https://gitweb.dealii.org/ - dealii-svn.git/log

bangerth [Fri, 1 Jul 2011 03:10:05 +0000 (03:10 +0000)]

Fix a problem where we access an element past the end of the array because we
call a function recursively and accidentally step on our own foot.

git-svn-id: https://svn.dealii.org/trunk@23901 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 1 Jul 2011 02:37:39 +0000 (02:37 +0000)]

remove unused variable

git-svn-id: https://svn.dealii.org/trunk@23900 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 1 Jul 2011 02:14:01 +0000 (02:14 +0000)]

Replace wrong loop bounds

git-svn-id: https://svn.dealii.org/trunk@23899 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 1 Jul 2011 00:27:42 +0000 (00:27 +0000)]

OK, that didn't work :-(

git-svn-id: https://svn.dealii.org/trunk@23898 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 1 Jul 2011 00:24:05 +0000 (00:24 +0000)]

Use a better way to copy stuff.

git-svn-id: https://svn.dealii.org/trunk@23897 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 1 Jul 2011 00:14:00 +0000 (00:14 +0000)]

Only access elements of a vector if it is not empty.

git-svn-id: https://svn.dealii.org/trunk@23896 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 1 Jul 2011 00:03:09 +0000 (00:03 +0000)]

Do not access the element-past-the-end of a vector.

git-svn-id: https://svn.dealii.org/trunk@23895 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 30 Jun 2011 23:53:43 +0000 (23:53 +0000)]

Use a more robust version of denoting the null pointer in this context.

git-svn-id: https://svn.dealii.org/trunk@23894 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 30 Jun 2011 23:47:29 +0000 (23:47 +0000)]

Be more careful accessing the data array of a Table object if said Table
object is empty. Also add an assertion in one other place.

git-svn-id: https://svn.dealii.org/trunk@23893 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 30 Jun 2011 23:05:51 +0000 (23:05 +0000)]

Compare iterators from the same container.

git-svn-id: https://svn.dealii.org/trunk@23892 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 30 Jun 2011 23:00:25 +0000 (23:00 +0000)]

Fix another such place.

git-svn-id: https://svn.dealii.org/trunk@23891 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 30 Jun 2011 21:14:12 +0000 (21:14 +0000)]

Don't compute stuff we never use. In particular, don't create variables then
access beyond their end.

git-svn-id: https://svn.dealii.org/trunk@23890 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 30 Jun 2011 21:11:42 +0000 (21:11 +0000)]

Compute the size of a std::vector without dereferencing the end iterator.

git-svn-id: https://svn.dealii.org/trunk@23889 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 30 Jun 2011 21:04:40 +0000 (21:04 +0000)]

Only define preprocessor symbol if not already defined.

git-svn-id: https://svn.dealii.org/trunk@23888 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 30 Jun 2011 12:20:15 +0000 (12:20 +0000)]

Verify that the output that changed with yesterday's fix is correct.

git-svn-id: https://svn.dealii.org/trunk@23887 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 30 Jun 2011 00:01:47 +0000 (00:01 +0000)]

Replace two naked 'throw ExcInternalError()' by the corresponding AssertThrow so that we get location information printed in the output.

git-svn-id: https://svn.dealii.org/trunk@23886 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 29 Jun 2011 23:49:41 +0000 (23:49 +0000)]

Use proper syntax in compile test.

git-svn-id: https://svn.dealii.org/trunk@23885 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 29 Jun 2011 23:37:05 +0000 (23:37 +0000)]

Work around an awkward problem: when using mappings of degree 4, we have enough roundoff accumulating that we get into trouble with constraints that are cyclic. Fix this by introducing a normalization step in the computation of normal vectors when sorting out normal fluxes.

git-svn-id: https://svn.dealii.org/trunk@23884 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 29 Jun 2011 22:18:11 +0000 (22:18 +0000)]

Detect common problem with Sacado_cmath.hpp and link to a solution.

git-svn-id: https://svn.dealii.org/trunk@23883 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 29 Jun 2011 21:16:44 +0000 (21:16 +0000)]

Update one.

git-svn-id: https://svn.dealii.org/trunk@23882 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 29 Jun 2011 20:09:50 +0000 (20:09 +0000)]

Better doxygen markup.

git-svn-id: https://svn.dealii.org/trunk@23881 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 29 Jun 2011 18:22:18 +0000 (18:22 +0000)]

Add a note to a comment.

git-svn-id: https://svn.dealii.org/trunk@23880 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 29 Jun 2011 18:14:25 +0000 (18:14 +0000)]

Only the 3d case is affected.

