage_in_tests

Fix deprecated usage in tests

2 years agoavoid deprecated function 14585/head
Timo Heister [Mon, 19 Dec 2022 14:44:47 +0000 (09:44 -0500)]
avoid deprecated function

2 years agoavoid deprecated functions in tests
Timo Heister [Mon, 19 Dec 2022 14:39:07 +0000 (09:39 -0500)]
avoid deprecated functions in tests

fixup

fixup

2 years agoMerge pull request #14584 from and-salmon/step-22-link
Daniel Arndt [Mon, 19 Dec 2022 15:24:53 +0000 (10:24 -0500)]
Merge pull request #14584 from and-salmon/step-22-link

2 years agoUpdate broken link in step-22 intro.dox 14584/head
Andrew Salmon [Mon, 19 Dec 2022 14:34:54 +0000 (09:34 -0500)]
Update broken link in step-22 intro.dox

2 years agoMerge pull request #14539 from drwells/rearrange-mapping-related-data
Daniel Arndt [Mon, 19 Dec 2022 13:40:52 +0000 (08:40 -0500)]
Merge pull request #14539 from drwells/rearrange-mapping-related-data

2 years agoMappingRelatedData: move to separate header and source files. 14539/head
David Wells [Tue, 6 Dec 2022 20:55:04 +0000 (15:55 -0500)]
MappingRelatedData: move to separate header and source files.

2 years agoMappingRelatedData: remove extra dealii:: qualifications.
David Wells [Tue, 6 Dec 2022 20:34:13 +0000 (15:34 -0500)]
MappingRelatedData: remove extra dealii:: qualifications.

2 years agoMerge pull request #14578 from and-salmon/typo-step-18
Daniel Arndt [Fri, 16 Dec 2022 21:02:43 +0000 (16:02 -0500)]
Merge pull request #14578 from and-salmon/typo-step-18

2 years agoCorrect typo in step-18 intro.dox 14578/head
Andrew Salmon [Fri, 16 Dec 2022 17:43:48 +0000 (12:43 -0500)]
Correct typo in step-18 intro.dox

2 years agoMerge pull request #14416 from peterrum/solver_gmres_fix
Daniel Arndt [Thu, 15 Dec 2022 13:28:41 +0000 (08:28 -0500)]
Merge pull request #14416 from peterrum/solver_gmres_fix

2 years agoFix vector access in SolverGMRES 14416/head
Peter Munch [Sat, 12 Nov 2022 15:37:44 +0000 (16:37 +0100)]
Fix vector access in SolverGMRES

2 years agoMerge pull request #14573 from bangerth/vtu-2
David Wells [Wed, 14 Dec 2022 17:04:50 +0000 (12:04 -0500)]
Merge pull request #14573 from bangerth/vtu-2

Simplify data passing to vtk_point_index_from_ijk().

2 years agoMerge pull request #14387 from peterrum/instantiation_helper_run_2
Martin Kronbichler [Wed, 14 Dec 2022 10:05:48 +0000 (11:05 +0100)]
Merge pull request #14387 from peterrum/instantiation_helper_run_2

FEEvaluation: precompile for n_q_points==2*fe_degree

2 years agoMerge pull request #14570 from peterrum/weight_fe_q_dofs_by_entity_shifted
Martin Kronbichler [Wed, 14 Dec 2022 09:47:16 +0000 (10:47 +0100)]
Merge pull request #14570 from peterrum/weight_fe_q_dofs_by_entity_shifted

Add weight_fe_q_dofs_by_entity_shifted() and compute_weights_fe_q_dofs_by_entity_shifted()

2 years agoMerge pull request #14572 from masterleinad/fix_more_array_access_warnings
Wolfgang Bangerth [Wed, 14 Dec 2022 05:15:41 +0000 (22:15 -0700)]
Merge pull request #14572 from masterleinad/fix_more_array_access_warnings

Avoid more compiler warnings about array access

2 years agoMerge pull request #14574 from luca-heltai/petsc-object-reference
Daniel Arndt [Tue, 13 Dec 2022 19:14:37 +0000 (14:14 -0500)]
Merge pull request #14574 from luca-heltai/petsc-object-reference

2 years agoChangelog. 14574/head
Luca Heltai [Tue, 13 Dec 2022 16:37:42 +0000 (17:37 +0100)]
Changelog.

