Some more documentation

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31151 0785d39b-7218-0410-832d-ea1e28bc413d

First part of documentation

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31150 0785d39b-7218-0410-832d-ea1e28bc413d

Doc: Update CMake documentation. Add a section about configuration and
building, reflect recent changes

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31148 0785d39b-7218-0410-832d-ea1e28bc413d

Doc: Rearrange two paragraphs

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31147 0785d39b-7218-0410-832d-ea1e28bc413d

Update readme on Windows support and minimal gcc version

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31146 0785d39b-7218-0410-832d-ea1e28bc413d

Merge trunk into branch_port_the_testsuite

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31145 0785d39b-7218-0410-832d-ea1e28bc413d

Make clang happy

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31142 0785d39b-7218-0410-832d-ea1e28bc413d

Add a strangely missing AssertThrow.

git-svn-id: https://svn.dealii.org/trunk@31139 0785d39b-7218-0410-832d-ea1e28bc413d

Print a detailed info message

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31135 0785d39b-7218-0410-832d-ea1e28bc413d

Last changes for the day. Good progress :-)

git-svn-id: https://svn.dealii.org/trunk@31132 0785d39b-7218-0410-832d-ea1e28bc413d

More documentation.

git-svn-id: https://svn.dealii.org/trunk@31131 0785d39b-7218-0410-832d-ea1e28bc413d

More documentation.

git-svn-id: https://svn.dealii.org/trunk@31130 0785d39b-7218-0410-832d-ea1e28bc413d

Update TODO

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31129 0785d39b-7218-0410-832d-ea1e28bc413d

Only run these tests if functionparser is available

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31128 0785d39b-7218-0410-832d-ea1e28bc413d

Small Bugfixes and Cleanup

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31127 0785d39b-7218-0410-832d-ea1e28bc413d

Proper fix, some final rearrangement.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31126 0785d39b-7218-0410-832d-ea1e28bc413d

Make run again in parallel.

git-svn-id: https://svn.dealii.org/trunk@31125 0785d39b-7218-0410-832d-ea1e28bc413d

Remove unused variables.

git-svn-id: https://svn.dealii.org/trunk@31124 0785d39b-7218-0410-832d-ea1e28bc413d

Undo 31119 and fix it by doing the same thing in debug and release mode.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31123 0785d39b-7218-0410-832d-ea1e28bc413d

better way to fix release mode tests

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31122 0785d39b-7218-0410-832d-ea1e28bc413d

fix test in release mode

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31121 0785d39b-7218-0410-832d-ea1e28bc413d

fix test in release mode

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31120 0785d39b-7218-0410-832d-ea1e28bc413d

test has different output in release mode

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31119 0785d39b-7218-0410-832d-ea1e28bc413d

Some compilers apparently want to have a full declaration of ConstraintMatrix
if they see it in a default argument.

git-svn-id: https://svn.dealii.org/trunk@31118 0785d39b-7218-0410-832d-ea1e28bc413d

Qualify strcpy with std::

git-svn-id: https://svn.dealii.org/trunk@31117 0785d39b-7218-0410-832d-ea1e28bc413d

Quick fix

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31116 0785d39b-7218-0410-832d-ea1e28bc413d

Improve exception messages

git-svn-id: https://svn.dealii.org/trunk@31115 0785d39b-7218-0410-832d-ea1e28bc413d

Work around a POSIX violation.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31114 0785d39b-7218-0410-832d-ea1e28bc413d

Remove obsolete file

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31113 0785d39b-7218-0410-832d-ea1e28bc413d

Port new tests

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31112 0785d39b-7218-0410-832d-ea1e28bc413d

Merge trunk into branch_port_the_testsuite

Conflicts:
tests/deal.II/grid_tools_05.output
tests/deal.II/grid_tools_05/cmp/generic

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31111 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix

git-svn-id: https://svn.dealii.org/trunk@31110 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: resolve issue 105

git-svn-id: https://svn.dealii.org/trunk@31109 0785d39b-7218-0410-832d-ea1e28bc413d

Clear buffer at the end of the program.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31108 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Only include libparmetis to the link interface if its likely that it belongs to the metis library..

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31107 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Remove obsolete code

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31106 0785d39b-7218-0410-832d-ea1e28bc413d

Rename a few variables. Initialize vectors with vector sets and communicators, rather than other vectors, to make clear that the vector is not in fact copied, and to make it clearer what index set is being used.

git-svn-id: https://svn.dealii.org/trunk@31105 0785d39b-7218-0410-832d-ea1e28bc413d

Remove file accidentally added.

git-svn-id: https://svn.dealii.org/trunk@31104 0785d39b-7218-0410-832d-ea1e28bc413d

Remove one variable whose value is always equal to another.

git-svn-id: https://svn.dealii.org/trunk@31103 0785d39b-7218-0410-832d-ea1e28bc413d

Remove one variable whose value is always equal to another.