git-svn-id: https://svn.dealii.org/trunk@23879 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 29 Jun 2011 17:17:08 +0000 (17:17 +0000)]

Reduce test to the minimum.

git-svn-id: https://svn.dealii.org/trunk@23878 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 29 Jun 2011 17:04:32 +0000 (17:04 +0000)]

Auto-detect the Trilinos sub-libs we need to link with and their order.

git-svn-id: https://svn.dealii.org/trunk@23877 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Tue, 28 Jun 2011 18:21:51 +0000 (18:21 +0000)]

remove obsolete keyword

git-svn-id: https://svn.dealii.org/trunk@23876 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Tue, 28 Jun 2011 18:17:53 +0000 (18:17 +0000)]

Header

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bangerth [Tue, 28 Jun 2011 03:37:38 +0000 (03:37 +0000)]

Augment documentation. Add a guarantee about the first shape function that is also tested in the new fe/dgp_01 testcase.

git-svn-id: https://svn.dealii.org/trunk@23874 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 28 Jun 2011 03:21:07 +0000 (03:21 +0000)]

New test.

git-svn-id: https://svn.dealii.org/trunk@23873 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 27 Jun 2011 17:34:23 +0000 (17:34 +0000)]

Work around compiler warnings in boost library.

git-svn-id: https://svn.dealii.org/trunk@23872 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 27 Jun 2011 16:34:39 +0000 (16:34 +0000)]

Fix memory consumption of std::vector<T> with more than 4G.

git-svn-id: https://svn.dealii.org/trunk@23871 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 27 Jun 2011 16:33:52 +0000 (16:33 +0000)]

Fix typo in documentation.

git-svn-id: https://svn.dealii.org/trunk@23870 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 27 Jun 2011 16:33:32 +0000 (16:33 +0000)]

Omit unused variables.

git-svn-id: https://svn.dealii.org/trunk@23869 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 27 Jun 2011 16:32:10 +0000 (16:32 +0000)]

Test ConstraintMatrix::merge() for constraint matrices localized by an IndexSet (same IndexSet on both CM).

git-svn-id: https://svn.dealii.org/trunk@23868 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 27 Jun 2011 16:31:46 +0000 (16:31 +0000)]

Implement ConstraintMatrix::merge() for constraint matrices localized by an IndexSet (same IndexSet on both CM).

git-svn-id: https://svn.dealii.org/trunk@23867 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 26 Jun 2011 21:07:01 +0000 (21:07 +0000)]

add failing testcase for no_normal_flux constraints in 3d with higher order mapping failing.

git-svn-id: https://svn.dealii.org/trunk@23866 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 26 Jun 2011 17:33:12 +0000 (17:33 +0000)]

New test that currently fails.

git-svn-id: https://svn.dealii.org/trunk@23865 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 26 Jun 2011 17:21:24 +0000 (17:21 +0000)]

Make test compile and run. It does abort now, though...

git-svn-id: https://svn.dealii.org/trunk@23864 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 26 Jun 2011 03:18:01 +0000 (03:18 +0000)]

One more test.

git-svn-id: https://svn.dealii.org/trunk@23863 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 26 Jun 2011 03:07:22 +0000 (03:07 +0000)]

Improve error message.

git-svn-id: https://svn.dealii.org/trunk@23862 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 26 Jun 2011 00:19:40 +0000 (00:19 +0000)]

Test works after all -- the deadlock was due to the fact that I called x.l2_norm() only for some processors.

git-svn-id: https://svn.dealii.org/trunk@23861 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 26 Jun 2011 00:04:29 +0000 (00:04 +0000)]

Also set SERVER_BASED_SEARCH to NO.

git-svn-id: https://svn.dealii.org/trunk@23860 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 26 Jun 2011 00:01:40 +0000 (00:01 +0000)]

Set TEMPLATE_RELATIONS to YES.

git-svn-id: https://svn.dealii.org/trunk@23859 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 24 Jun 2011 03:48:46 +0000 (03:48 +0000)]

Add another one.

git-svn-id: https://svn.dealii.org/trunk@23858 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 24 Jun 2011 01:31:49 +0000 (01:31 +0000)]

Add a new test. This one segfaults on my laptop, let's see what it does on the autotester.

git-svn-id: https://svn.dealii.org/trunk@23857 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 24 Jun 2011 01:16:42 +0000 (01:16 +0000)]

Remove static_casts that are now no longer necessary since parallel::distributed::DoFHandler has been merged into the global ::DoFHandler.

git-svn-id: https://svn.dealii.org/trunk@23856 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 24 Jun 2011 01:11:09 +0000 (01:11 +0000)]