2 years agoPETScWrappers::VectorBase: use PetscObjectReference
Stefano Zampini [Mon, 17 Oct 2022 10:23:18 +0000 (13:23 +0300)]
PETScWrappers::VectorBase: use PetscObjectReference

now the deal object can outlive the Vec

2 years agoRename function arguments. 14573/head
Wolfgang Bangerth [Tue, 13 Dec 2022 05:12:20 +0000 (22:12 -0700)]
Rename function arguments.

2 years agoRename a function.
Wolfgang Bangerth [Tue, 13 Dec 2022 05:09:32 +0000 (22:09 -0700)]
Rename a function.

2 years agoSimplify data passing to vtk_point_index_from_ijk().
Wolfgang Bangerth [Tue, 13 Dec 2022 05:06:02 +0000 (22:06 -0700)]
Simplify data passing to vtk_point_index_from_ijk().

2 years agoAddress warnings about unused variables 14572/head
Daniel Arndt [Mon, 12 Dec 2022 22:33:38 +0000 (17:33 -0500)]
Address warnings about unused variables

2 years agoMerge pull request #14558 from tamiko/cmake_improve_quick_tests
Daniel Arndt [Mon, 12 Dec 2022 22:19:21 +0000 (17:19 -0500)]
Merge pull request #14558 from tamiko/cmake_improve_quick_tests

2 years agoAvoid more compiler warnings about array access
Daniel Arndt [Mon, 12 Dec 2022 20:22:53 +0000 (20:22 +0000)]
Avoid more compiler warnings about array access

2 years agogitattributes: do not filter run_quick_tests.cmake script 14558/head
Matthias Maier [Sat, 10 Dec 2022 08:34:58 +0000 (02:34 -0600)]
gitattributes: do not filter run_quick_tests.cmake script

2 years agoTests: enable run quick tests in run_buildtest.cmake
Matthias Maier [Sat, 10 Dec 2022 08:33:40 +0000 (02:33 -0600)]
Tests: enable run quick tests in run_buildtest.cmake

2 years agoTests: update quick test error message
Matthias Maier [Sat, 10 Dec 2022 07:42:07 +0000 (01:42 -0600)]
Tests: update quick test error message

2 years agoupdate doc/news/changes
Matthias Maier [Sat, 10 Dec 2022 07:15:24 +0000 (01:15 -0600)]
update doc/news/changes

2 years agotests: add a test target that runs the quick tests
Matthias Maier [Sat, 10 Dec 2022 06:38:49 +0000 (00:38 -0600)]
tests: add a test target that runs the quick tests

2 years agoTests: Clean up top level CMakeLists.txt
Matthias Maier [Sat, 10 Dec 2022 06:29:36 +0000 (00:29 -0600)]
Tests: Clean up top level CMakeLists.txt

2 years agoTests: convert quicktests to regular tests
Matthias Maier [Sat, 10 Dec 2022 06:12:41 +0000 (00:12 -0600)]
Tests: convert quicktests to regular tests

2 years agoMerge pull request #14559 from tamiko/testsuite_fixes
Peter Munch [Mon, 12 Dec 2022 19:36:41 +0000 (20:36 +0100)]
Merge pull request #14559 from tamiko/testsuite_fixes

Tests: make mpiexec and numdiff optional

2 years agoMerge pull request #14564 from peterrum/power_of_two
Matthias Maier [Mon, 12 Dec 2022 19:33:07 +0000 (13:33 -0600)]
Merge pull request #14564 from peterrum/power_of_two

Add helper function to indicate power of two

2 years agoMerge pull request #14555 from tjhei/jenkins-remove-old-mpi
Daniel Arndt [Mon, 12 Dec 2022 16:27:12 +0000 (11:27 -0500)]
Merge pull request #14555 from tjhei/jenkins-remove-old-mpi

