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https://gitweb.dealii.org/ - dealii.git/log
Wolfgang Bangerth [Sat, 11 Jan 2020 22:35:05 +0000 (15:35 -0700)]
Replace a text description by a static_assert().
Daniel Arndt [Thu, 16 Jan 2020 15:45:43 +0000 (08:45 -0700)]
Merge pull request #9096 from tamiko/mg_output
cleanup typedefs in DataOut
Daniel Arndt [Thu, 16 Jan 2020 14:57:59 +0000 (07:57 -0700)]
Merge pull request #9348 from kronbichler/typo_doc
Fix typo in step-49 doc about gmsh
Daniel Arndt [Thu, 9 Jan 2020 19:50:45 +0000 (14:50 -0500)]
Fix test
Martin Kronbichler [Thu, 16 Jan 2020 07:44:15 +0000 (08:44 +0100)]
Fix typo in step-49 doc about gmsh
Martin Kronbichler [Thu, 16 Jan 2020 07:12:13 +0000 (08:12 +0100)]
Merge pull request #9335 from bangerth/49
Simplify description in step-49.
Martin Kronbichler [Thu, 16 Jan 2020 07:11:02 +0000 (08:11 +0100)]
Merge pull request #9249 from masterleinad/replace_more_threads_mutex
Replace Threads::mutex by std::mutex
Martin Kronbichler [Thu, 16 Jan 2020 07:09:12 +0000 (08:09 +0100)]
Merge pull request #9344 from bangerth/6
Talk about mesh quality in step-6.
Martin Kronbichler [Thu, 16 Jan 2020 07:06:38 +0000 (08:06 +0100)]
Merge pull request #9345 from bangerth/49-2
Clarify comments about distort_random() in step-49.
Daniel Arndt [Thu, 16 Jan 2020 06:39:59 +0000 (23:39 -0700)]
Merge pull request #9346 from peterrum/exception_fix_type
Fix input argument type of ExcFileNotOpen()
Peter Munch [Thu, 16 Jan 2020 06:30:59 +0000 (07:30 +0100)]
Fix input arguemnt type of ExcFileNotOpen()
Wolfgang Bangerth [Thu, 16 Jan 2020 01:21:49 +0000 (18:21 -0700)]
Clarify comments about distort_random() in step-49.
Wolfgang Bangerth [Thu, 16 Jan 2020 00:39:40 +0000 (17:39 -0700)]
Talk about mesh quality in step-6.
Timo Heister [Wed, 15 Jan 2020 22:35:58 +0000 (17:35 -0500)]
Merge pull request #9327 from bangerth/gmsh
Better document gmsh's features.
Wolfgang Bangerth [Wed, 15 Jan 2020 16:18:45 +0000 (09:18 -0700)]
Simplify description in step-49.
Wolfgang Bangerth [Wed, 15 Jan 2020 00:15:29 +0000 (17:15 -0700)]
Better document gmsh's features.
David Wells [Wed, 15 Jan 2020 21:15:25 +0000 (16:15 -0500)]
Merge pull request #9288 from krishnakumarg1984/krishna_constraints_doc_fix
Update constraints documentation module to reflect recent updates to step-6
David Wells [Wed, 15 Jan 2020 21:09:52 +0000 (16:09 -0500)]
Merge pull request #9337 from masterleinad/fix_some_coverity
Fix some coverity complains
David Wells [Wed, 15 Jan 2020 21:03:35 +0000 (16:03 -0500)]
Merge pull request #9328 from bangerth/write-svg
Fix the instantiations of GridOut::write_svg().