Use '-Wl,-rpath,' instead of '-Wl,-rpath ' (note the comma instead of the space). It's quite mysterious how this worked in the first place for so long.

git-svn-id: https://svn.dealii.org/trunk@23855 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 23 Jun 2011 17:36:26 +0000 (17:36 +0000)]

Make our lives a bit easier in counting how many variables we output.

git-svn-id: https://svn.dealii.org/trunk@23854 0785d39b-7218-0410-832d-ea1e28bc413d

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ferguson [Thu, 23 Jun 2011 14:30:20 +0000 (14:30 +0000)]

Add more details to the Refinement During Timesteps section

git-svn-id: https://svn.dealii.org/trunk@23853 0785d39b-7218-0410-832d-ea1e28bc413d

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bonito [Thu, 23 Jun 2011 14:25:59 +0000 (14:25 +0000)]

Added instantiation of PETScWrappers::MPI:Vector in MappingQEulerian

git-svn-id: https://svn.dealii.org/trunk@23852 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 22 Jun 2011 20:03:00 +0000 (20:03 +0000)]

Experiment with adding a search engine to the doxygen pages. It
doesn't quite work on my local machine, so see how it comes out on the
server.

git-svn-id: https://svn.dealii.org/trunk@23851 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 22 Jun 2011 12:44:28 +0000 (12:44 +0000)]

Update documentation in a number of places.

git-svn-id: https://svn.dealii.org/trunk@23850 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 21 Jun 2011 17:31:28 +0000 (17:31 +0000)]

Add something to the documentation.

git-svn-id: https://svn.dealii.org/trunk@23849 0785d39b-7218-0410-832d-ea1e28bc413d

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buerg [Tue, 21 Jun 2011 09:02:33 +0000 (09:02 +0000)]

Remove wrong comment.

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bangerth [Mon, 20 Jun 2011 13:53:43 +0000 (13:53 +0000)]

Augment documentation.

git-svn-id: https://svn.dealii.org/trunk@23847 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 20 Jun 2011 13:41:29 +0000 (13:41 +0000)]

One more.

git-svn-id: https://svn.dealii.org/trunk@23846 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 20 Jun 2011 13:23:08 +0000 (13:23 +0000)]

Add a master's thesis.

git-svn-id: https://svn.dealii.org/trunk@23845 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Sat, 18 Jun 2011 03:32:33 +0000 (03:32 +0000)]

remove obsolete constructor

git-svn-id: https://svn.dealii.org/trunk@23844 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 17 Jun 2011 23:23:15 +0000 (23:23 +0000)]

undo erroneous commit

git-svn-id: https://svn.dealii.org/trunk@23843 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 17 Jun 2011 23:17:04 +0000 (23:17 +0000)]

test permutation in RelaxationBlock

git-svn-id: https://svn.dealii.org/trunk@23842 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 17 Jun 2011 23:15:54 +0000 (23:15 +0000)]

fix order in SSOR

git-svn-id: https://svn.dealii.org/trunk@23841 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 17 Jun 2011 22:26:30 +0000 (22:26 +0000)]

implement ADI, awaits testing

git-svn-id: https://svn.dealii.org/trunk@23840 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Fri, 17 Jun 2011 21:45:56 +0000 (21:45 +0000)]

stop copying BlockList

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kanschat [Fri, 17 Jun 2011 21:41:21 +0000 (21:41 +0000)]

push block list into AdditionalData

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kanschat [Fri, 17 Jun 2011 21:40:48 +0000 (21:40 +0000)]

change order of initialization

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kanschat [Fri, 17 Jun 2011 21:35:44 +0000 (21:35 +0000)]

test for correct size of permutation vector and add documentation

git-svn-id: https://svn.dealii.org/trunk@23836 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 17 Jun 2011 19:55:32 +0000 (19:55 +0000)]

New function GridGenerator::merge_triangulations.

git-svn-id: https://svn.dealii.org/trunk@23835 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 17 Jun 2011 19:55:07 +0000 (19:55 +0000)]

New function GridGenerator::merge_triangulations.

git-svn-id: https://svn.dealii.org/trunk@23834 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 17 Jun 2011 18:01:27 +0000 (18:01 +0000)]

Add Timo's PhD thesis.

git-svn-id: https://svn.dealii.org/trunk@23833 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 17 Jun 2011 18:00:30 +0000 (18:00 +0000)]

Fix spelling of name.

git-svn-id: https://svn.dealii.org/trunk@23832 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 17 Jun 2011 16:17:33 +0000 (16:17 +0000)]

Augment documentation for a case that two students have independently gotten wrong in the last two days.

git-svn-id: https://svn.dealii.org/trunk@23831 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 16 Jun 2011 20:17:21 +0000 (20:17 +0000)]

Add one.

