https://gitweb.dealii.org/ - dealii-svn.git/log

heister [Wed, 27 Mar 2013 03:46:26 +0000 (03:46 +0000)]

switch tests to MPI_InitFinalize (some more to come)

git-svn-id: https://svn.dealii.org/trunk@29054 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 27 Mar 2013 03:33:29 +0000 (03:33 +0000)]

make PETSc tests use MPI_InitFinalize

git-svn-id: https://svn.dealii.org/trunk@29053 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 27 Mar 2013 03:31:17 +0000 (03:31 +0000)]

make MPI_InitFinalize initialize PETSc even if not using MPI

git-svn-id: https://svn.dealii.org/trunk@29052 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 26 Mar 2013 21:33:19 +0000 (21:33 +0000)]

Several more.

git-svn-id: https://svn.dealii.org/trunk@29048 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 26 Mar 2013 20:18:22 +0000 (20:18 +0000)]

PETSc examples work with threading enabled at configure time. Turn off at runtime.

git-svn-id: https://svn.dealii.org/trunk@29047 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 26 Mar 2013 20:17:22 +0000 (20:17 +0000)]

Check at runtime that we do not use multiple threads when using PETSc vectors

git-svn-id: https://svn.dealii.org/trunk@29046 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 26 Mar 2013 20:16:53 +0000 (20:16 +0000)]

Routine to set number of threads of TBB. MPI_InitFinalize by default sets it to 1.

git-svn-id: https://svn.dealii.org/trunk@29045 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 26 Mar 2013 20:14:49 +0000 (20:14 +0000)]

Fix TimerOutput::reset() total time

git-svn-id: https://svn.dealii.org/trunk@29044 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 26 Mar 2013 19:51:19 +0000 (19:51 +0000)]

Fix typo (reported by Yunhuang Zhang).

git-svn-id: https://svn.dealii.org/trunk@29043 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 26 Mar 2013 12:48:08 +0000 (12:48 +0000)]

CMake: Bugfix: Add an INSTALL_NAME_DIR target property to avoid the use of DYLD_LIBRARY_PATH on Mac OS X

git-svn-id: https://svn.dealii.org/trunk@29038 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 25 Mar 2013 15:10:41 +0000 (15:10 +0000)]

CMake: Resolve a cache invalidation problem

git-svn-id: https://svn.dealii.org/trunk@29028 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 25 Mar 2013 14:53:34 +0000 (14:53 +0000)]

Patch by Juan Carlos Araujo Cabarcas: Explain how to use ARPACK as an alternative to SLEPc.

git-svn-id: https://svn.dealii.org/trunk@29027 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 25 Mar 2013 14:10:40 +0000 (14:10 +0000)]

Formatting improvements.

git-svn-id: https://svn.dealii.org/trunk@29023 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 24 Mar 2013 23:22:39 +0000 (23:22 +0000)]

Add a comment.

git-svn-id: https://svn.dealii.org/trunk@29020 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 24 Mar 2013 23:11:14 +0000 (23:11 +0000)]

Make two constructor arguments references.

git-svn-id: https://svn.dealii.org/trunk@29019 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 24 Mar 2013 22:41:12 +0000 (22:41 +0000)]

CMake: Remove unnecessary file globs

git-svn-id: https://svn.dealii.org/trunk@29018 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 24 Mar 2013 20:06:48 +0000 (20:06 +0000)]

CMake: Fix a bunch of typos in ./doc/. This resolves the issue with multiple doxygen runs

git-svn-id: https://svn.dealii.org/trunk@29017 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 24 Mar 2013 16:44:46 +0000 (16:44 +0000)]

CMake: Add librt.so to the link interface of UMFPACK to avoid an underlinkage problem.

git-svn-id: https://svn.dealii.org/trunk@29016 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 24 Mar 2013 16:38:07 +0000 (16:38 +0000)]

Augment documentation.

git-svn-id: https://svn.dealii.org/trunk@29015 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 24 Mar 2013 15:35:39 +0000 (15:35 +0000)]

Fix a typo

git-svn-id: https://svn.dealii.org/trunk@29014 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 24 Mar 2013 13:33:57 +0000 (13:33 +0000)]

CMake: Improve documentation wrt manual overrides

git-svn-id: https://svn.dealii.org/trunk@29013 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 24 Mar 2013 11:04:13 +0000 (11:04 +0000)]

CMake: Bugfix: Print out the component selection as well

git-svn-id: https://svn.dealii.org/trunk@29012 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 24 Mar 2013 10:53:56 +0000 (10:53 +0000)]

