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bangerth [Tue, 29 Oct 2013 02:23:35 +0000 (02:23 +0000)]

We know how many elements we need.

git-svn-id: https://svn.dealii.org/trunk@31477 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Mon, 28 Oct 2013 21:52:33 +0000 (21:52 +0000)]

Use WorkStream in estimate in step-9.

git-svn-id: https://svn.dealii.org/trunk@31476 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 28 Oct 2013 21:11:38 +0000 (21:11 +0000)]

add to docu

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heister [Mon, 28 Oct 2013 21:09:36 +0000 (21:09 +0000)]

adjust newlines in comment lines

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heister [Mon, 28 Oct 2013 21:06:47 +0000 (21:06 +0000)]

fix DerivativeApproximation in parallel

git-svn-id: https://svn.dealii.org/trunk@31473 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 28 Oct 2013 21:05:41 +0000 (21:05 +0000)]

update test output

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heister [Mon, 28 Oct 2013 20:34:28 +0000 (20:34 +0000)]

simplify test

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heister [Mon, 28 Oct 2013 20:24:24 +0000 (20:24 +0000)]

add test

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heister [Mon, 28 Oct 2013 20:22:46 +0000 (20:22 +0000)]

update ignores

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bangerth [Mon, 28 Oct 2013 16:08:39 +0000 (16:08 +0000)]

Cast a variable to make some newer Xcode compilers happy.

git-svn-id: https://svn.dealii.org/trunk@31468 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Mon, 28 Oct 2013 15:32:13 +0000 (15:32 +0000)]

fix a bug in linearized inequality and the residual in overall algorithm

git-svn-id: https://svn.dealii.org/trunk@31467 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Mon, 28 Oct 2013 14:21:21 +0000 (14:21 +0000)]

Use TaskGroup instead of ThreadGroup in step-9.

git-svn-id: https://svn.dealii.org/trunk@31466 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Mon, 28 Oct 2013 14:13:09 +0000 (14:13 +0000)]

Use TaskGroup instead of ThreadGroup in step-14.

git-svn-id: https://svn.dealii.org/trunk@31465 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 28 Oct 2013 13:23:58 +0000 (13:23 +0000)]

Be less circumspect about resizing arrays when we want to add
default-constructed elements.

git-svn-id: https://svn.dealii.org/trunk@31464 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 28 Oct 2013 13:19:14 +0000 (13:19 +0000)]

More minor formatting edits.

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bangerth [Mon, 28 Oct 2013 13:16:53 +0000 (13:16 +0000)]

Formatting fix.

git-svn-id: https://svn.dealii.org/trunk@31462 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 28 Oct 2013 13:13:21 +0000 (13:13 +0000)]

Cleanup: Remove stale variable from Config.cmake.in

git-svn-id: https://svn.dealii.org/trunk@31461 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 28 Oct 2013 13:07:50 +0000 (13:07 +0000)]

Bugfix: Commit the second half of the Executables.cmake --> Targets.cmake switch [1]

[1] And take an extra course in "how to use subversion"

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bangerth [Mon, 28 Oct 2013 13:05:28 +0000 (13:05 +0000)]

Fix a small bug in a formula.

git-svn-id: https://svn.dealii.org/trunk@31459 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 28 Oct 2013 03:19:04 +0000 (03:19 +0000)]

More comments.

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bangerth [Mon, 28 Oct 2013 03:09:24 +0000 (03:09 +0000)]

Document the changes to WorkStream.

git-svn-id: https://svn.dealii.org/trunk@31457 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 28 Oct 2013 02:59:42 +0000 (02:59 +0000)]

Unify spelling of arguments.

git-svn-id: https://svn.dealii.org/trunk@31456 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 28 Oct 2013 02:38:45 +0000 (02:38 +0000)]

Minor edit.

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bangerth [Mon, 28 Oct 2013 02:34:31 +0000 (02:34 +0000)]

Update.

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bangerth [Mon, 28 Oct 2013 02:33:55 +0000 (02:33 +0000)]

Document the new WorkStream approach in detail.

git-svn-id: https://svn.dealii.org/trunk@31453 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 28 Oct 2013 02:23:20 +0000 (02:23 +0000)]

Link to a discussion in step-13.

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bangerth [Mon, 28 Oct 2013 02:06:44 +0000 (02:06 +0000)]

Reference places where WorkStream is discussed previously.