2 years agoMerge pull request #14549 from adamqc/python-mesh-smoothing
Bruno Turcksin [Mon, 12 Dec 2022 14:19:46 +0000 (09:19 -0500)]
Merge pull request #14549 from adamqc/python-mesh-smoothing

2 years agoAdd weight_fe_q_dofs_by_entity_shifted() and compute_weights_fe_q_dofs_by_entity_shif... 14570/head
Peter Munch [Mon, 12 Dec 2022 12:48:21 +0000 (13:48 +0100)]
Add weight_fe_q_dofs_by_entity_shifted() and compute_weights_fe_q_dofs_by_entity_shifted()

2 years agoMerge pull request #14563 from peterrum/json_docu
David Wells [Sun, 11 Dec 2022 22:29:52 +0000 (17:29 -0500)]
Merge pull request #14563 from peterrum/json_docu

ParameterHandler: add example for json

2 years agoMerge pull request #14565 from peterrum/feeval_fix_assert
Martin Kronbichler [Sun, 11 Dec 2022 21:00:54 +0000 (22:00 +0100)]
Merge pull request #14565 from peterrum/feeval_fix_assert

FEEvaluation: fix assert

2 years agoMerge pull request #14566 from peterrum/convert_hypercube_to_simplex_mesh_rename_tests
David Wells [Sun, 11 Dec 2022 20:38:11 +0000 (15:38 -0500)]
Merge pull request #14566 from peterrum/convert_hypercube_to_simplex_mesh_rename_tests

Rename tests

2 years agoMerge pull request #14560 from peterrum/relax_assert
Matthias Maier [Sun, 11 Dec 2022 18:35:12 +0000 (12:35 -0600)]
Merge pull request #14560 from peterrum/relax_assert

Relax assert

2 years agoCMake: bugfix: do not pass an argument as environemt variable 14559/head
Matthias Maier [Sun, 11 Dec 2022 18:29:38 +0000 (12:29 -0600)]
CMake: bugfix: do not pass an argument as environemt variable

This fixes the runscript invocation on windows configurations

2 years agoRename tests 14566/head
Peter Munch [Sun, 11 Dec 2022 18:16:12 +0000 (19:16 +0100)]
Rename tests

2 years agoFEEvaluation: fix assert 14565/head
Peter Munch [Sun, 11 Dec 2022 16:21:33 +0000 (17:21 +0100)]
FEEvaluation: fix assert

2 years agoAdd helper function to indicate power of two 14564/head
Peter Munch [Sun, 11 Dec 2022 16:04:53 +0000 (17:04 +0100)]
Add helper function to indicate power of two

2 years agoParameterHandler: add example for json 14563/head
Peter Munch [Sun, 11 Dec 2022 15:47:26 +0000 (16:47 +0100)]
ParameterHandler: add example for json

2 years agoRelax assert 14560/head
Peter Munch [Sun, 11 Dec 2022 13:15:52 +0000 (14:15 +0100)]
Relax assert

2 years agoTests: Use find_package(UnixCommands) to detect a suitable shell
Matthias Maier [Sun, 11 Dec 2022 06:55:03 +0000 (00:55 -0600)]
Tests: Use find_package(UnixCommands) to detect a suitable shell

2 years agoTests: make mpiexec and numdiff optional
Matthias Maier [Sun, 11 Dec 2022 06:07:52 +0000 (00:07 -0600)]
Tests: make mpiexec and numdiff optional

Making numdiff (and mpiexec) optional has a number of advantages:

 - First of all, we can call deal_ii_pickup_tests() in user projects
   unconditionally. Previously, it was always necessary to add some
   CMake code to only call the macro if numdiff was available. Or,
   otherwise to frustrate everyone who just wants to configure and
   compile your project and doesn't happen to have numdiff installed.

 - This refactoring will allow us to simply call deal_ii_pickup_tests()
   for configuring out quick tests.

2 years agoCMake: move a macro definition to the proper file
Matthias Maier [Sun, 11 Dec 2022 06:07:33 +0000 (00:07 -0600)]
CMake: move a macro definition to the proper file

2 years agoMerge pull request #14556 from bangerth/vtu-1
Matthias Maier [Sun, 11 Dec 2022 02:55:40 +0000 (20:55 -0600)]
Merge pull request #14556 from bangerth/vtu-1

Replace one more occurrence of dim-predicated loops.