git-svn-id: https://svn.dealii.org/trunk@31102 0785d39b-7218-0410-832d-ea1e28bc413d

fix script

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31101 0785d39b-7218-0410-832d-ea1e28bc413d

Correct output for now higher precision.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31100 0785d39b-7218-0410-832d-ea1e28bc413d

fix test: release mode does not sort indices for performance reasons

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31099 0785d39b-7218-0410-832d-ea1e28bc413d

change metis test output. probably due to newer metis version

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31098 0785d39b-7218-0410-832d-ea1e28bc413d

fix test

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31096 0785d39b-7218-0410-832d-ea1e28bc413d

do a todo - use PetscReal where real_type is needed.

git-svn-id: https://svn.dealii.org/trunk@31095 0785d39b-7218-0410-832d-ea1e28bc413d

Some more tests whose outputs have changed.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31094 0785d39b-7218-0410-832d-ea1e28bc413d

Commit output files that have mysteriously changed on the branch.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31091 0785d39b-7218-0410-832d-ea1e28bc413d

Commit output files that have mysteriously changed on the branch.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31088 0785d39b-7218-0410-832d-ea1e28bc413d

Set default problem type for SLEPc - this should be the GNHEP.

git-svn-id: https://svn.dealii.org/trunk@31084 0785d39b-7218-0410-832d-ea1e28bc413d

grouping and repeat header

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31082 0785d39b-7218-0410-832d-ea1e28bc413d

add comment

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31081 0785d39b-7218-0410-832d-ea1e28bc413d

optional argument for makereport.py: branch name

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31080 0785d39b-7218-0410-832d-ea1e28bc413d

Remove obsolete directories

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31079 0785d39b-7218-0410-832d-ea1e28bc413d

add to changelog

git-svn-id: https://svn.dealii.org/trunk@31078 0785d39b-7218-0410-832d-ea1e28bc413d

do not use n_default_threads but n_threads()

git-svn-id: https://svn.dealii.org/trunk@31077 0785d39b-7218-0410-832d-ea1e28bc413d

replace n_default_threads by n_threads()

git-svn-id: https://svn.dealii.org/trunk@31076 0785d39b-7218-0410-832d-ea1e28bc413d

leave some comments and todos

git-svn-id: https://svn.dealii.org/trunk@31075 0785d39b-7218-0410-832d-ea1e28bc413d

do not use n_default_threads

git-svn-id: https://svn.dealii.org/trunk@31074 0785d39b-7218-0410-832d-ea1e28bc413d

introduce new n_threads(), deprecate n_default_threads

git-svn-id: https://svn.dealii.org/trunk@31073 0785d39b-7218-0410-832d-ea1e28bc413d

remove references to n_default_threads() in error_estimator.h that are ignored anyway.

git-svn-id: https://svn.dealii.org/trunk@31072 0785d39b-7218-0410-832d-ea1e28bc413d

only use TBB in workstream if we are allowed to use more than one thread

git-svn-id: https://svn.dealii.org/trunk@31071 0785d39b-7218-0410-832d-ea1e28bc413d

Now when WorkStream uses graph coloring and that there are not enough elements in a color, the elements are aggregated and copied serially.

git-svn-id: https://svn.dealii.org/trunk@31070 0785d39b-7218-0410-832d-ea1e28bc413d

Make it compile.

git-svn-id: https://svn.dealii.org/trunk@31069 0785d39b-7218-0410-832d-ea1e28bc413d

Slightly more documentation. Leave a few TODOs in the introduction.

git-svn-id: https://svn.dealii.org/trunk@31068 0785d39b-7218-0410-832d-ea1e28bc413d

Cherry-pick revisions 31065 and 31066 from branch_port_the_testsuite

git-svn-id: https://svn.dealii.org/trunk@31067 0785d39b-7218-0410-832d-ea1e28bc413d

Finally.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31066 0785d39b-7218-0410-832d-ea1e28bc413d

Remove obosolete test, rename remaining ones, fix output

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31065 0785d39b-7218-0410-832d-ea1e28bc413d

Port the distributed periodicity test, add missing template instantiation

git-svn-id: https://svn.dealii.org/trunk@31064 0785d39b-7218-0410-832d-ea1e28bc413d

Port grid_tools_05.cc test to collect_periodic_faces

git-svn-id: https://svn.dealii.org/trunk@31063 0785d39b-7218-0410-832d-ea1e28bc413d

Port the distributed periodicity test, add missing template instantiation

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31062 0785d39b-7218-0410-832d-ea1e28bc413d

Port grid_tools_05.cc test to collect_periodic_faces

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31061 0785d39b-7218-0410-832d-ea1e28bc413d

Suppress warnings of the following kind:
..................
/.../deal.II/source/numerics/matrix_tools.cc(2088): warning #2536: type qualifiers are meaningless here

                  bool (*comp)(const typename SparseMatrix<number>::iterator::value_type p,
                               ^
..................
Avoiding the 'const' here is not always completely possible in
template contexts, depending on whether 'value_type' already
has the 'const' in it or not.