CMake: Bugfix in FindTBB.cmake

git-svn-id: https://svn.dealii.org/trunk@29011 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 24 Mar 2013 09:51:22 +0000 (09:51 +0000)]

CMake: Bugfix. Make bundled tbb compile again

git-svn-id: https://svn.dealii.org/trunk@29010 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 24 Mar 2013 09:17:07 +0000 (09:17 +0000)]

CMake: Bugfix, switch the order of includes...

git-svn-id: https://svn.dealii.org/trunk@29009 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 24 Mar 2013 01:34:48 +0000 (01:34 +0000)]

CMake: Bugfix, add SHLIBLD and SHLIBFLAGS back to Make.global_options

git-svn-id: https://svn.dealii.org/trunk@29008 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 24 Mar 2013 01:22:32 +0000 (01:22 +0000)]

CMake: Make includes a bit more robust

git-svn-id: https://svn.dealii.org/trunk@29007 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 24 Mar 2013 00:33:12 +0000 (00:33 +0000)]

CMake: Bugfix

git-svn-id: https://svn.dealii.org/trunk@29006 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sun, 24 Mar 2013 00:09:26 +0000 (00:09 +0000)]

Remove forgotten obsolete file

git-svn-id: https://svn.dealii.org/trunk@29005 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 23 Mar 2013 23:57:36 +0000 (23:57 +0000)]

CMake: Finish CMake documentation

git-svn-id: https://svn.dealii.org/trunk@29004 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 23 Mar 2013 23:57:19 +0000 (23:57 +0000)]

CMake: Bugfixes in configure_boost.cmake

git-svn-id: https://svn.dealii.org/trunk@29003 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 23 Mar 2013 23:57:19 +0000 (23:57 +0000)]

CMake: Remove this little hack

git-svn-id: https://svn.dealii.org/trunk@29002 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 23 Mar 2013 23:57:18 +0000 (23:57 +0000)]

CMake: Print external libraries in the summary

git-svn-id: https://svn.dealii.org/trunk@29001 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 23 Mar 2013 23:57:17 +0000 (23:57 +0000)]

CMake: Fix a TODO in FindTBB.cmake

git-svn-id: https://svn.dealii.org/trunk@29000 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 23 Mar 2013 23:57:16 +0000 (23:57 +0000)]

CMake: Some more documentation and code cleanup

git-svn-id: https://svn.dealii.org/trunk@28999 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 23 Mar 2013 23:57:16 +0000 (23:57 +0000)]

Run some selected tests in the build_tests

git-svn-id: https://svn.dealii.org/trunk@28998 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 22 Mar 2013 21:20:13 +0000 (21:20 +0000)]

benchmark: interactive plot

git-svn-id: https://svn.dealii.org/trunk@28995 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 22 Mar 2013 19:41:17 +0000 (19:41 +0000)]

Document the use configuration of BLAS and LAPACK better.

git-svn-id: https://svn.dealii.org/trunk@28994 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Fri, 22 Mar 2013 15:52:10 +0000 (15:52 +0000)]

Function to instruct SLEPc to exploit symmetry operations.

git-svn-id: https://svn.dealii.org/trunk@28990 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Fri, 22 Mar 2013 14:45:26 +0000 (14:45 +0000)]

Remove 64BIT directive in PETScWrappers. PetscErrorCode is always right.

git-svn-id: https://svn.dealii.org/trunk@28987 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 22 Mar 2013 13:36:35 +0000 (13:36 +0000)]

produce reproducible output

git-svn-id: https://svn.dealii.org/trunk@28985 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 22 Mar 2013 13:35:11 +0000 (13:35 +0000)]

fix two more locations of double to int and remove date from output

git-svn-id: https://svn.dealii.org/trunk@28984 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 22 Mar 2013 02:58:01 +0000 (02:58 +0000)]

fix warning

git-svn-id: https://svn.dealii.org/trunk@28980 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 22 Mar 2013 02:55:41 +0000 (02:55 +0000)]

fix warning

git-svn-id: https://svn.dealii.org/trunk@28979 0785d39b-7218-0410-832d-ea1e28bc413d

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heien [Thu, 21 Mar 2013 20:43:30 +0000 (20:43 +0000)]

