https://gitweb.dealii.org/ - dealii-svn.git/log

]> https://gitweb.dealii.org/ - dealii-svn.git/log

bangerth [Tue, 16 Jul 2013 21:57:18 +0000 (21:57 +0000)]

Revert it once again. There are many errors that I don't see on my system...

git-svn-id: https://svn.dealii.org/trunk@30021 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 16 Jul 2013 19:45:42 +0000 (19:45 +0000)]

Fix a bug in VectorTools::project.

git-svn-id: https://svn.dealii.org/trunk@30020 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 16 Jul 2013 19:26:17 +0000 (19:26 +0000)]

Properly qualify shared_ptr.

git-svn-id: https://svn.dealii.org/trunk@30019 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 16 Jul 2013 19:15:59 +0000 (19:15 +0000)]

speed up DoF renumbering for distributed DoFHandler

git-svn-id: https://svn.dealii.org/trunk@30018 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 16 Jul 2013 19:08:07 +0000 (19:08 +0000)]

VectorTools::project has worked in 1d for a while already. Test that as well.

git-svn-id: https://svn.dealii.org/trunk@30017 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 16 Jul 2013 18:32:49 +0000 (18:32 +0000)]

fix tests

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bangerth [Tue, 16 Jul 2013 16:53:13 +0000 (16:53 +0000)]

Remove wrong #include.

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bangerth [Tue, 16 Jul 2013 16:51:56 +0000 (16:51 +0000)]

Ignore Eclipse project files in these directories.

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bangerth [Tue, 16 Jul 2013 16:43:55 +0000 (16:43 +0000)]

Final version of the thread-local variant of WorkStream, using multiple scratch objects per thread. The story is in the comments documenting the lists of thread local variables.

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bangerth [Tue, 16 Jul 2013 16:41:19 +0000 (16:41 +0000)]

Final version of the test.

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bangerth [Tue, 16 Jul 2013 16:33:27 +0000 (16:33 +0000)]

Make things compile in C++98 mode as well.

git-svn-id: https://svn.dealii.org/trunk@30011 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 16 Jul 2013 11:55:24 +0000 (11:55 +0000)]

CMake: Improve renaming

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maier [Tue, 16 Jul 2013 11:17:36 +0000 (11:17 +0000)]

CMake: Somehow resolve the cache invalidation problems.

I have no idea why this is actually working...

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maier [Tue, 16 Jul 2013 10:06:51 +0000 (10:06 +0000)]

CMake: Unconditionally mark a lot of variables as adavanced even if the
corresponding library could not be found.

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maier [Tue, 16 Jul 2013 09:49:49 +0000 (09:49 +0000)]

*sigh* CMake is such a pile of ...

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maier [Tue, 16 Jul 2013 09:30:58 +0000 (09:30 +0000)]

Write a small news item for the latest changes

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maier [Tue, 16 Jul 2013 09:30:56 +0000 (09:30 +0000)]

CMake: Make a working C compiler optional. Do not require to have a strict
matching between C compiler and CXX compiler any more

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kanschat [Tue, 16 Jul 2013 08:23:09 +0000 (08:23 +0000)]

make virtual functions softly pure

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heister [Mon, 15 Jul 2013 23:40:32 +0000 (23:40 +0000)]

add to changelog

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heister [Mon, 15 Jul 2013 23:31:59 +0000 (23:31 +0000)]

merge unified linear algebra branch back into mainline

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kanschat [Mon, 15 Jul 2013 09:44:33 +0000 (09:44 +0000)]

change icon name to existing icon

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maier [Sat, 13 Jul 2013 12:39:09 +0000 (12:39 +0000)]

Doc: Unify index.html and development/index.html

Also 30k get.

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maier [Sat, 13 Jul 2013 12:39:08 +0000 (12:39 +0000)]

Doc: Resize navigation bar

Also 30k get.

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maier [Sat, 13 Jul 2013 12:39:08 +0000 (12:39 +0000)]

Doc: Update development/navbar.html

Also 30k get.

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maier [Sat, 13 Jul 2013 12:39:07 +0000 (12:39 +0000)]

Doc: Finish cmake-internals.html

Also 30k get.

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maier [Sat, 13 Jul 2013 12:39:06 +0000 (12:39 +0000)]

Reindent comments in parameter_handler.h

Also 30k get.