git-svn-id: https://svn.dealii.org/trunk@31060 0785d39b-7218-0410-832d-ea1e28bc413d

Improve error message.

git-svn-id: https://svn.dealii.org/trunk@31059 0785d39b-7218-0410-832d-ea1e28bc413d

Fix a bug in graph coloring and add a test for it.

git-svn-id: https://svn.dealii.org/trunk@31058 0785d39b-7218-0410-832d-ea1e28bc413d

Link in step-51 tutorial program.

git-svn-id: https://svn.dealii.org/trunk@31057 0785d39b-7218-0410-832d-ea1e28bc413d

Merge trunk into branch_port_the_testsuite

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31056 0785d39b-7218-0410-832d-ea1e28bc413d

Do some operations in parallel on tasks.

git-svn-id: https://svn.dealii.org/trunk@31055 0785d39b-7218-0410-832d-ea1e28bc413d

Work around an issue in a copy constructor we needed for C++11 compatibility and Intel's ICC.

git-svn-id: https://svn.dealii.org/trunk@31054 0785d39b-7218-0410-832d-ea1e28bc413d

Merge trunk into branch_port_the_testsuite

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31053 0785d39b-7218-0410-832d-ea1e28bc413d

Take over revisions 31045 - 31051 from branch_port_the_testsuite

Cleanup GridTools::collect_periodic_*:

 - Remove GridTools::collect_periodic_face_pairs
 - Unify interface for remaining GridTools::collect_periodic_faces
 - Remove deprecated functions that aren't even released
 - Bugfix: Instantiate collect_periodic_faces, this resolves a compilation
   issue with icc

git-svn-id: https://svn.dealii.org/trunk@31052 0785d39b-7218-0410-832d-ea1e28bc413d

... and the second part

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31051 0785d39b-7218-0410-832d-ea1e28bc413d

GridTools::collect_periodic_faces: Port back to "const int" for the direction

It is way too painful to workaround the compiler warnings a "const
unsigned int" produces

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31050 0785d39b-7218-0410-832d-ea1e28bc413d

Next try ;-)

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31049 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Instantiate...

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31048 0785d39b-7218-0410-832d-ea1e28bc413d

Fix a couple of assertions.

git-svn-id: https://svn.dealii.org/trunk@31047 0785d39b-7218-0410-832d-ea1e28bc413d

Remove obsolete instantiation

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31046 0785d39b-7218-0410-832d-ea1e28bc413d

Cleanup GridTools::collect_periodic_*:

 - Remove GridTools::collect_periodic_face_pairs
 - Unify interface for remaining GridTools::collect_periodic_faces
 - Remove deprecated functions that aren't even released

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31045 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Link in Intel support libraries dynamically (when not building a static executable)

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31044 0785d39b-7218-0410-832d-ea1e28bc413d

Disable warning 327 for Intel compilers. This leads to (correct)
warnings of the kind

File: source/fe/fe_values.cc Line: 430

/.../deal.II/source/fe/fe_values.cc(430): warning #327: NULL reference is not allowed

      fe_values(*static_cast<dealii::FEValuesBase<dim, spacedim>*> (0)),
                ^
          detected during instantiation of "dealii::FEValuesViews::Tensor<2, dim, spacedim>::Tensor() [with dim=1, spacedim=1]" at line 76 of "/usr/include/c++/4.6/bits/stl_construct.h"

But we'd like to use this construct anyway.

git-svn-id: https://svn.dealii.org/trunk@31043 0785d39b-7218-0410-832d-ea1e28bc413d

Merge once more from mainline.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31042 0785d39b-7218-0410-832d-ea1e28bc413d

Provide a copy constructor.

git-svn-id: https://svn.dealii.org/trunk@31041 0785d39b-7218-0410-832d-ea1e28bc413d

Merge trunk into branch_port_the_testsuite

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31039 0785d39b-7218-0410-832d-ea1e28bc413d

Submit more lines around an error, add CTEST_EXTRA_COVERAGE_GLOB

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31038 0785d39b-7218-0410-832d-ea1e28bc413d

Leave a TODO.

git-svn-id: https://svn.dealii.org/trunk@31037 0785d39b-7218-0410-832d-ea1e28bc413d

Add a copy constructor in hopes of making Intel's ICC happy.

git-svn-id: https://svn.dealii.org/trunk@31036 0785d39b-7218-0410-832d-ea1e28bc413d

Merge again from mainline.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31034 0785d39b-7218-0410-832d-ea1e28bc413d

Suppress output to console.

git-svn-id: https://svn.dealii.org/trunk@31033 0785d39b-7218-0410-832d-ea1e28bc413d

Move declaration of std::vector out of a loop.

git-svn-id: https://svn.dealii.org/trunk@31032 0785d39b-7218-0410-832d-ea1e28bc413d

Move declaration of std::vector out of loop.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31031 0785d39b-7218-0410-832d-ea1e28bc413d