]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
4 years agoAdded possibility to attach data to bounding boxes. 10282/head
Luca Heltai [Wed, 27 May 2020 12:57:40 +0000 (14:57 +0200)]
Added possibility to attach data to bounding boxes.

4 years agoBoundingBoxDataOut.
Luca Heltai [Thu, 21 May 2020 22:04:14 +0000 (00:04 +0200)]
BoundingBoxDataOut.

4 years agoMerge pull request #10275 from bangerth/70
Martin Kronbichler [Tue, 19 May 2020 18:01:06 +0000 (20:01 +0200)]
Merge pull request #10275 from bangerth/70

More updates to step-70

4 years agoMerge pull request #10272 from tjhei/step-70-unused-variable
Matthias Maier [Tue, 19 May 2020 16:30:24 +0000 (11:30 -0500)]
Merge pull request #10272 from tjhei/step-70-unused-variable

step-70: remove unused variable

4 years agoMerge pull request #10271 from tjhei/step-70-fix-petsc
David Wells [Tue, 19 May 2020 15:39:07 +0000 (11:39 -0400)]
Merge pull request #10271 from tjhei/step-70-fix-petsc

step-70: add missing compress() call

4 years agoMerge pull request #10269 from tjhei/step-70-petsc-fix
Daniel Arndt [Tue, 19 May 2020 15:29:59 +0000 (11:29 -0400)]
Merge pull request #10269 from tjhei/step-70-petsc-fix

4 years agoRename a variable in step-70 to better match its intent. 10275/head
Wolfgang Bangerth [Tue, 19 May 2020 14:57:42 +0000 (08:57 -0600)]
Rename a variable in step-70 to better match its intent.

4 years agoLeave more references to step-70.
Wolfgang Bangerth [Tue, 19 May 2020 14:44:06 +0000 (08:44 -0600)]
Leave more references to step-70.

4 years agostep-70: remove unused variable 10272/head
Timo Heister [Tue, 19 May 2020 13:48:58 +0000 (09:48 -0400)]
step-70: remove unused variable

4 years agostep-70: add missing compress() call 10271/head
Timo Heister [Tue, 19 May 2020 13:45:35 +0000 (09:45 -0400)]
step-70: add missing compress() call

fixes #10270

4 years agofix PETSc step-70 compilation 10269/head
Timo Heister [Tue, 19 May 2020 13:36:41 +0000 (09:36 -0400)]
fix PETSc step-70 compilation

candidate for 9.2

4 years agoMerge pull request #10266 from masterleinad/fix_python_test
Matthias Maier [Tue, 19 May 2020 07:19:21 +0000 (02:19 -0500)]
Merge pull request #10266 from masterleinad/fix_python_test

Fix python test with input file

4 years agoFix python test with input file 10266/head
Daniel Arndt [Tue, 19 May 2020 03:58:52 +0000 (23:58 -0400)]
Fix python test with input file

4 years agoMerge pull request #10257 from tamiko/fix_a_test_2
Matthias Maier [Tue, 19 May 2020 01:18:58 +0000 (20:18 -0500)]
Merge pull request #10257 from tamiko/fix_a_test_2

sacado/helper_scalar_coupled_3_components_01_4: avoid race condition

4 years agoMerge pull request #10259 from bangerth/70
Matthias Maier [Tue, 19 May 2020 01:17:40 +0000 (20:17 -0500)]
Merge pull request #10259 from bangerth/70

Edits for step-70.cc

4 years agoMake a function simpler to read. 10259/head
Wolfgang Bangerth [Tue, 19 May 2020 00:20:54 +0000 (18:20 -0600)]
Make a function simpler to read.

4 years agoMove a function.
Wolfgang Bangerth [Tue, 19 May 2020 00:19:23 +0000 (18:19 -0600)]
Move a function.

4 years agoUpdate documentation inside the step-70.cc file.
Wolfgang Bangerth [Tue, 19 May 2020 00:16:55 +0000 (18:16 -0600)]
Update documentation inside the step-70.cc file.