Bug fix for HDF5 output, now properly handles processors with 0 patches

git-svn-id: https://svn.dealii.org/trunk@28978 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 21 Mar 2013 18:43:04 +0000 (18:43 +0000)]

add newline at end of file

git-svn-id: https://svn.dealii.org/trunk@28977 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 21 Mar 2013 17:43:29 +0000 (17:43 +0000)]

step-42: do not allocate a fat matrix we are not going to use

git-svn-id: https://svn.dealii.org/trunk@28976 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 21 Mar 2013 17:37:54 +0000 (17:37 +0000)]

step-42: fix formatting and optional command line parameter

git-svn-id: https://svn.dealii.org/trunk@28975 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 21 Mar 2013 17:26:12 +0000 (17:26 +0000)]

fix typo

git-svn-id: https://svn.dealii.org/trunk@28974 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Thu, 21 Mar 2013 15:19:37 +0000 (15:19 +0000)]

try to fix warnings without seeing them

git-svn-id: https://svn.dealii.org/trunk@28971 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 21 Mar 2013 14:26:25 +0000 (14:26 +0000)]

Make compile again.

git-svn-id: https://svn.dealii.org/trunk@28970 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Thu, 21 Mar 2013 14:01:11 +0000 (14:01 +0000)]

change in IterativeInverse

git-svn-id: https://svn.dealii.org/trunk@28969 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Thu, 21 Mar 2013 13:39:10 +0000 (13:39 +0000)]

instantiate DoFInfo for long double

git-svn-id: https://svn.dealii.org/trunk@28968 0785d39b-7218-0410-832d-ea1e28bc413d

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christian.wuelker [Thu, 21 Mar 2013 13:31:44 +0000 (13:31 +0000)]

Test fuer write_svg

git-svn-id: https://svn.dealii.org/trunk@28967 0785d39b-7218-0410-832d-ea1e28bc413d

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christian.wuelker [Thu, 21 Mar 2013 13:27:38 +0000 (13:27 +0000)]

Added GridOut::write_svg

git-svn-id: https://svn.dealii.org/trunk@28966 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 20 Mar 2013 23:27:52 +0000 (23:27 +0000)]

Augment documentation.

git-svn-id: https://svn.dealii.org/trunk@28964 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 20 Mar 2013 17:02:43 +0000 (17:02 +0000)]

fix bug in TimerOutput introduced earlier

git-svn-id: https://svn.dealii.org/trunk@28959 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 20 Mar 2013 15:23:07 +0000 (15:23 +0000)]

use new TimerOutput features

git-svn-id: https://svn.dealii.org/trunk@28958 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 20 Mar 2013 15:22:34 +0000 (15:22 +0000)]

more TimerOutput changes

git-svn-id: https://svn.dealii.org/trunk@28957 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 20 Mar 2013 15:16:03 +0000 (15:16 +0000)]

record changes made

git-svn-id: https://svn.dealii.org/trunk@28956 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 20 Mar 2013 15:13:57 +0000 (15:13 +0000)]

add TimerOutput::reset()

git-svn-id: https://svn.dealii.org/trunk@28955 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 20 Mar 2013 15:13:13 +0000 (15:13 +0000)]

step-42: update timing stuff

git-svn-id: https://svn.dealii.org/trunk@28954 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 20 Mar 2013 12:25:21 +0000 (12:25 +0000)]

More cleanups.

git-svn-id: https://svn.dealii.org/trunk@28953 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 20 Mar 2013 04:00:05 +0000 (04:00 +0000)]

More standardization.

git-svn-id: https://svn.dealii.org/trunk@28952 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 20 Mar 2013 03:58:20 +0000 (03:58 +0000)]

More renaming.

git-svn-id: https://svn.dealii.org/trunk@28951 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 20 Mar 2013 03:56:14 +0000 (03:56 +0000)]

Simplify process.

git-svn-id: https://svn.dealii.org/trunk@28950 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 20 Mar 2013 03:38:11 +0000 (03:38 +0000)]

Use standard names.

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bangerth [Wed, 20 Mar 2013 03:20:45 +0000 (03:20 +0000)]

Use SSOR as preconditioner.

git-svn-id: https://svn.dealii.org/trunk@28948 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 20 Mar 2013 02:03:51 +0000 (02:03 +0000)]

Link to the FAQ page to provide a better explanation of what the ExcInUse
error message actually means. I think every single one of my students has hit
this this semester and not a single one has found the solution herself).

git-svn-id: https://svn.dealii.org/trunk@28947 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 19 Mar 2013 14:35:42 +0000 (14:35 +0000)]

step-42: remove some timingoutput

git-svn-id: https://svn.dealii.org/trunk@28943 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 19 Mar 2013 12:15:51 +0000 (12:15 +0000)]

Update documentation slightly.

git-svn-id: https://svn.dealii.org/trunk@28942 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 19 Mar 2013 12:08:31 +0000 (12:08 +0000)]

Write one section.

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bangerth [Tue, 19 Mar 2013 03:50:23 +0000 (03:50 +0000)]

Switch back to a more interesting case.

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bangerth [Tue, 19 Mar 2013 03:43:39 +0000 (03:43 +0000)]

Verify that the solution is correct.