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bangerth [Mon, 28 Oct 2013 00:32:05 +0000 (00:32 +0000)]

Try to avoid awkward formatting by doxygen that doesn't show all the text in HTML...

git-svn-id: https://svn.dealii.org/trunk@31450 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Sun, 27 Oct 2013 23:00:07 +0000 (23:00 +0000)]

add the rhs in the linearized inequality

git-svn-id: https://svn.dealii.org/trunk@31449 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 27 Oct 2013 21:07:34 +0000 (21:07 +0000)]

Undo last commit.

git-svn-id: https://svn.dealii.org/trunk@31448 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 27 Oct 2013 20:57:29 +0000 (20:57 +0000)]

Bugfix: Use CMAKE_CXX_FLAGS for tests...

git-svn-id: https://svn.dealii.org/trunk@31447 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 26 Oct 2013 15:24:11 +0000 (15:24 +0000)]

Bugfix: Guard reading of H5Pubconf.h in FindHDF5.cmake, fix corrupted configure_hdf5.cmake

git-svn-id: https://svn.dealii.org/trunk@31446 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 26 Oct 2013 14:56:01 +0000 (14:56 +0000)]

Fix links

git-svn-id: https://svn.dealii.org/trunk@31445 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 26 Oct 2013 13:49:05 +0000 (13:49 +0000)]

Testsuite: And finally get it right.

git-svn-id: https://svn.dealii.org/trunk@31444 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 26 Oct 2013 12:54:51 +0000 (12:54 +0000)]

Bugfix: Why so complicated? Just mention test overrides via environment and let environment always win...

git-svn-id: https://svn.dealii.org/trunk@31443 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 26 Oct 2013 12:49:12 +0000 (12:49 +0000)]

Fix up comment.

git-svn-id: https://svn.dealii.org/trunk@31442 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 26 Oct 2013 12:44:23 +0000 (12:44 +0000)]

Add a homepage

git-svn-id: https://svn.dealii.org/trunk@31441 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 26 Oct 2013 12:37:41 +0000 (12:37 +0000)]

Minor language fixes.

git-svn-id: https://svn.dealii.org/trunk@31440 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 26 Oct 2013 12:36:37 +0000 (12:36 +0000)]

Bugfix: Regenerate testsuite subprojects if the main project configuration has changed

git-svn-id: https://svn.dealii.org/trunk@31439 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 26 Oct 2013 12:34:36 +0000 (12:34 +0000)]

Mention the conversion of step-9/13/14 to WorkStream.

git-svn-id: https://svn.dealii.org/trunk@31438 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 26 Oct 2013 12:20:58 +0000 (12:20 +0000)]

Link to tutorial programs. List Bruno as one of the authors.

git-svn-id: https://svn.dealii.org/trunk@31437 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 26 Oct 2013 11:38:48 +0000 (11:38 +0000)]

Fix language.

git-svn-id: https://svn.dealii.org/trunk@31436 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 26 Oct 2013 11:34:24 +0000 (11:34 +0000)]

Explain the new governance structure.

git-svn-id: https://svn.dealii.org/trunk@31435 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 26 Oct 2013 11:32:57 +0000 (11:32 +0000)]

Bugfix: Second try...

git-svn-id: https://svn.dealii.org/trunk@31434 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 26 Oct 2013 09:48:13 +0000 (09:48 +0000)]

CMake: Simplify cross compilation stuff and documentation

git-svn-id: https://svn.dealii.org/trunk@31433 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 26 Oct 2013 09:14:21 +0000 (09:14 +0000)]

Bugfix: Simplify project config generation

git-svn-id: https://svn.dealii.org/trunk@31432 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 26 Oct 2013 09:14:20 +0000 (09:14 +0000)]

Bugfix: Avoid unnecessary reconfigurations of subprojects

git-svn-id: https://svn.dealii.org/trunk@31431 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 26 Oct 2013 09:14:19 +0000 (09:14 +0000)]

Bugfix: Be more greedy and cache test configurations in subprojects

git-svn-id: https://svn.dealii.org/trunk@31430 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 25 Oct 2013 23:55:48 +0000 (23:55 +0000)]

fix bug in DataOut

git-svn-id: https://svn.dealii.org/trunk@31429 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 25 Oct 2013 22:47:38 +0000 (22:47 +0000)]

test output was incorrect, because the first entry needs to be skipped. This breaks the test (to be fixed soon)

git-svn-id: https://svn.dealii.org/trunk@31428 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 25 Oct 2013 22:45:22 +0000 (22:45 +0000)]

Document the change-over to WorkStream.

git-svn-id: https://svn.dealii.org/trunk@31427 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 25 Oct 2013 19:18:18 +0000 (19:18 +0000)]

... and one more.

git-svn-id: https://svn.dealii.org/trunk@31426 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 25 Oct 2013 19:14:49 +0000 (19:14 +0000)]

Fix sentence

git-svn-id: https://svn.dealii.org/trunk@31425 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 25 Oct 2013 16:42:18 +0000 (16:42 +0000)]

remove header that is not needed

git-svn-id: https://svn.dealii.org/trunk@31424 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 25 Oct 2013 14:13:20 +0000 (14:13 +0000)]