4 years agoSimplify some code.
Wolfgang Bangerth [Tue, 19 May 2020 00:12:20 +0000 (18:12 -0600)]
Simplify some code.

4 years agoRename the penalty parameter.
Wolfgang Bangerth [Mon, 18 May 2020 23:54:37 +0000 (17:54 -0600)]
Rename the penalty parameter.

4 years agoMove a piece of code to a better location.
Wolfgang Bangerth [Mon, 18 May 2020 23:50:07 +0000 (17:50 -0600)]
Move a piece of code to a better location.

4 years agoUse mpi_communicator instead of MPI_COMM_WORLD.
Wolfgang Bangerth [Mon, 18 May 2020 23:19:05 +0000 (17:19 -0600)]
Use mpi_communicator instead of MPI_COMM_WORLD.

4 years agoSimplify more pieces of code.
Wolfgang Bangerth [Mon, 18 May 2020 23:42:13 +0000 (17:42 -0600)]
Simplify more pieces of code.

4 years agoSimplify a piece of code.
Wolfgang Bangerth [Mon, 18 May 2020 23:07:41 +0000 (17:07 -0600)]
Simplify a piece of code.

4 years agoAdd a reference to step-70.
Wolfgang Bangerth [Mon, 18 May 2020 23:06:31 +0000 (17:06 -0600)]
Add a reference to step-70.

4 years agoMerge pull request #10256 from tamiko/fix_a_test
Daniel Arndt [Mon, 18 May 2020 20:45:08 +0000 (16:45 -0400)]
Merge pull request #10256 from tamiko/fix_a_test

4 years agoEdits to the in-code documentation of step-70.
Wolfgang Bangerth [Mon, 18 May 2020 16:35:02 +0000 (10:35 -0600)]
Edits to the in-code documentation of step-70.

4 years agoMerge pull request #10258 from masterleinad/fix_some_tests_lapack_werror
Daniel Arndt [Mon, 18 May 2020 19:08:56 +0000 (15:08 -0400)]
Merge pull request #10258 from masterleinad/fix_some_tests_lapack_werror

4 years agoFix doxygen issue.
Wolfgang Bangerth [Sat, 16 May 2020 18:33:46 +0000 (12:33 -0600)]
Fix doxygen issue.

Make it clear to doxygen that "2018." at the beginning of a line is
not an attempt to create a numbered list...

4 years agoFix some tests failing without LAPAPCK support and with -Werror 10258/head
Daniel Arndt [Mon, 18 May 2020 13:51:38 +0000 (13:51 +0000)]
Fix some tests failing without LAPAPCK support and with -Werror

4 years agosacado/helper_scalar_coupled_3_components_01_4: avoid race condition 10257/head
Matthias Maier [Mon, 18 May 2020 14:21:16 +0000 (09:21 -0500)]
sacado/helper_scalar_coupled_3_components_01_4: avoid race condition

4 years agoarpack/step-36_ar_with_iterations: Remove iteration count 10256/head
Matthias Maier [Mon, 18 May 2020 14:19:28 +0000 (09:19 -0500)]
arpack/step-36_ar_with_iterations: Remove iteration count

4 years agoMerge pull request #10249 from tamiko/fix_complex_number_product_type
David Wells [Sat, 16 May 2020 21:23:39 +0000 (17:23 -0400)]
Merge pull request #10249 from tamiko/fix_complex_number_product_type

Workaround: Add additional complex ProductTypeImpl specializations

4 years agomark code snippet as workaround slated for removal 10249/head
Matthias Maier [Sat, 16 May 2020 18:15:10 +0000 (13:15 -0500)]
mark code snippet as workaround slated for removal

4 years agoimprove test and add symmetric variant as well
Matthias Maier [Sat, 16 May 2020 18:06:28 +0000 (13:06 -0500)]
improve test and add symmetric variant as well

4 years agoadd a test
Matthias Maier [Sat, 16 May 2020 18:03:04 +0000 (13:03 -0500)]
add a test

4 years agoMerge pull request #10244 from bangerth/70
Matthias Maier [Sat, 16 May 2020 17:36:11 +0000 (12:36 -0500)]
Merge pull request #10244 from bangerth/70

Edits to introduction and results section of step-70

4 years agoWorkaround: Add additional complex ProductTypeImpl specializations
Matthias Maier [Sat, 16 May 2020 16:59:00 +0000 (11:59 -0500)]
Workaround: Add additional complex ProductTypeImpl specializations

The workaround introduced in 32ecab6 needs an additional variant to
deduce the product type of Tensor<..., complex<Number>> and
complex<Number> correctly.

