Add version information for mumps, tbb and umfpack

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31209 0785d39b-7218-0410-832d-ea1e28bc413d

Rename (setup|clean|prune)_test to (setup|clean|prune)_tests

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31207 0785d39b-7218-0410-832d-ea1e28bc413d

Remove unnecessary template qualifier that icc chokes on

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31200 0785d39b-7218-0410-832d-ea1e28bc413d

Add missing template instantiations

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31199 0785d39b-7218-0410-832d-ea1e28bc413d

Merge trunk into branch_port_the_testsuite

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31198 0785d39b-7218-0410-832d-ea1e28bc413d

Disable the "fail" and "a-framework" categories for tests

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31197 0785d39b-7218-0410-832d-ea1e28bc413d

Add a Nightly branch

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31196 0785d39b-7218-0410-832d-ea1e28bc413d

Use WorkStream instead of Thread in DerivativeApproximation::approximate_derivative.

git-svn-id: https://svn.dealii.org/trunk@31195 0785d39b-7218-0410-832d-ea1e28bc413d

Refactor test layout: Move all relevant parts of the new testsuite to the source directory so that it can still be run if ./tests is unavailable

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31194 0785d39b-7218-0410-832d-ea1e28bc413d

Reactivate -O2 for icc-14*

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31193 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31192 0785d39b-7218-0410-832d-ea1e28bc413d

Replace Threads by WorkStream in dof_tools_constraints.cc

git-svn-id: https://svn.dealii.org/trunk@31191 0785d39b-7218-0410-832d-ea1e28bc413d

Remove test. The functionality of this test can not be verified if we work in directories other than the source directory since there we don't know anything about the file system layout.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31190 0785d39b-7218-0410-832d-ea1e28bc413d

Make other necessary adjustments.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31189 0785d39b-7218-0410-832d-ea1e28bc413d

Fix search path. again.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31188 0785d39b-7218-0410-832d-ea1e28bc413d

Remove top lines with absolute paths.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31187 0785d39b-7218-0410-832d-ea1e28bc413d

Fix search path.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31186 0785d39b-7218-0410-832d-ea1e28bc413d

Rework.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31185 0785d39b-7218-0410-832d-ea1e28bc413d

Only set TMPDIR if it isn't already set.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31184 0785d39b-7218-0410-832d-ea1e28bc413d

Fix typo.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31183 0785d39b-7218-0410-832d-ea1e28bc413d

Doc: Introduce two more links and regroup "Home" in the navbar

git-svn-id: https://svn.dealii.org/trunk@31182 0785d39b-7218-0410-832d-ea1e28bc413d

Merge from mainline.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31181 0785d39b-7218-0410-832d-ea1e28bc413d

take over r31179 to mainline

git-svn-id: https://svn.dealii.org/trunk@31180 0785d39b-7218-0410-832d-ea1e28bc413d

check return value of MPI_File_open

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31179 0785d39b-7218-0410-832d-ea1e28bc413d

Remove outdated svn:ignore.

git-svn-id: https://svn.dealii.org/trunk@31178 0785d39b-7218-0410-832d-ea1e28bc413d

Rework.

git-svn-id: https://svn.dealii.org/trunk@31177 0785d39b-7218-0410-832d-ea1e28bc413d

Link to appropriate tag files.

git-svn-id: https://svn.dealii.org/trunk@31176 0785d39b-7218-0410-832d-ea1e28bc413d

Slightly reword top note.

git-svn-id: https://svn.dealii.org/trunk@31175 0785d39b-7218-0410-832d-ea1e28bc413d

Rework.

git-svn-id: https://svn.dealii.org/trunk@31174 0785d39b-7218-0410-832d-ea1e28bc413d

Update some of the information at the bottom. The link to DEAL no
longer works, so delete it.

git-svn-id: https://svn.dealii.org/trunk@31173 0785d39b-7218-0410-832d-ea1e28bc413d

add test for write_vtu_in_parallel

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31172 0785d39b-7218-0410-832d-ea1e28bc413d

Improve error message.

git-svn-id: https://svn.dealii.org/trunk@31171 0785d39b-7218-0410-832d-ea1e28bc413d

Release mutex on the same thread that acquired it, to satisfy POSIX requirements.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31170 0785d39b-7218-0410-832d-ea1e28bc413d

Run second part of test only if it's different from the first. Adjust test output.

git-svn-id: https://svn.dealii.org/trunk@31169 0785d39b-7218-0410-832d-ea1e28bc413d

Implement bilinear interpolation in a much faster way.

git-svn-id: https://svn.dealii.org/trunk@31168 0785d39b-7218-0410-832d-ea1e28bc413d

No longer output the residual to output files.

git-svn-id: https://svn.dealii.org/trunk@31167 0785d39b-7218-0410-832d-ea1e28bc413d

Compute locally owned active set as intersection of two sets.

git-svn-id: https://svn.dealii.org/trunk@31166 0785d39b-7218-0410-832d-ea1e28bc413d

enhance SparseMatrix documentation

git-svn-id: https://svn.dealii.org/trunk@31165 0785d39b-7218-0410-832d-ea1e28bc413d

Minor adjustments.