CMake: Code cleanup and resolve cache invalidation problem

git-svn-id: https://svn.dealii.org/trunk@31423 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 25 Oct 2013 11:24:34 +0000 (11:24 +0000)]

Bugfix: We cannot throw in Subscriptor::do_unsubscribe either because it is used in the destructor of SmartPointer.

git-svn-id: https://svn.dealii.org/trunk@31422 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 25 Oct 2013 04:03:21 +0000 (04:03 +0000)]

First part of documentation adjustment.

git-svn-id: https://svn.dealii.org/trunk@31421 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 25 Oct 2013 02:57:52 +0000 (02:57 +0000)]

Fix format of the link.

git-svn-id: https://svn.dealii.org/trunk@31420 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 25 Oct 2013 02:57:38 +0000 (02:57 +0000)]

Mention the multithreading module.

git-svn-id: https://svn.dealii.org/trunk@31419 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 25 Oct 2013 02:57:16 +0000 (02:57 +0000)]

Reference step-9, where we show threads the first time. Fix reference
to module.

git-svn-id: https://svn.dealii.org/trunk@31418 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 24 Oct 2013 22:41:57 +0000 (22:41 +0000)]

Adapt slightly.

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heister [Thu, 24 Oct 2013 22:21:46 +0000 (22:21 +0000)]

fix my homepage

git-svn-id: https://svn.dealii.org/trunk@31416 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 24 Oct 2013 22:16:11 +0000 (22:16 +0000)]

Some minor edits.

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bangerth [Thu, 24 Oct 2013 22:15:50 +0000 (22:15 +0000)]

Add two references to step-51.

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bangerth [Thu, 24 Oct 2013 22:00:21 +0000 (22:00 +0000)]

Some minor edits.

git-svn-id: https://svn.dealii.org/trunk@31413 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 24 Oct 2013 21:13:14 +0000 (21:13 +0000)]

typos

git-svn-id: https://svn.dealii.org/trunk@31412 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 24 Oct 2013 20:59:15 +0000 (20:59 +0000)]

remove tbb headers

git-svn-id: https://svn.dealii.org/trunk@31411 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 24 Oct 2013 20:58:35 +0000 (20:58 +0000)]

remove tbb headers

git-svn-id: https://svn.dealii.org/trunk@31410 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 24 Oct 2013 20:14:45 +0000 (20:14 +0000)]

Bugfix: Unset a cached variable if package is unsuitable

git-svn-id: https://svn.dealii.org/trunk@31409 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 24 Oct 2013 19:53:18 +0000 (19:53 +0000)]

Comment code, rename guard files

git-svn-id: https://svn.dealii.org/trunk@31408 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Thu, 24 Oct 2013 19:24:26 +0000 (19:24 +0000)]

Use Threads::Task in step-13 and step-14.

git-svn-id: https://svn.dealii.org/trunk@31407 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 24 Oct 2013 14:50:38 +0000 (14:50 +0000)]

fix cmake warning

git-svn-id: https://svn.dealii.org/trunk@31406 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 24 Oct 2013 06:07:08 +0000 (06:07 +0000)]

Bugfix: Initialize _step_dir in build_tests/CMakeLists.txt before using it...

git-svn-id: https://svn.dealii.org/trunk@31405 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 23 Oct 2013 22:46:37 +0000 (22:46 +0000)]

Remove accidentally commited debug output

git-svn-id: https://svn.dealii.org/trunk@31404 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 23 Oct 2013 22:36:03 +0000 (22:36 +0000)]

Testsuite: Bugfix: Add a guard file mechanism

This commit adds a guard file mechanism to detect whether an individual
test that was forcefully interrupted e.g. by sigkilling the run_test.cmake
script due to hitting a timeout in ctest.

In that case all test stages are rerun completely.

git-svn-id: https://svn.dealii.org/trunk@31403 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 23 Oct 2013 21:45:02 +0000 (21:45 +0000)]

add failing no_normal_flux test

git-svn-id: https://svn.dealii.org/trunk@31402 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 23 Oct 2013 15:18:12 +0000 (15:18 +0000)]

add typedef

git-svn-id: https://svn.dealii.org/trunk@31401 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 23 Oct 2013 13:19:58 +0000 (13:19 +0000)]

fix documentation

git-svn-id: https://svn.dealii.org/trunk@31400 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 23 Oct 2013 09:15:40 +0000 (09:15 +0000)]

Bugfix: Improve dealii::ExceptionBase

Also provide a minimalistic error message if an exception derived
from dealii::ExceptionBase is just merely thrown (without the use of Assert
or AssertThrow).