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bangerth [Thu, 16 Jun 2011 20:17:08 +0000 (20:17 +0000)]

Check for a couple more C++11 features.

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bangerth [Thu, 16 Jun 2011 20:04:42 +0000 (20:04 +0000)]

Add comment.

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heister [Thu, 16 Jun 2011 14:56:31 +0000 (14:56 +0000)]

fix typo in doc.

git-svn-id: https://svn.dealii.org/trunk@23827 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 15 Jun 2011 21:38:03 +0000 (21:38 +0000)]

Add one.

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bangerth [Wed, 15 Jun 2011 21:16:22 +0000 (21:16 +0000)]

One more.

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bangerth [Wed, 15 Jun 2011 20:38:38 +0000 (20:38 +0000)]

Fix year.

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bangerth [Wed, 15 Jun 2011 20:38:02 +0000 (20:38 +0000)]

Update one.

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heister [Wed, 15 Jun 2011 19:11:35 +0000 (19:11 +0000)]

step-32: fix error resulting in some settings being ignored in parameter file (conservative pressure, element order).

git-svn-id: https://svn.dealii.org/trunk@23822 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 15 Jun 2011 03:28:55 +0000 (03:28 +0000)]

Change suggested by Max Jensen: make clean shouldn't remove the TBB libraries. That's what make distclean is there for.

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bangerth [Wed, 15 Jun 2011 03:22:23 +0000 (03:22 +0000)]

Fix a typo pointed out by Max Jensen.

git-svn-id: https://svn.dealii.org/trunk@23820 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 14 Jun 2011 03:41:18 +0000 (03:41 +0000)]

Make compile with older compilers.

git-svn-id: https://svn.dealii.org/trunk@23819 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 13 Jun 2011 22:52:13 +0000 (22:52 +0000)]

Remove accidentally included file :-(

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bangerth [Mon, 13 Jun 2011 22:35:57 +0000 (22:35 +0000)]

Implement serialization of DoFHandler objects.

git-svn-id: https://svn.dealii.org/trunk@23817 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 13 Jun 2011 20:31:28 +0000 (20:31 +0000)]

Make things work with objects that aren't copyable.

git-svn-id: https://svn.dealii.org/trunk@23816 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 13 Jun 2011 18:28:57 +0000 (18:28 +0000)]

Yet one more test.

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bangerth [Mon, 13 Jun 2011 18:18:37 +0000 (18:18 +0000)]

Adjust one test. Add another.

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bangerth [Mon, 13 Jun 2011 18:13:44 +0000 (18:13 +0000)]

New test.

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bangerth [Mon, 13 Jun 2011 18:06:08 +0000 (18:06 +0000)]

Rename one test. Create another.

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bangerth [Mon, 13 Jun 2011 18:01:04 +0000 (18:01 +0000)]

Minor adjustment.

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bangerth [Mon, 13 Jun 2011 17:56:14 +0000 (17:56 +0000)]

Two new tests.

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bangerth [Mon, 13 Jun 2011 17:52:28 +0000 (17:52 +0000)]

Compare pointers for equality by the object pointed to.

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bangerth [Mon, 13 Jun 2011 03:40:24 +0000 (03:40 +0000)]

New test.

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bangerth [Mon, 13 Jun 2011 03:21:44 +0000 (03:21 +0000)]

Improve test a bit.

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bangerth [Sun, 12 Jun 2011 23:15:47 +0000 (23:15 +0000)]

Reindent some parts.

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heltai [Fri, 10 Jun 2011 10:13:26 +0000 (10:13 +0000)]

Added instantiations for boundary extraction in codim one

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young [Fri, 10 Jun 2011 10:00:11 +0000 (10:00 +0000)]

Fix seeking boundary dofs

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bangerth [Fri, 10 Jun 2011 06:22:22 +0000 (06:22 +0000)]

Undo previous patch: the flag was used after all (in the .cc file, which I
forgot existed) but not initialized. Initialize it now.

git-svn-id: https://svn.dealii.org/trunk@23803 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 10 Jun 2011 06:05:08 +0000 (06:05 +0000)]

Remove a variable that isn't used and that, as noted by the triangulation
serialization test, wasn't initialized.

git-svn-id: https://svn.dealii.org/trunk@23802 0785d39b-7218-0410-832d-ea1e28bc413d

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