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maier [Sat, 13 Jul 2013 12:39:05 +0000 (12:39 +0000)]

Update documentation

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maier [Sat, 13 Jul 2013 12:39:04 +0000 (12:39 +0000)]

CMake: Update documentation

git-svn-id: https://svn.dealii.org/trunk@29994 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 13 Jul 2013 11:37:13 +0000 (11:37 +0000)]

CMake: Fix Trilinos' link interface

git-svn-id: https://svn.dealii.org/trunk@29993 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 13 Jul 2013 11:00:50 +0000 (11:00 +0000)]

CMake: Don't forget to guard librt as well

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maier [Sat, 13 Jul 2013 10:17:06 +0000 (10:17 +0000)]

CMake: Ensure that dynamic/static final linkage of the executable and the corresponding system libraries (shared/static) match

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maier [Sat, 13 Jul 2013 10:08:17 +0000 (10:08 +0000)]

CMake: Split preference for static libraries in its own configuration
toggle

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maier [Sat, 13 Jul 2013 09:14:50 +0000 (09:14 +0000)]

CMake: Cleanup

git-svn-id: https://svn.dealii.org/trunk@29989 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Fri, 12 Jul 2013 23:58:56 +0000 (23:58 +0000)]

CMake: Bugfix: Clean up MPI_${_lang}_LIBRARIES if they are set to "-NOTFOUND".

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heister [Fri, 12 Jul 2013 18:58:21 +0000 (18:58 +0000)]

merge from mainline

git-svn-id: https://svn.dealii.org/branches/branch_unify_linear_algebra@29987 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Fri, 12 Jul 2013 18:25:01 +0000 (18:25 +0000)]

add some timing to step-40

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maier [Fri, 12 Jul 2013 14:33:56 +0000 (14:33 +0000)]

CMake: Add LAPACK/BLAS to the link interface of p4est

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maier [Fri, 12 Jul 2013 12:48:26 +0000 (12:48 +0000)]

CMake: Use "-pthread" as well when determining whether lapack is usable

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bangerth [Fri, 12 Jul 2013 01:10:48 +0000 (01:10 +0000)]

Move 'template <typename T>' to after the class documentation.

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maier [Thu, 11 Jul 2013 22:44:44 +0000 (22:44 +0000)]

CMake: Bugfix: Link static report_features correctly

git-svn-id: https://svn.dealii.org/trunk@29982 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 11 Jul 2013 22:44:42 +0000 (22:44 +0000)]

Bugfix in report_features.cc.in

git-svn-id: https://svn.dealii.org/trunk@29981 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 11 Jul 2013 22:44:41 +0000 (22:44 +0000)]

CMake: Bugfix, use correct order

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maier [Thu, 11 Jul 2013 22:17:28 +0000 (22:17 +0000)]

CMake: Rename "(CMAKE|DEAL_II)_SHARED_" to "DEAL_II_" because these variables are used not just for shared library linkage...

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maier [Thu, 11 Jul 2013 22:17:25 +0000 (22:17 +0000)]

CMake: Add support for fully static linkage

git-svn-id: https://svn.dealii.org/trunk@29978 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 11 Jul 2013 20:44:11 +0000 (20:44 +0000)]

Uniformly indent member variable names.

git-svn-id: https://svn.dealii.org/trunk@29977 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 11 Jul 2013 17:44:31 +0000 (17:44 +0000)]

CMake: Let FindMETIS search for libparmetis as well

git-svn-id: https://svn.dealii.org/trunk@29976 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 11 Jul 2013 17:44:30 +0000 (17:44 +0000)]

CMake: Cleanup

git-svn-id: https://svn.dealii.org/trunk@29975 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 11 Jul 2013 17:23:17 +0000 (17:23 +0000)]

CMake: One more round to get a sane link interface *yay*

git-svn-id: https://svn.dealii.org/trunk@29974 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 11 Jul 2013 16:44:05 +0000 (16:44 +0000)]

CMake: OK, third try

git-svn-id: https://svn.dealii.org/trunk@29973 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 11 Jul 2013 16:22:58 +0000 (16:22 +0000)]

CMake: Fix up some remaining link interfaces

git-svn-id: https://svn.dealii.org/trunk@29972 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 11 Jul 2013 15:36:51 +0000 (15:36 +0000)]

merge from mainline

git-svn-id: https://svn.dealii.org/branches/branch_unify_linear_algebra@29971 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 11 Jul 2013 15:30:35 +0000 (15:30 +0000)]

CMake: Fix link interface for p4est

git-svn-id: https://svn.dealii.org/trunk@29970 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 11 Jul 2013 15:24:20 +0000 (15:24 +0000)]

CMake: Do it correctly

git-svn-id: https://svn.dealii.org/trunk@29969 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Thu, 11 Jul 2013 15:09:08 +0000 (15:09 +0000)]

documentation fixes by Oleh Krehel

git-svn-id: https://svn.dealii.org/trunk@29968 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 11 Jul 2013 14:39:34 +0000 (14:39 +0000)]