2 years agoMerge pull request #14321 from peterrum/rotate
Peter Munch [Sat, 10 Dec 2022 08:51:53 +0000 (09:51 +0100)]
Merge pull request #14321 from peterrum/rotate

Rotate for dim=1 spacedim=2

2 years agoMerge pull request #14331 from peterrum/fdm_compression_ad
Peter Munch [Sat, 10 Dec 2022 08:23:47 +0000 (09:23 +0100)]
Merge pull request #14331 from peterrum/fdm_compression_ad

TensorProductMatrixSymmetricSumCollection: allow to disable compression

2 years agoTensorProductMatrixSymmetricSumCollection: allow to disable compression 14331/head
Peter Munch [Sun, 2 Oct 2022 14:38:59 +0000 (16:38 +0200)]
TensorProductMatrixSymmetricSumCollection: allow to disable compression

2 years agoMerge pull request #14520 from masterleinad/add_mold_linker
Matthias Maier [Sat, 10 Dec 2022 03:44:19 +0000 (21:44 -0600)]
Merge pull request #14520 from masterleinad/add_mold_linker

Add support for the mold linker

2 years agoRemove a function argument. 14556/head
Wolfgang Bangerth [Sat, 10 Dec 2022 03:43:36 +0000 (20:43 -0700)]
Remove a function argument.

2 years agoAdd get/set_mesh_smoothing to python bindings. 14549/head
Ce Qin [Thu, 8 Dec 2022 15:35:00 +0000 (23:35 +0800)]
Add get/set_mesh_smoothing to python bindings.

2 years agoReplace one more occurrence of dim-predicated loops.
Wolfgang Bangerth [Sat, 10 Dec 2022 02:36:45 +0000 (19:36 -0700)]
Replace one more occurrence of dim-predicated loops.

2 years agoCI: disable old MPI build 14555/head
Timo Heister [Fri, 9 Dec 2022 21:40:48 +0000 (16:40 -0500)]
CI: disable old MPI build

Now that the new MPI build is working, delete the old one.

2 years agoMerge pull request #14552 from peterrum/cgs_log
David Wells [Fri, 9 Dec 2022 17:20:32 +0000 (12:20 -0500)]
Merge pull request #14552 from peterrum/cgs_log

Modified Gram-Schmidt: add docu

2 years agoMerge pull request #14550 from tamiko/fix_gmsh_configure
David Wells [Fri, 9 Dec 2022 17:05:16 +0000 (12:05 -0500)]
Merge pull request #14550 from tamiko/fix_gmsh_configure

CMake: Bugfix: only export DEAL_II_GMSH_WITH_API if gmsh is configured

2 years agoTry using mold in github actions 14520/head
Daniel Arndt [Fri, 9 Dec 2022 17:02:24 +0000 (12:02 -0500)]
Try using mold in github actions

2 years agoModified Gram-Schmidt: add docu 14552/head
Peter Munch [Thu, 8 Dec 2022 18:16:23 +0000 (19:16 +0100)]
Modified Gram-Schmidt: add docu

2 years agoMerge pull request #14546 from drwells/step-70-no-boost
Matthias Maier [Fri, 9 Dec 2022 00:09:47 +0000 (18:09 -0600)]
Merge pull request #14546 from drwells/step-70-no-boost

step-70: remove a dependency on boost.

2 years agoMerge pull request #14543 from masterleinad/fix_undefned_var_template
Wolfgang Bangerth [Thu, 8 Dec 2022 21:39:25 +0000 (14:39 -0700)]
Merge pull request #14543 from masterleinad/fix_undefned_var_template

Address Wundefined-var-template

2 years agoRotate for dim=1 spacedim=2 14321/head
Peter Munch [Wed, 28 Sep 2022 13:45:47 +0000 (15:45 +0200)]
Rotate for dim=1 spacedim=2

2 years agoMerge pull request #14417 from peterrum/cheby_forth_kind
Peter Munch [Thu, 8 Dec 2022 21:02:19 +0000 (22:02 +0100)]
Merge pull request #14417 from peterrum/cheby_forth_kind