Co-authored-by: Daniel Arndt <arndtd@ornl.gov>
4 years agoEdits to the results section of step-70. 10244/head
Wolfgang Bangerth [Fri, 15 May 2020 23:13:26 +0000 (17:13 -0600)]
Edits to the results section of step-70.

4 years agoMinor edits to the introduction of step-70.
Wolfgang Bangerth [Fri, 15 May 2020 19:27:15 +0000 (13:27 -0600)]
Minor edits to the introduction of step-70.

4 years agoMerge pull request #10228 from peterrum/step70-fixwarning
Daniel Arndt [Sat, 16 May 2020 04:20:59 +0000 (00:20 -0400)]
Merge pull request #10228 from peterrum/step70-fixwarning

4 years agoMerge pull request #10235 from drwells/fix-bbox-0
Daniel Arndt [Sat, 16 May 2020 03:24:23 +0000 (23:24 -0400)]
Merge pull request #10235 from drwells/fix-bbox-0

4 years agoMerge pull request #10245 from tjhei/update-copyright-act-3
Wolfgang Bangerth [Sat, 16 May 2020 03:09:08 +0000 (05:09 +0200)]
Merge pull request #10245 from tjhei/update-copyright-act-3

update copyright years

4 years agoMerge pull request #10241 from tjhei/copyright-script-go-deeper
Wolfgang Bangerth [Sat, 16 May 2020 03:07:35 +0000 (05:07 +0200)]
Merge pull request #10241 from tjhei/copyright-script-go-deeper

fix update-copyright not going 2 levels deep into src/include

4 years agoupdate copyright years 10245/head
Timo Heister [Fri, 15 May 2020 22:54:34 +0000 (18:54 -0400)]
update copyright years

with fixed script from #10241 and after a lot of other changes came in.

4 years agoMerge pull request #10242 from marcfehling/fix-copyright
Timo Heister [Sat, 16 May 2020 01:15:21 +0000 (21:15 -0400)]
Merge pull request #10242 from marcfehling/fix-copyright

Fixed a few copyright years manually.

4 years agoextend update-copyright script (missing files) 10241/head
Timo Heister [Fri, 15 May 2020 22:46:50 +0000 (18:46 -0400)]
extend update-copyright script (missing files)

- fix not going 2 levels deep into src/include, reported in #10240
- add .cu files

4 years agoFixed even more copyright years manually. 10242/head
Marc Fehling [Fri, 15 May 2020 22:55:49 +0000 (00:55 +0200)]
Fixed even more copyright years manually.

4 years agoFixed a few copyright years manually.
Marc Fehling [Fri, 15 May 2020 22:42:25 +0000 (00:42 +0200)]
Fixed a few copyright years manually.

4 years agoMerge pull request #10236 from drwells/step-70-make-unique
Daniel Arndt [Fri, 15 May 2020 21:23:05 +0000 (17:23 -0400)]
Merge pull request #10236 from drwells/step-70-make-unique

4 years agoFix warning in step70 10228/head
Peter Munch [Fri, 15 May 2020 14:11:41 +0000 (16:11 +0200)]
Fix warning in step70

4 years agoSpecialize BoundingBox<0> to prevent instantiating BoundingBox<-1>. 10235/head
David Wells [Fri, 15 May 2020 21:11:33 +0000 (17:11 -0400)]
Specialize BoundingBox<0> to prevent instantiating BoundingBox<-1>.