David Wells [Wed, 15 Jan 2020 20:57:45 +0000 (15:57 -0500)]
Merge pull request #9340 from krishnakumarg1984/step49_fixes
Lots of documentation fixes to Step-49 tutorial
Krishnakumar Gopalakrishnan [Tue, 14 Jan 2020 18:05:30 +0000 (18:05 +0000)]
Lots of documentation fixes to Step-49 tutorial
aims to wrap create_coarse_grid function in monospace font
fixes a minor typo
trying to fix the monospace font of step-49.cc file
in step 49, simplify the boundary_count loop by directly using active_face_iterators
In step-49, updates the transform code to directly correspond 1:1 with the given math formula
semantic font use for code in step-49 results/extension
Fixes a documentation error. Move extract_boundary_mesh from GridTools to GridGenerator namespace in step-49
semantic font use for code in step-49 results/extension
Daniel Arndt [Wed, 15 Jan 2020 18:04:35 +0000 (11:04 -0700)]
Merge pull request #9272 from bangerth/deprecate
Make DoFTools::count_dofs_per_{component,block} return its data.
Wolfgang Bangerth [Wed, 15 Jan 2020 17:15:29 +0000 (10:15 -0700)]
Merge pull request #9300 from krishnakumarg1984/krishna_fix_step6_results
In step 6 results doc, move the header file inclusion sentence to reflect that we need it for Sparse_ILU and not Jacobi preconditioner
Daniel Arndt [Wed, 15 Jan 2020 16:52:53 +0000 (09:52 -0700)]
Merge pull request #9333 from bangerth/pre
Use @pre instead of @note in a number of places.
Daniel Arndt [Wed, 15 Jan 2020 16:14:00 +0000 (09:14 -0700)]
Fix some coverity complains
Timo Heister [Wed, 15 Jan 2020 16:21:47 +0000 (11:21 -0500)]
Merge pull request #9332 from bangerth/changelog
Add a changelog for step-71.
Wolfgang Bangerth [Wed, 15 Jan 2020 16:02:00 +0000 (09:02 -0700)]
Merge pull request #9331 from krishnakumarg1984/fix_gmsh_url
Fix url to the gmsh website
Wolfgang Bangerth [Wed, 15 Jan 2020 05:24:02 +0000 (22:24 -0700)]
Use @pre instead of @note in a number of places.
Wolfgang Bangerth [Wed, 15 Jan 2020 15:51:47 +0000 (08:51 -0700)]
Add a changelog for step-71.
Krishnakumar Gopalakrishnan [Wed, 15 Jan 2020 14:08:15 +0000 (14:08 +0000)]
Updates the www URL to gmsh website
Bruno Turcksin [Wed, 15 Jan 2020 13:36:21 +0000 (08:36 -0500)]
Add a set of new python wrappers (#9178)
Add a set of new python wrappers
Timo Heister [Wed, 15 Jan 2020 13:24:31 +0000 (08:24 -0500)]
Merge pull request #9329 from bangerth/hyperball
Better document an issue with curved boundaries.
Daniel Arndt [Wed, 15 Jan 2020 06:38:20 +0000 (23:38 -0700)]
Merge pull request #9297 from drwells/improve-deduplicate
Make GridTools::delete_duplicate_vertices() faster.
Wolfgang Bangerth [Wed, 15 Jan 2020 05:18:16 +0000 (22:18 -0700)]
Better document an issue of curved boundaries.
Daniel Arndt [Wed, 15 Jan 2020 04:54:17 +0000 (21:54 -0700)]
Merge pull request #9111 from bangerth/step-71
step-71: the biharmonic equation.
Wolfgang Bangerth [Wed, 15 Jan 2020 04:15:58 +0000 (21:15 -0700)]
Merge pull request #9326 from tjhei/tests_add_pack_unpack_07_output
add alternative output for tests/base/utilities_pack_unpack_07
Wolfgang Bangerth [Wed, 15 Jan 2020 01:03:24 +0000 (18:03 -0700)]
Add a changelog entry.
Wolfgang Bangerth [Wed, 15 Jan 2020 01:01:43 +0000 (18:01 -0700)]
Fix the instantiations of GridOut::write_svg().
By accident, we didn't instantiate the <3,3> case and users consequently
get funny linker errors that they have a hard time interpreting. Fix this.
