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https://gitweb.dealii.org/ - dealii.git/log
Daniel Arndt [Tue, 22 Nov 2022 01:05:58 +0000 (20:05 -0500)]
Merge pull request #14448 from bangerth/vtu-6
Timo Heister [Mon, 21 Nov 2022 22:34:53 +0000 (17:34 -0500)]
Merge pull request #14449 from bangerth/vtu-9
Move declaration of vtu_stream to where it is used.
Daniel Arndt [Mon, 21 Nov 2022 21:53:37 +0000 (16:53 -0500)]
Merge pull request #14437 from quangx/fix-step76-document
Wolfgang Bangerth [Mon, 21 Nov 2022 18:02:18 +0000 (11:02 -0700)]
Move declaration of vtu_stream to where it is used.
While there, also use the underlying stream rather than vtu_out where possible.
Quang Hoang [Fri, 18 Nov 2022 20:36:28 +0000 (15:36 -0500)]
fix typos
Fix reference step 59
fix typo step-79
fix typo results.dox
step-76 doc fix
add changes from indent
David Wells [Mon, 21 Nov 2022 18:11:13 +0000 (13:11 -0500)]
Merge pull request #14447 from tjhei/fix-indent-script
fix indent script
Wolfgang Bangerth [Mon, 21 Nov 2022 05:20:43 +0000 (22:20 -0700)]
Use variable-sized std::array instead of fixed number of arguments.
David Wells [Mon, 21 Nov 2022 17:40:14 +0000 (12:40 -0500)]
Merge pull request #14446 from bangerth/vtu-5
Simplify code
Timo Heister [Mon, 21 Nov 2022 15:44:06 +0000 (10:44 -0500)]
fix indent script
David Wells [Mon, 21 Nov 2022 14:33:26 +0000 (09:33 -0500)]
Merge pull request #14444 from bangerth/ident
Add a bit of documentation.
Daniel Arndt [Mon, 21 Nov 2022 13:06:02 +0000 (08:06 -0500)]
Merge pull request #14429 from masterleinad/cuda_build_tests
Wolfgang Bangerth [Sun, 20 Nov 2022 01:23:44 +0000 (18:23 -0700)]
Convert yet another function.
Wolfgang Bangerth [Fri, 18 Nov 2022 23:03:09 +0000 (16:03 -0700)]
Simplify yet more code.
Wolfgang Bangerth [Fri, 18 Nov 2022 22:58:45 +0000 (15:58 -0700)]
Simplify more code.
Wolfgang Bangerth [Fri, 18 Nov 2022 16:17:37 +0000 (09:17 -0700)]
Add a bit of documentation.
Matthias Maier [Sat, 19 Nov 2022 03:27:43 +0000 (21:27 -0600)]
Merge pull request #14424 from masterleinad/kokkos_print_backends_and_archs
Print backends and architectures for Kokkos
Daniel Arndt [Tue, 15 Nov 2022 18:15:10 +0000 (12:15 -0600)]
Print backends and architectures for Kokkos
Daniel Arndt [Sat, 19 Nov 2022 00:49:41 +0000 (18:49 -0600)]
Build CUDA tests in CUDA CI
Wolfgang Bangerth [Fri, 18 Nov 2022 22:51:49 +0000 (15:51 -0700)]
Simplify some code.
David Wells [Fri, 18 Nov 2022 04:01:11 +0000 (23:01 -0500)]
Merge pull request #14442 from marcfehling/vectorcopy
Use copy function internally in LA::d::Vector.
Daniel Arndt [Thu, 17 Nov 2022 23:21:49 +0000 (17:21 -0600)]
Merge pull request #14438 from bangerth/petsc
Wolfgang Bangerth [Thu, 17 Nov 2022 20:46:24 +0000 (13:46 -0700)]
Re-introduce (now deprecated) old constructor.
Timo Heister [Thu, 17 Nov 2022 20:28:15 +0000 (15:28 -0500)]
Merge pull request #14436 from Rombur/cuda_ice
Update CI workflow to CUDA 11.8
Bruno Turcksin [Thu, 17 Nov 2022 16:28:05 +0000 (11:28 -0500)]
Merge pull request #14421 from bangerth/vtu-3
Bruno Turcksin [Thu, 17 Nov 2022 15:57:14 +0000 (15:57 +0000)]
Install boost
Wolfgang Bangerth [Thu, 17 Nov 2022 04:33:33 +0000 (21:33 -0700)]
Add a changelog.
Wolfgang Bangerth [Thu, 17 Nov 2022 00:19:50 +0000 (17:19 -0700)]
Simplify step-40.
Wolfgang Bangerth [Thu, 17 Nov 2022 00:19:37 +0000 (17:19 -0700)]
Avoid the use of deprecated constructors.