A zero-dimensional bounding box doesn't make sense and causes weird problems
with intel's compiler when the compiler tries to instantiate
BoundingBox::cross_section().

We have to use this workaround and not something like

    BoundingBox<spacedim != 1 ? spacedim - 1 : 1, Number>
    cross_section(const unsigned int direction) const;

to make MSVC happy.

4 years agoMerge pull request #10230 from tamiko/adjust_test_output_2
Martin Kronbichler [Fri, 15 May 2020 19:38:50 +0000 (21:38 +0200)]
Merge pull request #10230 from tamiko/adjust_test_output_2

Test boost/extract_rep*_02: adjust test output for libc++

4 years agoAdd a reference for step-70.
Wolfgang Bangerth [Fri, 15 May 2020 17:02:42 +0000 (11:02 -0600)]
Add a reference for step-70.

4 years agoRe-classify step-70 as a fluids dynamics tutorial.
Wolfgang Bangerth [Fri, 15 May 2020 16:32:06 +0000 (10:32 -0600)]
Re-classify step-70 as a fluids dynamics tutorial.

4 years agoFix a formatting problem with step-60.
Wolfgang Bangerth [Fri, 15 May 2020 16:23:36 +0000 (10:23 -0600)]
Fix a formatting problem with step-60.

Specifically, if doxygen sees the end of a list, it sometimes gets confused and indents
the next line of text as well. That's annoying if the next line of text is the first line
of the commented program (or, more specifically, the heading for the commented program).

4 years agoMerge pull request #10237 from drwells/step-70-spelling
Wolfgang Bangerth [Fri, 15 May 2020 19:28:35 +0000 (21:28 +0200)]
Merge pull request #10237 from drwells/step-70-spelling

Improve spelling in step-70.

4 years agoImprove spelling in step-70. 10237/head
David Wells [Fri, 15 May 2020 17:47:50 +0000 (13:47 -0400)]
Improve spelling in step-70.

4 years agoUse std_cxx14::make_unique in step-70. 10236/head
David Wells [Fri, 15 May 2020 17:38:40 +0000 (13:38 -0400)]
Use std_cxx14::make_unique in step-70.

4 years agoMerge pull request #10232 from luca-heltai/fix-doi-step-70
Wolfgang Bangerth [Fri, 15 May 2020 15:54:32 +0000 (17:54 +0200)]
Merge pull request #10232 from luca-heltai/fix-doi-step-70

Updated doi.

4 years agoUpdated doi. 10232/head
Luca Heltai [Fri, 15 May 2020 15:19:21 +0000 (17:19 +0200)]
Updated doi.

4 years agoTest boost/extract_rep*_02: adjust test output for libc++ 10230/head
Matthias Maier [Fri, 15 May 2020 14:59:39 +0000 (09:59 -0500)]
Test boost/extract_rep*_02: adjust test output for libc++

We have to adjust the output after
bfe81e2b89a39792ee48dd7d028e8860cc44551e also for the libc++ variant.

See 9038e6000b681910227e24302e964835a344ddf8

For reference, the difference between libstdc++ and libc++ output is as
follows:
```
--- extract_representative_set_02.with_p4est=true.mpirun=3.output       2020-05-15 09:27:53.256578723 -0500
+++ extract_representative_set_02.with_p4est=true.mpirun=3.output.libstdc++     2020-05-15 09:58:47.149994734 -0500
@@ -137,16 +137,16 @@
 0.5 -0.707107

 DEAL:1::-0.0732233 -0.0732233
-0.21967 -0.0732233
-0.21967 0.292893
+0.292893 -0.0732233
+0.292893 0.292893
 -0.0732233 0.292893
 -0.0732233 -0.0732233

-DEAL:1::0.21967 -1.11022e-16
-1 -1.11022e-16
+DEAL:1::0.21967 -0.0732233
+1 -0.0732233
 1 0.382683
 0.21967 0.382683
-0.21967 -1.11022e-16
+0.21967 -0.0732233
```