Wolfgang Bangerth [Wed, 15 Jan 2020 00:39:00 +0000 (17:39 -0700)]
Merge pull request #9301 from tjhei/half_hyper_shell_warning
GridGenerator::half_hyper_shell warning
Timo Heister [Tue, 14 Jan 2020 22:09:19 +0000 (17:09 -0500)]
add alternative output for tests/base/utilities_pack_unpack_07
Daniel Arndt [Tue, 14 Jan 2020 20:52:16 +0000 (13:52 -0700)]
Merge pull request #9318 from krishnakumarg1984/fix_l2_second_attempt_krishna
converts l_2 to LaTeX code
Timo Heister [Tue, 14 Jan 2020 19:01:50 +0000 (14:01 -0500)]
Merge pull request #9321 from bangerth/jump
Use the jump and average latex macros.
Wolfgang Bangerth [Tue, 14 Jan 2020 17:30:22 +0000 (10:30 -0700)]
Use the jump and average latex macros.
Timo Heister [Tue, 14 Jan 2020 17:15:24 +0000 (12:15 -0500)]
Merge pull request #9259 from simonsticko/high_deriv_jumps_fe_interface
Implement jump_hessian and jump_3rd_derivative on FEInterfaceValues.
Krishnakumar Gopalakrishnan [Tue, 14 Jan 2020 16:14:03 +0000 (16:14 +0000)]
converts l_2 to LaTeX code
David Wells [Tue, 14 Jan 2020 14:13:02 +0000 (09:13 -0500)]
Merge pull request #9313 from krishnakumarg1984/step6_krishna_fix_outdated_doc
In step6, removes outdated sentence on destructor
David Wells [Tue, 14 Jan 2020 14:12:09 +0000 (09:12 -0500)]
Merge pull request #9315 from krishnakumarg1984/step6_fix_gausspoint
In step 6, removes the documentation sentences relating to quadrature formula degree since already done in Step-5
Krishnakumar Gopalakrishnan [Tue, 14 Jan 2020 13:51:22 +0000 (13:51 +0000)]
In step 6, removes the documentation sentences relating to quadrature formula degree since already done in Step-5
Krishnakumar Gopalakrishnan [Tue, 14 Jan 2020 13:07:32 +0000 (13:07 +0000)]
In step6, removes outdated sentence on destructor
Alexander Grayver [Tue, 17 Dec 2019 11:26:09 +0000 (12:26 +0100)]
Add a set of new python wrappers
Martin Kronbichler [Tue, 14 Jan 2020 08:12:04 +0000 (09:12 +0100)]
Merge pull request #9280 from tjhei/mg_transfer_build
Multigrid Transfer cleanup
Daniel Arndt [Fri, 10 Jan 2020 22:13:12 +0000 (17:13 -0500)]
Revert classes without copy constructor
David Wells [Sun, 12 Jan 2020 04:35:08 +0000 (23:35 -0500)]
Make GridTools::delete_duplicate_vertices() faster.
This change makes this function, for cube-like geometries, O(n^(3/2)) in 2D and
O(n^(5/3)) in 3D rather than O(n^2) by presorting vertices by value in a single
component and then only comparing vertices which are nearby in that component.
Wolfgang Bangerth [Tue, 14 Jan 2020 00:34:14 +0000 (17:34 -0700)]
Apply David Well's comments.
Co-Authored-By: David Wells <drwells@email.unc.edu>
David Wells [Tue, 14 Jan 2020 01:18:38 +0000 (20:18 -0500)]
Merge pull request #9311 from bangerth/6
Add a few links to step-6.
Wolfgang Bangerth [Mon, 13 Jan 2020 23:08:23 +0000 (16:08 -0700)]
Correctly name the variable that denotes gamma/h.
Wolfgang Bangerth [Mon, 13 Jan 2020 23:06:49 +0000 (16:06 -0700)]
Address the comments by peterrum.
Zhuoran Wang [Thu, 2 Jan 2020 02:45:41 +0000 (10:45 +0800)]
Replace 2gamma in boundary_worker by gamma,and update tables.
Timo Heister [Tue, 24 Dec 2019 18:53:28 +0000 (13:53 -0500)]
add keywords
Wolfgang Bangerth [Tue, 24 Dec 2019 17:12:52 +0000 (10:12 -0700)]
Hook step-71 into the tutorial page.