Resolve a cache invalidation issue

git-svn-id: https://svn.dealii.org/trunk@29967 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 11 Jul 2013 14:21:04 +0000 (14:21 +0000)]

CMake: Fix link interface for static blas/lapack

git-svn-id: https://svn.dealii.org/trunk@29966 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 11 Jul 2013 13:10:44 +0000 (13:10 +0000)]

CMake: Prefer static libs for boost if available and BUILD_SHARED_LIBS is false

git-svn-id: https://svn.dealii.org/trunk@29965 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 11 Jul 2013 11:52:21 +0000 (11:52 +0000)]

CMake: Prefer static archives if BUILD_SHARED_LIBS is set to off

git-svn-id: https://svn.dealii.org/trunk@29964 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 10 Jul 2013 22:42:23 +0000 (22:42 +0000)]

Bugfix: Fix a compilation issue if DEAL_II_WITH_UMFPACK=FALSE

git-svn-id: https://svn.dealii.org/trunk@29963 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 10 Jul 2013 22:35:08 +0000 (22:35 +0000)]

CMake: Fix a typo

git-svn-id: https://svn.dealii.org/trunk@29962 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 10 Jul 2013 22:29:57 +0000 (22:29 +0000)]

CMAke: Bugfix. Search for petscvariables in the right order

git-svn-id: https://svn.dealii.org/trunk@29961 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 9 Jul 2013 21:39:19 +0000 (21:39 +0000)]

Undo accidental part of previous patch.

git-svn-id: https://svn.dealii.org/trunk@29960 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 9 Jul 2013 21:37:20 +0000 (21:37 +0000)]

Patch by Denis Davydov: Get the tensor extractors working right.

git-svn-id: https://svn.dealii.org/trunk@29959 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 9 Jul 2013 21:28:29 +0000 (21:28 +0000)]

Further tweaks by Denis Davydov and add a test.

git-svn-id: https://svn.dealii.org/trunk@29958 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 9 Jul 2013 14:45:02 +0000 (14:45 +0000)]

More minimizing.

git-svn-id: https://svn.dealii.org/trunk@29957 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 9 Jul 2013 14:38:08 +0000 (14:38 +0000)]

Latest version of the test. Really minimal. Still fails with the WorkStream patches I have locally :-(

git-svn-id: https://svn.dealii.org/trunk@29956 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 8 Jul 2013 19:43:27 +0000 (19:43 +0000)]

Patch by Denis Davydov: Add the missing functions for the Tensor extractors.

git-svn-id: https://svn.dealii.org/trunk@29955 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 8 Jul 2013 18:13:17 +0000 (18:13 +0000)]

Add accessor functions that take a whole set of indices all at once.

git-svn-id: https://svn.dealii.org/trunk@29954 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 8 Jul 2013 14:01:00 +0000 (14:01 +0000)]

Minimal form of the test. This fails with my patches to work_stream.h because we step on some other array's memory...

git-svn-id: https://svn.dealii.org/trunk@29953 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 8 Jul 2013 13:55:30 +0000 (13:55 +0000)]

Fix a bunch of typos in comments, using the script from https://github.com/vlajos/misspell_fixer .

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kronbichler [Mon, 8 Jul 2013 05:54:44 +0000 (05:54 +0000)]

Test case for parallel block vector

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bangerth [Mon, 8 Jul 2013 04:24:31 +0000 (04:24 +0000)]

The testcase is getting shorter and shorter...

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bangerth [Mon, 8 Jul 2013 04:05:23 +0000 (04:05 +0000)]

Yet another, further reduced version.

git-svn-id: https://svn.dealii.org/trunk@29949 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 8 Jul 2013 03:51:51 +0000 (03:51 +0000)]

Yet another version of this test. It should be producing the same result every time, but it doesn't with my current version of work_stream.h.

git-svn-id: https://svn.dealii.org/trunk@29948 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 8 Jul 2013 03:37:55 +0000 (03:37 +0000)]

Revert to a state of the test that really does fail.

git-svn-id: https://svn.dealii.org/trunk@29947 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 8 Jul 2013 02:47:56 +0000 (02:47 +0000)]

Another version which, sadly, shows yet another problem: the fact that Vector::l1_norm() produces different results every time...

git-svn-id: https://svn.dealii.org/trunk@29946 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 8 Jul 2013 02:23:31 +0000 (02:23 +0000)]

A much reduced testcase. Should produce the same number every time, but doesn't.

git-svn-id: https://svn.dealii.org/trunk@29945 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 8 Jul 2013 02:14:30 +0000 (02:14 +0000)]

Remove a dead piece of left-over from an apparently earlier time.