Introduce 4th-kind Chebyshev preconditioner

2 years agoMerge pull request #14548 from masterleinad/fix_indent_jenkins
Timo Heister [Thu, 8 Dec 2022 20:58:52 +0000 (15:58 -0500)]
Merge pull request #14548 from masterleinad/fix_indent_jenkins

Fix indentation in Jenkinsfile.mpi

2 years agoFEEvaluation: precompile for n_q_points==2*fe_degree 14387/head
Peter Munch [Wed, 2 Nov 2022 19:26:52 +0000 (20:26 +0100)]
FEEvaluation: precompile for n_q_points==2*fe_degree

2 years agoCMake: Bugfix: only export DEAL_II_GMSH_WITH_API if gmsh is configured 14550/head
Matthias Maier [Thu, 8 Dec 2022 01:25:46 +0000 (19:25 -0600)]
CMake: Bugfix: only export DEAL_II_GMSH_WITH_API if gmsh is configured

If the gmsh library is installed but the gmsh executable is missing we
currently disable gmsh support. This implies that we will not link
against the gmsh library.

Unfortunately, on first configure pass the variable `GMSH_WITH_API` is
still populated with a `TRUE` value and the `DEAL_II_GMSH_WITH_API`
variable gets set by accident and final linkage fails.

This issue is hard to spot because a second invocation of cmake will
cure the configure mistake (and the debian/ubuntu packages do not run
any autodetection).

2 years agoFix indentation in Jenkinsfile.mpi 14548/head
Daniel Arndt [Thu, 8 Dec 2022 15:56:43 +0000 (10:56 -0500)]
Fix indentation in Jenkinsfile.mpi

2 years agoMerge pull request #14542 from tjhei/jenkins-mpi
Daniel Arndt [Thu, 8 Dec 2022 15:49:58 +0000 (10:49 -0500)]
Merge pull request #14542 from tjhei/jenkins-mpi

2 years agoIntroduce 4th-kind Chebyshev preconditioner 14417/head
Peter Munch [Sat, 29 Oct 2022 11:27:27 +0000 (13:27 +0200)]
Introduce 4th-kind Chebyshev preconditioner

2 years agostep-70: remove a dependency on boost. 14546/head
David Wells [Thu, 8 Dec 2022 15:09:03 +0000 (10:09 -0500)]
step-70: remove a dependency on boost.

2 years agoindent 14542/head
Timo Heister [Thu, 8 Dec 2022 00:14:05 +0000 (19:14 -0500)]
indent

2 years agoMerge pull request #14541 from masterleinad/fix_deprecations
David Wells [Wed, 7 Dec 2022 23:29:14 +0000 (18:29 -0500)]
Merge pull request #14541 from masterleinad/fix_deprecations

Fix some deprecations

2 years agoAddress Wundefined-var-template 14543/head
Daniel Arndt [Wed, 7 Dec 2022 21:30:20 +0000 (16:30 -0500)]
Address Wundefined-var-template

2 years ago[CI] add new MPI Jenkinsfile
Timo Heister [Tue, 6 Dec 2022 19:41:55 +0000 (14:41 -0500)]
[CI] add new MPI Jenkinsfile

This enables a new Jenkins project on a new server,
https://ci.tjhei.info to run the tests with MPI enabled.

a

2 years agoFix some deprecations 14541/head
Daniel Arndt [Wed, 7 Dec 2022 15:57:44 +0000 (15:57 +0000)]
Fix some deprecations

2 years agoMerge pull request #14540 from tamiko/use_pthread_flag
Timo Heister [Wed, 7 Dec 2022 12:54:12 +0000 (07:54 -0500)]
Merge pull request #14540 from tamiko/use_pthread_flag

CMake: Ensure we use "-pthread" instead of "-lpthread" for thread support

2 years agoCMake: Ensure we use "-pthread" instead of "-lpthread" for thread support 14540/head
Matthias Maier [Wed, 7 Dec 2022 00:45:53 +0000 (18:45 -0600)]
CMake: Ensure we use "-pthread" instead of "-lpthread" for thread support

2 years agoMerge pull request #14538 from luca-heltai/changelog-zampini
David Wells [Wed, 7 Dec 2022 02:36:10 +0000 (21:36 -0500)]
Merge pull request #14538 from luca-heltai/changelog-zampini

Added changelog for #14531

2 years agoAdded changelog. 14538/head
Luca Heltai [Tue, 6 Dec 2022 18:19:59 +0000 (19:19 +0100)]
Added changelog.