4 years agoMerge pull request #10227 from kronbichler/warning_step-70
Matthias Maier [Fri, 15 May 2020 14:29:38 +0000 (09:29 -0500)]
Merge pull request #10227 from kronbichler/warning_step-70

Fix warning in step-70

4 years agoFix warning in step-70 10227/head
Martin Kronbichler [Fri, 15 May 2020 10:32:16 +0000 (12:32 +0200)]
Fix warning in step-70

4 years agoMerge pull request #10225 from kronbichler/adjust_test_output
Matthias Maier [Fri, 15 May 2020 06:23:11 +0000 (01:23 -0500)]
Merge pull request #10225 from kronbichler/adjust_test_output

Fix test output forgotten in #9969

4 years agoFix test output forgotten in #9969 10225/head
Martin Kronbichler [Fri, 15 May 2020 06:12:34 +0000 (08:12 +0200)]
Fix test output forgotten in #9969

4 years agoMerge pull request #9078 from luca-heltai/step-70
Martin Kronbichler [Fri, 15 May 2020 05:58:33 +0000 (07:58 +0200)]
Merge pull request #9078 from luca-heltai/step-70

Step 70

4 years agoMerge pull request #10174 from luca-heltai/fix-find-cell-around-point
Martin Kronbichler [Fri, 15 May 2020 05:57:32 +0000 (07:57 +0200)]
Merge pull request #10174 from luca-heltai/fix-find-cell-around-point

Fix find active cell around point.

4 years agoMerge pull request #10220 from tjhei/test_parameter_handler_additional_file
Matthias Maier [Fri, 15 May 2020 05:57:19 +0000 (00:57 -0500)]
Merge pull request #10220 from tjhei/test_parameter_handler_additional_file

tests: add additional output file for intel

4 years agoMerge pull request #9969 from marcfehling/binary-search
Martin Kronbichler [Fri, 15 May 2020 05:53:46 +0000 (07:53 +0200)]
Merge pull request #9969 from marcfehling/binary-search

Revisited binary search for parallel::distributed::GridRefinement.

4 years agoMerge pull request #10215 from marcfehling/fix_10211
Martin Kronbichler [Fri, 15 May 2020 05:00:03 +0000 (07:00 +0200)]
Merge pull request #10215 from marcfehling/fix_10211

Bugfix: Cells may not receive any variable size data.

4 years agotests: add additional output file for intel 10220/head
Timo Heister [Fri, 15 May 2020 02:03:25 +0000 (22:03 -0400)]
tests: add additional output file for intel

4 years agoMerge pull request #10198 from bangerth/50
Matthias Maier [Fri, 15 May 2020 00:16:11 +0000 (19:16 -0500)]
Merge pull request #10198 from bangerth/50

Updates to step-50

4 years agoBugfix: Cells may not receive any variable size data. 10215/head
Marc Fehling [Thu, 14 May 2020 22:25:31 +0000 (00:25 +0200)]
Bugfix: Cells may not receive any variable size data.

4 years agoReview by Marc. 9078/head
Luca Heltai [Thu, 14 May 2020 23:45:24 +0000 (01:45 +0200)]
Review by Marc.

4 years agoFixed parameters_23.prm
Luca Heltai [Thu, 14 May 2020 23:12:47 +0000 (01:12 +0200)]
Fixed parameters_23.prm

4 years agoFixed indent.
Luca Heltai [Thu, 14 May 2020 22:28:21 +0000 (00:28 +0200)]
Fixed indent.

4 years agoSome minor changes. Add support for output directory.
Luca Heltai [Tue, 12 May 2020 22:31:42 +0000 (00:31 +0200)]
Some minor changes. Add support for output directory.