git-svn-id: https://svn.dealii.org/trunk@31398 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 22 Oct 2013 22:48:44 +0000 (22:48 +0000)]

Bugfix: Compare compatible types to make clang-3.4 (trunk) happy

git-svn-id: https://svn.dealii.org/trunk@31395 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 22 Oct 2013 20:47:56 +0000 (20:47 +0000)]

fix a bunch of dead links

git-svn-id: https://svn.dealii.org/trunk@31391 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 22 Oct 2013 19:49:29 +0000 (19:49 +0000)]

Testsuite: Be a bit more relaxed in base/timer

git-svn-id: https://svn.dealii.org/trunk@31390 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 22 Oct 2013 19:19:51 +0000 (19:19 +0000)]

Leave a TODO. Fix a typo.

git-svn-id: https://svn.dealii.org/trunk@31389 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 22 Oct 2013 18:39:38 +0000 (18:39 +0000)]

make 3d test run faster by refining less. It runs close to the time limit on the tester

git-svn-id: https://svn.dealii.org/trunk@31387 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 22 Oct 2013 18:01:43 +0000 (18:01 +0000)]

Also remove stray noexcept(false)...

git-svn-id: https://svn.dealii.org/trunk@31386 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Tue, 22 Oct 2013 15:21:37 +0000 (15:21 +0000)]

Use tbb::task instead of Thread in step-13 and step-14.

git-svn-id: https://svn.dealii.org/trunk@31385 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 22 Oct 2013 09:50:17 +0000 (09:50 +0000)]

Port tests to new exception behaviour

git-svn-id: https://svn.dealii.org/trunk@31381 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 22 Oct 2013 09:50:02 +0000 (09:50 +0000)]

Do symmetric tensor product evaluation with even-odd formula.

git-svn-id: https://svn.dealii.org/trunk@31380 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 22 Oct 2013 08:56:34 +0000 (08:56 +0000)]

Bugfix and provide a news item

git-svn-id: https://svn.dealii.org/trunk@31379 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 22 Oct 2013 08:36:27 +0000 (08:36 +0000)]

Reorganize the exception handling in exception.h, remove noexcept(false) annotations from the library

* Provide an AssertNothrow macro that does behave exactly like Assert,
   except that if disable_abort_on_exception was called, it merely prints
   the exception name and continues normally (instead of throwing the
   exception).

* Use AssertNothrow in ~Subscriptor and ~GrowingVectorMemory to avoid an
   unexpected call to std::terminate in C++11 mode

* Remove noexcept(false) from the library because this seriously
   inconvenients the user

git-svn-id: https://svn.dealii.org/trunk@31378 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Mon, 21 Oct 2013 16:01:59 +0000 (16:01 +0000)]

Bugfix previous commit.

git-svn-id: https://svn.dealii.org/trunk@31375 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Mon, 21 Oct 2013 15:52:35 +0000 (15:52 +0000)]

SLEPc tests in trunk.

git-svn-id: https://svn.dealii.org/trunk@31374 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 21 Oct 2013 10:17:37 +0000 (10:17 +0000)]

Generalize apply_tensor_product functions so that they can use arbitrary Number objects, not just VectorizedArray types

git-svn-id: https://svn.dealii.org/trunk@31373 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 21 Oct 2013 09:37:10 +0000 (09:37 +0000)]

Move matrix-free tests into matrix_free directory

git-svn-id: https://svn.dealii.org/trunk@31372 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Mon, 21 Oct 2013 08:57:36 +0000 (08:57 +0000)]

Publication update.

git-svn-id: https://svn.dealii.org/trunk@31371 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 21 Oct 2013 08:49:41 +0000 (08:49 +0000)]

Fix bug in update_ghost_values of matrix free with partition_partition strategy for hybrid parallelism.

git-svn-id: https://svn.dealii.org/trunk@31370 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 21 Oct 2013 06:51:27 +0000 (06:51 +0000)]

Bugfix: Make output of run_test.cmake compatible with makereport.py

git-svn-id: https://svn.dealii.org/trunk@31369 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 21 Oct 2013 06:43:09 +0000 (06:43 +0000)]

Bugfix: Avoid duplicate entries in categories candidate list

git-svn-id: https://svn.dealii.org/trunk@31368 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 21 Oct 2013 00:05:23 +0000 (00:05 +0000)]

Testsuite: Bugfixes

git-svn-id: https://svn.dealii.org/trunk@31367 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 20 Oct 2013 23:45:14 +0000 (23:45 +0000)]

Testsuite: Add a-framework/configure

git-svn-id: https://svn.dealii.org/trunk@31366 0785d39b-7218-0410-832d-ea1e28bc413d

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