2 years agoMerge pull request #14535 from mschreter/mca_1d_remove_saddle_point
Peter Munch [Tue, 6 Dec 2022 19:55:01 +0000 (20:55 +0100)]
Merge pull request #14535 from mschreter/mca_1d_remove_saddle_point

MarchingCubeAlgorithm<1>: Remove determination of a saddle point

2 years agoMerge pull request #14531 from tjhei/step-77-fix
Daniel Arndt [Tue, 6 Dec 2022 19:26:52 +0000 (14:26 -0500)]
Merge pull request #14531 from tjhei/step-77-fix

2 years agoMerge pull request #14528 from tamiko/cmake_cleanup_3
Daniel Arndt [Tue, 6 Dec 2022 14:06:00 +0000 (09:06 -0500)]
Merge pull request #14528 from tamiko/cmake_cleanup_3

2 years agoMerge pull request #14533 from vovannikov/solver_control_history
Timo Heister [Mon, 5 Dec 2022 22:59:12 +0000 (17:59 -0500)]
Merge pull request #14533 from vovannikov/solver_control_history

Solver control history

2 years agoremove saddle point 14535/head
Magdalena Schreter [Mon, 5 Dec 2022 21:24:39 +0000 (22:24 +0100)]
remove saddle point

2 years agoMerge pull request #14534 from masterleinad/clang_no_trivial_copy
Daniel Arndt [Mon, 5 Dec 2022 22:02:10 +0000 (17:02 -0500)]
Merge pull request #14534 from masterleinad/clang_no_trivial_copy

2 years agoDon't use __has_trivial_copy 14534/head
Daniel Arndt [Mon, 5 Dec 2022 19:29:10 +0000 (14:29 -0500)]
Don't use __has_trivial_copy

2 years agoAdd change-log entry 14533/head
Vladimir Ivannikov [Mon, 5 Dec 2022 15:08:02 +0000 (16:08 +0100)]
Add change-log entry

2 years agoUpdate test
Vladimir Ivannikov [Mon, 5 Dec 2022 10:20:44 +0000 (11:20 +0100)]
Update test

2 years agoClear history for a new step
Vladimir Ivannikov [Mon, 5 Dec 2022 10:20:26 +0000 (11:20 +0100)]
Clear history for a new step

2 years agoMerge pull request #14532 from bangerth/50
Timo Heister [Mon, 5 Dec 2022 01:05:28 +0000 (20:05 -0500)]
Merge pull request #14532 from bangerth/50

Remove a 'using' declaration in step-50 that is in the way.

2 years agoupdate test results 14531/head
Timo Heister [Mon, 5 Dec 2022 00:40:27 +0000 (00:40 +0000)]
update test results

2 years agoRemove a 'using' declaration in step-50 that is in the way. 14532/head
Wolfgang Bangerth [Sat, 3 Dec 2022 20:34:15 +0000 (13:34 -0700)]
Remove a 'using' declaration in step-50 that is in the way.

2 years agoMerge pull request #14524 from bangerth/d2
Timo Heister [Sun, 4 Dec 2022 14:46:48 +0000 (09:46 -0500)]
Merge pull request #14524 from bangerth/d2

Avoid using dealii:: qualified names.

2 years agoMerge pull request #14529 from drwells/step-70-include
Matthias Maier [Sat, 3 Dec 2022 23:07:05 +0000 (17:07 -0600)]
Merge pull request #14529 from drwells/step-70-include

Fix compilation of step-70.

2 years agoAvoid using dealii:: qualified names. 14524/head
Wolfgang Bangerth [Fri, 2 Dec 2022 22:52:48 +0000 (15:52 -0700)]
Avoid using dealii:: qualified names.


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