git-svn-id: https://svn.dealii.org/trunk@29944 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 7 Jul 2013 16:07:59 +0000 (16:07 +0000)]

leave comment

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heister [Sun, 7 Jul 2013 16:01:03 +0000 (16:01 +0000)]

maybe fix ConstraintMatrix::set_zero for parallel::distributed::BlockVector

git-svn-id: https://svn.dealii.org/trunk@29942 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 7 Jul 2013 15:47:45 +0000 (15:47 +0000)]

fix test output

git-svn-id: https://svn.dealii.org/trunk@29941 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 7 Jul 2013 15:47:02 +0000 (15:47 +0000)]

fix bug in ConstraintMatrix::set_zero

git-svn-id: https://svn.dealii.org/trunk@29940 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 7 Jul 2013 15:31:15 +0000 (15:31 +0000)]

add test that documents bug in ConstraintMatrix::set_zero

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bangerth [Fri, 5 Jul 2013 23:40:50 +0000 (23:40 +0000)]

Qualify a call to (std::)copy.

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heltai [Thu, 4 Jul 2013 12:38:52 +0000 (12:38 +0000)]

Wrapped MPI_COMM_WORLD definition around an #ifdef. Trilinos already defines this if we are serial, and we get warnings with multiple definitions.

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bangerth [Thu, 4 Jul 2013 03:03:32 +0000 (03:03 +0000)]

I can't believe it still isn't working. It was working just fine on the
laptop, but all sorts of tests are failing again. So obnoxious!!!

git-svn-id: https://svn.dealii.org/trunk@29936 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 4 Jul 2013 03:00:42 +0000 (03:00 +0000)]

Further simplify.

git-svn-id: https://svn.dealii.org/trunk@29935 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 3 Jul 2013 23:50:50 +0000 (23:50 +0000)]

Finally figure out what is necessary to make it work with using thread local
scratch objects, rather than global scratch object: we need thread local
*pointers* to these objects, but the objects and their content need to be in
the global memory space because they may in fact be worked on by other
threads, for example when zeroing out a vector etc.

git-svn-id: https://svn.dealii.org/trunk@29934 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 3 Jul 2013 23:13:31 +0000 (23:13 +0000)]

remove unused functions, clean up usage of explicit

git-svn-id: https://svn.dealii.org/branches/branch_unify_linear_algebra@29933 0785d39b-7218-0410-832d-ea1e28bc413d

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buerg [Wed, 3 Jul 2013 22:40:19 +0000 (22:40 +0000)]

Add test for grid with nonstandard orientated faces for FE_Nedelec<3>. By Alexander Grayver.

git-svn-id: https://svn.dealii.org/trunk@29932 0785d39b-7218-0410-832d-ea1e28bc413d

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buerg [Wed, 3 Jul 2013 22:30:05 +0000 (22:30 +0000)]

Face bug in Nedelec elements for faces with nonstandard orientation.

git-svn-id: https://svn.dealii.org/trunk@29931 0785d39b-7218-0410-832d-ea1e28bc413d

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buerg [Wed, 3 Jul 2013 22:09:52 +0000 (22:09 +0000)]

Remove forgotten line.

git-svn-id: https://svn.dealii.org/trunk@29930 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 3 Jul 2013 16:06:06 +0000 (16:06 +0000)]

Third new test.

git-svn-id: https://svn.dealii.org/trunk@29929 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 3 Jul 2013 16:04:30 +0000 (16:04 +0000)]

Another new test.

git-svn-id: https://svn.dealii.org/trunk@29928 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 3 Jul 2013 16:03:51 +0000 (16:03 +0000)]

New test.

git-svn-id: https://svn.dealii.org/trunk@29927 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 3 Jul 2013 14:35:11 +0000 (14:35 +0000)]

merge from mainline

git-svn-id: https://svn.dealii.org/branches/branch_unify_linear_algebra@29926 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 3 Jul 2013 12:56:01 +0000 (12:56 +0000)]

Count down, not up.

git-svn-id: https://svn.dealii.org/trunk@29925 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 3 Jul 2013 09:01:46 +0000 (09:01 +0000)]

Adapt the first three tests in tests/umfpack to test for the transpose as well.

git-svn-id: https://svn.dealii.org/trunk@29924 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 3 Jul 2013 09:01:45 +0000 (09:01 +0000)]

Implement SparseDirectUMFPACK::Tvmult

git-svn-id: https://svn.dealii.org/trunk@29923 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 3 Jul 2013 09:01:44 +0000 (09:01 +0000)]

Bugfix: Fix a meaningless comparison

"i != -1", where i is an unsigned int is always true - there is no implicit
cast of '-1' to unsigned char. It has to read "i != (unsigned char) -1"

git-svn-id: https://svn.dealii.org/trunk@29922 0785d39b-7218-0410-832d-ea1e28bc413d

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