Wolfgang Bangerth [Tue, 24 Dec 2019 14:44:15 +0000 (07:44 -0700)]
Only build on step-12 to avoid tutorial graph clutter.
Wolfgang Bangerth [Tue, 24 Dec 2019 14:13:56 +0000 (07:13 -0700)]
More edits for step-71, and also address Timo's comments.
Timo Heister [Mon, 23 Dec 2019 21:16:36 +0000 (16:16 -0500)]
small grammar fixes
Wolfgang Bangerth [Mon, 23 Dec 2019 05:16:59 +0000 (22:16 -0700)]
Write the remainder of the documentation.
Natasha S. Sharma [Mon, 23 Dec 2019 03:01:36 +0000 (20:01 -0700)]
Provide more material for the introduction.
Wolfgang Bangerth [Sun, 22 Dec 2019 20:05:47 +0000 (13:05 -0700)]
Document the remainder of the program.
Wolfgang Bangerth [Sun, 22 Dec 2019 19:30:28 +0000 (12:30 -0700)]
Very substantially accelerate the assembly.
Zhuoran Wang [Fri, 20 Dec 2019 07:08:51 +0000 (00:08 -0700)]
Verified step-71 uses the best penalty and corrected a typo
Wolfgang Bangerth [Thu, 19 Dec 2019 21:33:35 +0000 (14:33 -0700)]
Update results.dox
Zhuoran Wang [Thu, 19 Dec 2019 17:33:49 +0000 (10:33 -0700)]
Add initial version of results.dox
Wolfgang Bangerth [Thu, 5 Dec 2019 20:03:13 +0000 (13:03 -0700)]
Write most of the rest of the in-code documentation for step-71.
Timo Heister [Sat, 30 Nov 2019 17:23:29 +0000 (12:23 -0500)]
Several cleanups.
Wolfgang Bangerth [Sat, 30 Nov 2019 05:07:44 +0000 (22:07 -0700)]
Start with an introduction.
Wolfgang Bangerth [Sat, 30 Nov 2019 04:47:22 +0000 (21:47 -0700)]
Initial version of step-71 for the biharmonic equation.
Wolfgang Bangerth [Tue, 14 Jan 2020 00:28:17 +0000 (17:28 -0700)]
Add a few links to step-6.
David Wells [Mon, 13 Jan 2020 23:53:11 +0000 (18:53 -0500)]
Merge pull request #9310 from bangerth/disentangle
Disentangle the dependency graph some more.
Wolfgang Bangerth [Mon, 13 Jan 2020 23:16:59 +0000 (16:16 -0700)]
Disentangle the dependency graph some more.
Daniel Arndt [Fri, 10 Jan 2020 22:03:01 +0000 (17:03 -0500)]
Fix FESystem move constrcutor
Daniel Arndt [Tue, 7 Jan 2020 14:54:43 +0000 (09:54 -0500)]
Replace Threads::mutex by std::mutex
Wolfgang Bangerth [Mon, 13 Jan 2020 21:05:14 +0000 (14:05 -0700)]
Merge pull request #9304 from krishnakumarg1984/krishna_fix_minor_typo_step6
In step 6 doc, fixes a really minor grammar/typo
Daniel Arndt [Mon, 13 Jan 2020 20:09:09 +0000 (13:09 -0700)]
Merge pull request #9281 from tjhei/github-ci
use github CI for OSX
Krishnakumar Gopalakrishnan [Mon, 13 Jan 2020 19:29:01 +0000 (19:29 +0000)]
In step 6 doc, fixes a really minor grammar/typo
Daniel Arndt [Mon, 13 Jan 2020 18:23:28 +0000 (11:23 -0700)]
Merge pull request #9282 from tjhei/update_git_export
update .gitattributes
Krishnakumar Gopalakrishnan [Mon, 13 Jan 2020 13:38:57 +0000 (13:38 +0000)]
In step 6 results doc, move the header file inclusion sentence to reflect that we need it for Sparse_ILU and not Jacobi preconditioner
Addresses reviewers comments for the PR
Wolfgang Bangerth [Mon, 13 Jan 2020 17:49:03 +0000 (10:49 -0700)]
Merge pull request #9293 from krishnakumarg1984/step6_fixes_krishna
minor grammar fixes to step-6 tutorial doc
Timo Heister [Mon, 13 Jan 2020 16:00:44 +0000 (11:00 -0500)]
GridGenerator::half_hyper_shell warning
- remove unused variable warning in release mode
- document that n_cells is not used
Timo Heister [Fri, 10 Jan 2020 18:27:17 +0000 (13:27 -0500)]
update .gitattributes
- add .github/ and contrib/ci/ and Jenkinsfile to ignore list
- reorder things
Timo Heister [Mon, 13 Jan 2020 13:18:50 +0000 (08:18 -0500)]
Merge pull request #9286 from bangerth/jump-average
Introduce \jump and \average commands to be used in the documentation.