4 years ago- Changed the default values for the parameters for the 2D case. The default case...
blaisb [Tue, 12 May 2020 02:55:50 +0000 (22:55 -0400)]
- Changed the default values for the parameters for the 2D case. The default case should run easily and produce better results
- Finalized resulted for the 2D case
- Minor modifications to introduction

4 years ago- Fixed indentation
blaisb [Mon, 11 May 2020 15:58:59 +0000 (11:58 -0400)]
- Fixed indentation
- Corrected small typos /sentences in introduction
- Removed the automatic deletion of .vtk files for step-70

4 years agoFirst draft of results
Luca Heltai [Mon, 11 May 2020 10:55:42 +0000 (12:55 +0200)]
First draft of results

4 years agoFixed indent.
Luca Heltai [Mon, 11 May 2020 00:30:42 +0000 (02:30 +0200)]
Fixed indent.

4 years agoWorking 3d.
Luca Heltai [Sun, 10 May 2020 23:54:35 +0000 (01:54 +0200)]
Working 3d.

4 years agoSwitched to FGMRES.
Luca Heltai [Sun, 10 May 2020 12:04:08 +0000 (14:04 +0200)]
Switched to FGMRES.

4 years agoFixed small issues.
Luca Heltai [Sun, 10 May 2020 10:48:46 +0000 (12:48 +0200)]
Fixed small issues.

4 years agoFix more typos and add a paragraph about particles
Rene Gassmoeller [Sun, 10 May 2020 00:02:17 +0000 (17:02 -0700)]
Fix more typos and add a paragraph about particles

4 years agoFix some typos
Rene Gassmoeller [Sat, 9 May 2020 23:14:21 +0000 (16:14 -0700)]
Fix some typos

4 years agoAddresses all of the corrections and comments of @peterrum
blaisb [Thu, 7 May 2020 02:16:00 +0000 (22:16 -0400)]
Addresses all of the corrections and comments of @peterrum
Introduction and documentation can still be improved.

4 years agoFixed codimension one build.
Luca Heltai [Sat, 2 May 2020 21:31:06 +0000 (23:31 +0200)]
Fixed codimension one build.

4 years agoShort fix to documentation
blaisb [Sat, 2 May 2020 06:07:31 +0000 (02:07 -0400)]
Short fix to documentation

4 years ago- Corrected typos and mistakes
blaisb [Sat, 2 May 2020 05:58:26 +0000 (01:58 -0400)]
- Corrected typos and mistakes
- Finished first pass at documenting step-70
- Changed the default parameter of nitsche penalization to ensure convergence of iterative solver in parallel
- Changed the function driving the motion of the impeller to ensure it comes back at it's original place in then end

4 years agoSome more docs.
Luca Heltai [Fri, 1 May 2020 23:03:03 +0000 (01:03 +0200)]
Some more docs.

4 years agoAllow filenames and cad files.
Luca Heltai [Fri, 1 May 2020 14:58:48 +0000 (16:58 +0200)]
Allow filenames and cad files.

4 years agoTrailing space.
Luca Heltai [Fri, 1 May 2020 13:12:33 +0000 (15:12 +0200)]
Trailing space.

4 years agoMore docs.
Luca Heltai [Fri, 1 May 2020 10:47:20 +0000 (12:47 +0200)]
More docs.

4 years agoFixed typos and small formulas error in the introduction
blaisb [Fri, 1 May 2020 03:05:55 +0000 (23:05 -0400)]
Fixed typos and small formulas error in the introduction

4 years agoRevised and corrected intro.dox
Luca Heltai [Thu, 30 Apr 2020 21:48:33 +0000 (23:48 +0200)]
Revised and corrected intro.dox

4 years agoAdded description of step-70 in top level directory.
Luca Heltai [Thu, 30 Apr 2020 19:33:11 +0000 (21:33 +0200)]
Added description of step-70 in top level directory.

4 years agoAdd implementation of Nitsche for co-dim one
Luca Heltai [Thu, 30 Apr 2020 18:03:55 +0000 (20:03 +0200)]
Add implementation of Nitsche for co-dim one

4 years ago- Fixed a lot of mistakes in equations that prevented rendering
blaisb [Thu, 30 Apr 2020 17:11:06 +0000 (13:11 -0400)]
- Fixed a lot of mistakes in equations that prevented rendering
- Fixed a few spelling mistakes
- Fixed formulation of the weak form for the Nitsche method


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