Wolfgang Bangerth [Thu, 17 Nov 2022 00:13:10 +0000 (17:13 -0700)]
Deprecate the use of PETScWrapper::Solver* constructors that take an MPI communicator.
Wolfgang Bangerth [Wed, 16 Nov 2022 21:58:27 +0000 (14:58 -0700)]
Simplify code.
Wolfgang Bangerth [Wed, 16 Nov 2022 21:52:55 +0000 (14:52 -0700)]
Remove the need to store the MPI communicator in PETScWrappers::SolverBase.
Wolfgang Bangerth [Wed, 16 Nov 2022 21:52:19 +0000 (14:52 -0700)]
Provide the ability to query the communicator from PETSc precondiditioners.
Daniel Arndt [Thu, 17 Nov 2022 15:29:35 +0000 (09:29 -0600)]
Merge pull request #14434 from drwells/sparsity-pattern-base-dof-tools
Timo Heister [Thu, 17 Nov 2022 12:47:41 +0000 (07:47 -0500)]
Merge pull request #14439 from bangerth/comment
Fix a misspelling in a comment.
Wolfgang Bangerth [Thu, 17 Nov 2022 04:51:27 +0000 (21:51 -0700)]
Fix a misspelling in a comment.
David Wells [Wed, 16 Nov 2022 23:06:22 +0000 (18:06 -0500)]
DoFTools: use some ranged-for loops
Bruno Turcksin [Wed, 16 Nov 2022 20:23:07 +0000 (20:23 +0000)]
Update CI workflow to CUDA 11.8
David Wells [Wed, 16 Nov 2022 18:32:52 +0000 (13:32 -0500)]
DoFTools: convert some functions to use add_row_entries().
David Wells [Wed, 16 Nov 2022 18:30:31 +0000 (13:30 -0500)]
SparsityPattern: add an assertion in input data.
Martin Kronbichler [Wed, 16 Nov 2022 15:38:44 +0000 (16:38 +0100)]
Merge pull request #14427 from marcfehling/reinit
Make TrilinosWrappers::MPI::Vector::reinit accept Utilities::MPI::Partitioner.
Martin Kronbichler [Wed, 16 Nov 2022 15:37:39 +0000 (16:37 +0100)]
Merge pull request #14432 from drwells/sparsity-pattern-base-particles
Particles: Remove template on sparsity pattern type.
Daniel Arndt [Wed, 16 Nov 2022 05:02:32 +0000 (23:02 -0600)]
Merge pull request #14431 from drwells/sparsity-pattern-base-nonmatching
Wolfgang Bangerth [Wed, 16 Nov 2022 03:28:37 +0000 (20:28 -0700)]
Merge pull request #14425 from Rombur/belos
Guard Belos code with macros
David Wells [Sat, 5 Nov 2022 15:42:24 +0000 (11:42 -0400)]
DoFTools: Remove template on sparsity pattern type.
David Wells [Sat, 5 Nov 2022 02:33:46 +0000 (22:33 -0400)]
Particles: Remove template on sparsity pattern type.
David Wells [Sat, 5 Nov 2022 02:10:56 +0000 (22:10 -0400)]
NonMatching: Remove template on sparsity pattern type.
This is no longer necessary since all of our SparsityPatterns inherit from
SparsityPatternBase. This file was previously the most expensive to compile in
the entire library so cutting down the number of instantiations by a factor of 4
or 6 (with Trilinos) is quite nice.
Daniel Arndt [Tue, 15 Nov 2022 21:40:52 +0000 (15:40 -0600)]
Merge pull request #14415 from tamiko/ninja_workaround
Marc Fehling [Tue, 15 Nov 2022 21:40:19 +0000 (14:40 -0700)]
Use copy function internally in LA::d::Vector.
Daniel Arndt [Tue, 15 Nov 2022 20:34:01 +0000 (14:34 -0600)]
Merge pull request #14423 from tjhei/rename-inst-file
Marc Fehling [Tue, 15 Nov 2022 20:13:33 +0000 (13:13 -0700)]
Make TrilinosWrappers::MPI::Vector::reinit accept Utilities::MPI::Partitioner.
Bruno Turcksin [Tue, 15 Nov 2022 19:38:28 +0000 (19:38 +0000)]
Guard Belos code with macros
Daniel Arndt [Tue, 15 Nov 2022 18:28:30 +0000 (12:28 -0600)]
Merge pull request #14422 from tjhei/remove-cu-doc-stuff
Martin Kronbichler [Tue, 15 Nov 2022 17:57:03 +0000 (18:57 +0100)]
Merge pull request #14420 from drwells/de-template-af-local-to-global
De template AffineConstraints::add_entries_local_to_global()
Wolfgang Bangerth [Tue, 15 Nov 2022 16:58:47 +0000 (09:58 -0700)]
Try to use std::make_tuple() to get around compiler warnings.