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bangerth [Tue, 19 Mar 2013 02:32:21 +0000 (02:32 +0000)]

One more place that needed to be made to compile.

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heister [Mon, 18 Mar 2013 23:27:00 +0000 (23:27 +0000)]

fix typos in comments

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bangerth [Mon, 18 Mar 2013 23:19:15 +0000 (23:19 +0000)]

Make more places compile with standard C++98/03.

git-svn-id: https://svn.dealii.org/trunk@28936 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 18 Mar 2013 23:11:22 +0000 (23:11 +0000)]

Add a heat equation solver. Remove the file with surface points that belongs to the previous incarnation of step-26 that was never finished.

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heister [Mon, 18 Mar 2013 22:11:53 +0000 (22:11 +0000)]

fix compilation on old gcc

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heister [Mon, 18 Mar 2013 20:48:12 +0000 (20:48 +0000)]

update step-42 to not need std::unique_ptr

git-svn-id: https://svn.dealii.org/trunk@28933 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 18 Mar 2013 17:54:11 +0000 (17:54 +0000)]

Fix include paths.

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kanschat [Mon, 18 Mar 2013 14:56:33 +0000 (14:56 +0000)]

support long double

git-svn-id: https://svn.dealii.org/trunk@28931 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Mon, 18 Mar 2013 14:56:11 +0000 (14:56 +0000)]

support mixed accuracy preconditioning

git-svn-id: https://svn.dealii.org/trunk@28930 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Mon, 18 Mar 2013 14:32:11 +0000 (14:32 +0000)]

add MinRes option

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bangerth [Sun, 17 Mar 2013 17:55:59 +0000 (17:55 +0000)]

Deprecate the function TimeDependent::end_sweep with an argument indicating the number of threads. Introduce a function without an argument and use TBB facilities to make it parallel as the old one was. Actually introduce a first test for the entire TimeDependent stuff.

git-svn-id: https://svn.dealii.org/trunk@28928 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 17 Mar 2013 17:14:01 +0000 (17:14 +0000)]

Give an example of how to use BLAS/LAPACK.

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bangerth [Sun, 17 Mar 2013 16:16:15 +0000 (16:16 +0000)]

Update output.

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bangerth [Sun, 17 Mar 2013 16:14:20 +0000 (16:14 +0000)]

Update error message.

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bangerth [Sun, 17 Mar 2013 16:12:38 +0000 (16:12 +0000)]

Adjust test output.

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bangerth [Sun, 17 Mar 2013 16:09:23 +0000 (16:09 +0000)]

Update output.

git-svn-id: https://svn.dealii.org/trunk@28923 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 17 Mar 2013 16:02:54 +0000 (16:02 +0000)]

Mention PETSc's optimized mode.

git-svn-id: https://svn.dealii.org/trunk@28922 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 16 Mar 2013 12:30:32 +0000 (12:30 +0000)]

Rename environment variable to DEAL_II_DIFF.

git-svn-id: https://svn.dealii.org/trunk@28921 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 16 Mar 2013 12:28:41 +0000 (12:28 +0000)]

Update. Rename environment variable to DEAL_II_DIFF.

git-svn-id: https://svn.dealii.org/trunk@28920 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 16 Mar 2013 12:14:07 +0000 (12:14 +0000)]

Update.

git-svn-id: https://svn.dealii.org/trunk@28919 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 15 Mar 2013 22:48:53 +0000 (22:48 +0000)]

Adjust output.

git-svn-id: https://svn.dealii.org/trunk@28918 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 15 Mar 2013 20:48:01 +0000 (20:48 +0000)]

Remove code necessary to support PETSc versions prior to 2.2.1. Such old
versions of PETSc have not been supported in a long time.

git-svn-id: https://svn.dealii.org/trunk@28916 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 15 Mar 2013 18:31:03 +0000 (18:31 +0000)]

Allow default construction of FEValuesExtractor objects, but make sure they are then invalid when used.

git-svn-id: https://svn.dealii.org/trunk@28915 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 15 Mar 2013 15:18:43 +0000 (15:18 +0000)]

CMake: Minor documentation cleanup

git-svn-id: https://svn.dealii.org/trunk@28912 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 15 Mar 2013 10:12:46 +0000 (10:12 +0000)]

CMake: Bugfix

git-svn-id: https://svn.dealii.org/trunk@28911 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 15 Mar 2013 09:58:19 +0000 (09:58 +0000)]

CMake: Final cleanup for the MPI stuff

git-svn-id: https://svn.dealii.org/trunk@28910 0785d39b-7218-0410-832d-ea1e28bc413d

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