Timo Heister [Mon, 13 Jan 2020 13:18:17 +0000 (08:18 -0500)]
Merge pull request #9289 from peterrum/step18-removeinclude
Remove filtered_iterator include in step-18
Timo Heister [Mon, 13 Jan 2020 13:18:05 +0000 (08:18 -0500)]
Merge pull request #9291 from krishnakumarg1984/krishna_fix_kellyestimator_doc
In the doc for KellyErrorEstimator class, trying to fix couple of doxygen links
Krishnakumar Gopalakrishnan [Sun, 12 Jan 2020 17:01:45 +0000 (17:01 +0000)]
In the doc for KellyErrorEstimator class, trying to fix doxygen links to couple of functions in the GridRefinement namespace
fixes a typo (gradiend) in the documentation of KellyErrorEstimator class
Update include/deal.II/numerics/error_estimator.h
Co-Authored-By: Timo Heister <timo.heister@gmail.com>
Update include/deal.II/numerics/error_estimator.h
Co-Authored-By: Timo Heister <timo.heister@gmail.com>
trying to reindent the pull request
Daniel Arndt [Mon, 13 Jan 2020 06:16:25 +0000 (01:16 -0500)]
Merge pull request #9290 from tjhei/fix_write_vtu_in_parallel_partly_empty
fix write_vtu_in_parallel invalid file if partly empty
David Wells [Sun, 12 Jan 2020 20:39:36 +0000 (15:39 -0500)]
Merge pull request #9295 from krishnakumarg1984/step6_krishna_fix_boundarydoc
fixes stale documentation about boundary_object for hyper_ball function
Krishnakumar Gopalakrishnan [Sun, 12 Jan 2020 20:31:03 +0000 (20:31 +0000)]
Update examples/step-6/step-6.cc
Co-Authored-By: David Wells <drwells@email.unc.edu>
Krishnakumar Gopalakrishnan [Sun, 12 Jan 2020 19:09:23 +0000 (19:09 +0000)]
fixes stale documentation about boundary_object for hyper_ball function
Krishnakumar Gopalakrishnan [Sun, 12 Jan 2020 18:32:35 +0000 (18:32 +0000)]
minor grammar fixes to step-6 tutorial doc
Timo Heister [Sun, 12 Jan 2020 16:32:36 +0000 (11:32 -0500)]
fix write_vtu_in_parallel invalid file if partly empty
Fix generating an invalid vtu file when the first piece written is empty
(this will crash paraview). There is no reason to write empty pieces
anyway, so just skip them.
Peter Munch [Sun, 12 Jan 2020 10:12:50 +0000 (11:12 +0100)]
Remove reference to step-18
Peter Munch [Sun, 12 Jan 2020 08:03:27 +0000 (09:03 +0100)]
Remove filtered_iterator include in step-18
Wolfgang Bangerth [Sat, 11 Jan 2020 04:24:39 +0000 (21:24 -0700)]
Use \jump and \average commands in the documentation.
This makes sure that we can be consistent in how we denote these operators:
single or double brackets/braces; with or without spaces, etc.
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