Timo Heister [Tue, 15 Nov 2022 15:04:38 +0000 (10:04 -0500)]
rename an inst file
Timo Heister [Tue, 15 Nov 2022 14:48:34 +0000 (09:48 -0500)]
remove .cu extension in program2doxygen
Wolfgang Bangerth [Tue, 15 Nov 2022 14:47:03 +0000 (07:47 -0700)]
Work around a strange compiler issue.
The MPI build bot complains that using a {...} initializer list would require the use
of a conversion constructor marked as 'explicit':
data_out_base.cc:1156:29: error: converting to ‘std::tuple<unsigned int, unsigned int>’ from initializer list would use explicit constructor ‘constexpr std::tuple<_T1, _T2>::tuple(_U1&&, _U2&&) [with _U1 = unsigned int&; _U2 = unsigned int&; <template-parameter-2-3> = void; _T1 = unsigned int; _T2 = unsigned int]’
That makes no sense, but let's appease the compiler by being explicit.
Timo Heister [Tue, 15 Nov 2022 14:36:47 +0000 (09:36 -0500)]
Merge pull request #14377 from masterleinad/move_cuda_to_nvcc_wrapper_kokkos
Move CUDA compilation to Kokkos with nvcc_wrapper
Wolfgang Bangerth [Thu, 10 Nov 2022 22:20:53 +0000 (15:20 -0700)]
Make a function return its object by value, rather than via reference.
Wolfgang Bangerth [Thu, 10 Nov 2022 21:56:54 +0000 (14:56 -0700)]
Rename a function and associated objects.
Wolfgang Bangerth [Thu, 10 Nov 2022 21:30:45 +0000 (14:30 -0700)]
Simplify the call to a function on a separate task.
Wolfgang Bangerth [Thu, 10 Nov 2022 21:13:27 +0000 (14:13 -0700)]
Rename and refactor another function.
Wolfgang Bangerth [Thu, 10 Nov 2022 20:48:47 +0000 (13:48 -0700)]
Simplify testing whether a cell is a hypercube.
Wolfgang Bangerth [Thu, 10 Nov 2022 18:57:36 +0000 (11:57 -0700)]
Don't explicitly specify template arguments where not necessary.
Wolfgang Bangerth [Thu, 10 Nov 2022 18:56:16 +0000 (11:56 -0700)]
Rename a variable. Unname another.
Wolfgang Bangerth [Thu, 10 Nov 2022 18:52:53 +0000 (11:52 -0700)]
Let a function return by-value, rather than through multiple reference arguments.
David Wells [Thu, 3 Nov 2022 18:21:18 +0000 (14:21 -0400)]
AffineConstraints: de-template add_entries_local_to_global() part 2
David Wells [Thu, 3 Nov 2022 17:38:34 +0000 (13:38 -0400)]
AffineConstraints: de-template add_entries_local_to_global() part 1
David Wells [Thu, 3 Nov 2022 16:50:51 +0000 (12:50 -0400)]
AffineConstraints: de-template set_sparsity_diagonals().
Daniel Arndt [Mon, 14 Nov 2022 16:02:28 +0000 (11:02 -0500)]
Merge pull request #14418 from drwells/tw-sparsity-pattern-base
Daniel Arndt [Mon, 14 Nov 2022 15:59:06 +0000 (10:59 -0500)]
Merge pull request #14398 from drwells/remove-bsp-constraint-function
Martin Kronbichler [Mon, 14 Nov 2022 09:07:17 +0000 (10:07 +0100)]
Merge pull request #14419 from drwells/bsp-block-sparsity-pattern-base
BlockSparsityPatternBase: inherit from SparsityPatternBase.
David Wells [Sun, 30 Oct 2022 13:05:50 +0000 (09:05 -0400)]
BlockSparsityPatternBase: inherit from SparsityPatternBase.
David Wells [Thu, 3 Nov 2022 16:40:14 +0000 (12:40 -0400)]
TrilinosWrappers::SparsityPattern: inherit from SparsityPatternBase.
David Wells [Tue, 1 Nov 2022 12:51:53 +0000 (08:51 -0400)]
TrilinosWrappers::SparsityPattern: clean up whitespace.
David Wells [Sun, 13 Nov 2022 21:06:21 +0000 (16:06 -0500)]
Optimize BlockSparsityPatternBase::add_entries().
We can avoid some expensive parts and looping over data more than once by
utilizing the fact that the DoFs are sorted, which implies that they are also
sorted by block.
David Wells [Sun, 13 Nov 2022 21:12:26 +0000 (16:12 -0500)]
Merge pull request #14406 from bangerth/vtu-2
More refactoring of the VTU output.
Martin Kronbichler [Sun, 13 Nov 2022 16:23:46 +0000 (17:23 +0100)]
Merge pull request #14413 from tcojean/fix_findginkgo_cmake
Fix FindGINKGO.cmake for Ginkgo 1.5.0
Peter Munch [Sat, 12 Nov 2022 20:40:41 +0000 (21:40 +0100)]
Merge pull request #14384 from kronbichler/performance_test
Add performance test showing compressible Navier-Stokes equations
David Wells [Sun, 6 Nov 2022 13:13:25 +0000 (08:13 -0500)]
AffineConstraints: remove the block sparsity constraint function.
This function predates BlockSparsityPatternBase<T>::add_entries(), which does
the same thing (essentially just updating the individual blocks after computing
offsets). For good measure I added a test which verifies that we get identical
output with constraints and a DoF mask table before and after the switch.
Peter Munch [Sat, 12 Nov 2022 06:32:46 +0000 (07:32 +0100)]
Merge pull request #14414 from lpsaavedra/fix_small_typo
Fix small typos in the intro.dox of Step-66
Matthias Maier [Fri, 11 Nov 2022 23:47:10 +0000 (17:47 -0600)]
add a changes entry
Matthias Maier [Fri, 11 Nov 2022 23:37:12 +0000 (17:37 -0600)]
CMake: add a compile_test_executables target
This commit adds a top-level compile_test_executables and modifies the
ADD_TEST() macro to let it depend on all executables generated by our
DEAL_II_PICKUP_TESTS() mechanism.
This is mainly intended for user projects and works around the issue
that simultaneous calls to ninja are not reentrant, meaning when
configuring a user project with ninja one is otherwise limited to run
tests in serial.
Laura Prieto Saavedra [Fri, 11 Nov 2022 19:41:01 +0000 (14:41 -0500)]
Fix small typos in intro.dox
Terry Cojean [Fri, 11 Nov 2022 12:18:19 +0000 (13:18 +0100)]
Mention reason for change.
Co-authored-by: Martin Kronbichler <martin.kronbichler@uni-a.de>
Terry Cojean [Fri, 11 Nov 2022 12:04:41 +0000 (13:04 +0100)]
Fix FindGINKGO.cmake for Ginkgo 1.5.0
Martin Kronbichler [Fri, 11 Nov 2022 07:45:18 +0000 (08:45 +0100)]
Merge pull request #14396 from drwells/add-sparsity-pattern-base
(Dynamic)SparsityPattern: inherit from SparsityPatternBase.
Daniel Arndt [Thu, 10 Nov 2022 23:02:34 +0000 (18:02 -0500)]
Merge pull request #14409 from bangerth/x-1
David Wells [Thu, 10 Nov 2022 22:55:12 +0000 (17:55 -0500)]
Merge pull request #14410 from bangerth/x-3
Remove comments that don't actually explain anything.
Wolfgang Bangerth [Thu, 10 Nov 2022 21:31:49 +0000 (14:31 -0700)]
Use a range-based for loop.
Wolfgang Bangerth [Thu, 10 Nov 2022 18:46:22 +0000 (11:46 -0700)]
Remove comments that don't actually explain anything.
Wolfgang Bangerth [Thu, 10 Nov 2022 18:40:43 +0000 (11:40 -0700)]
Do not mark functions in anonymous namespaces as 'static'.
David Wells [Thu, 10 Nov 2022 03:03:41 +0000 (22:03 -0500)]
Merge pull request #14407 from bangerth/doc-3
Add a documentation note.
David Wells [Thu, 10 Nov 2022 03:03:12 +0000 (22:03 -0500)]
Merge pull request #14408 from bangerth/doc-2
Fix a mistake in the documentation.
Wolfgang Bangerth [Wed, 9 Nov 2022 04:30:58 +0000 (21:30 -0700)]
Re-factor the use of write_nodes() for VTU output.
As part of this, just output the vertex locations as one big array (like all
other data), rather than breaking it every three coordinates onto a
separate line.
Wolfgang Bangerth [Tue, 8 Nov 2022 22:09:37 +0000 (15:09 -0700)]
Do not use VtuStream to output data object; do it directly.
Wolfgang Bangerth [Thu, 10 Nov 2022 00:20:17 +0000 (17:20 -0700)]
Fix a mistake in the documentation.
Wolfgang Bangerth [Thu, 10 Nov 2022 00:22:52 +0000 (17:22 -0700)]
Add a documentation note.
Martin Kronbichler [Wed, 9 Nov 2022 09:11:41 +0000 (10:11 +0100)]
Merge pull request #14397 from drwells/cleanup-bsp
Cleanup BSP
Martin Kronbichler [Wed, 9 Nov 2022 09:10:00 +0000 (10:10 +0100)]
Merge pull request #14404 from drwells/update-cuda-tester-backports
CI: Update backports.
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