git-svn-id: https://svn.dealii.org/trunk@31164 0785d39b-7218-0410-832d-ea1e28bc413d

Patch by Mayank Subharwal and Andreas Putz: Make GridIn read VTK files as well.

git-svn-id: https://svn.dealii.org/trunk@31163 0785d39b-7218-0410-832d-ea1e28bc413d

Search first for the file with its complete given name. I.e., if someone
searches for <mesh.vtk> with additional suffix <.vtk>, then still find the
file if it exists before trying <mesh.vtk.vtk>.

git-svn-id: https://svn.dealii.org/trunk@31162 0785d39b-7218-0410-832d-ea1e28bc413d

Rewrite in parts.

git-svn-id: https://svn.dealii.org/trunk@31161 0785d39b-7218-0410-832d-ea1e28bc413d

Remove extraneous space.

git-svn-id: https://svn.dealii.org/trunk@31160 0785d39b-7218-0410-832d-ea1e28bc413d

Link in step-42.

git-svn-id: https://svn.dealii.org/trunk@31159 0785d39b-7218-0410-832d-ea1e28bc413d

Update svn:ignore.

git-svn-id: https://svn.dealii.org/trunk@31158 0785d39b-7218-0410-832d-ea1e28bc413d

Finish documenting.

git-svn-id: https://svn.dealii.org/trunk@31157 0785d39b-7218-0410-832d-ea1e28bc413d

Comment on solve_newton().

git-svn-id: https://svn.dealii.org/trunk@31155 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Pick up the Fortran interface for lapack correctly

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31154 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: build_tests should be recompiled if the underlying library changes...

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31153 0785d39b-7218-0410-832d-ea1e28bc413d

Fix a bug introduced in the previous version.

git-svn-id: https://svn.dealii.org/trunk@31152 0785d39b-7218-0410-832d-ea1e28bc413d

Some more documentation

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31151 0785d39b-7218-0410-832d-ea1e28bc413d

First part of documentation

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31150 0785d39b-7218-0410-832d-ea1e28bc413d

Switch Assert to AssertThrow where a PETScInternalError can occur.

git-svn-id: https://svn.dealii.org/trunk@31149 0785d39b-7218-0410-832d-ea1e28bc413d

Doc: Update CMake documentation. Add a section about configuration and
building, reflect recent changes

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31148 0785d39b-7218-0410-832d-ea1e28bc413d

Doc: Rearrange two paragraphs

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31147 0785d39b-7218-0410-832d-ea1e28bc413d

Update readme on Windows support and minimal gcc version

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31146 0785d39b-7218-0410-832d-ea1e28bc413d

Merge trunk into branch_port_the_testsuite

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31145 0785d39b-7218-0410-832d-ea1e28bc413d

Move forward.

git-svn-id: https://svn.dealii.org/trunk@31144 0785d39b-7218-0410-832d-ea1e28bc413d

add Stephan's paper

git-svn-id: https://svn.dealii.org/trunk@31143 0785d39b-7218-0410-832d-ea1e28bc413d

Make clang happy

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31142 0785d39b-7218-0410-832d-ea1e28bc413d

Indent.

git-svn-id: https://svn.dealii.org/trunk@31141 0785d39b-7218-0410-832d-ea1e28bc413d

Add a strangely missing AssertThrow.

git-svn-id: https://svn.dealii.org/trunk@31139 0785d39b-7218-0410-832d-ea1e28bc413d

Print a detailed info message

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31135 0785d39b-7218-0410-832d-ea1e28bc413d

Last changes for the day. Good progress :-)

git-svn-id: https://svn.dealii.org/trunk@31132 0785d39b-7218-0410-832d-ea1e28bc413d

More documentation.

git-svn-id: https://svn.dealii.org/trunk@31131 0785d39b-7218-0410-832d-ea1e28bc413d

More documentation.

git-svn-id: https://svn.dealii.org/trunk@31130 0785d39b-7218-0410-832d-ea1e28bc413d

Update TODO

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31129 0785d39b-7218-0410-832d-ea1e28bc413d

Only run these tests if functionparser is available

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31128 0785d39b-7218-0410-832d-ea1e28bc413d

Small Bugfixes and Cleanup

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31127 0785d39b-7218-0410-832d-ea1e28bc413d

Proper fix, some final rearrangement.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31126 0785d39b-7218-0410-832d-ea1e28bc413d

Make run again in parallel.

git-svn-id: https://svn.dealii.org/trunk@31125 0785d39b-7218-0410-832d-ea1e28bc413d

Remove unused variables.

git-svn-id: https://svn.dealii.org/trunk@31124 0785d39b-7218-0410-832d-ea1e28bc413d

Undo 31119 and fix it by doing the same thing in debug and release mode.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31123 0785d39b-7218-0410-832d-ea1e28bc413d

better way to fix release mode tests

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31122 0785d39b-7218-0410-832d-ea1e28bc413d

fix test in release mode

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31121 0785d39b-7218-0410-832d-ea1e28bc413d

fix test in release mode

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31120 0785d39b-7218-0410-832d-ea1e28bc413d

test has different output in release mode

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31119 0785d39b-7218-0410-832d-ea1e28bc413d

Some compilers apparently want to have a full declaration of ConstraintMatrix
if they see it in a default argument.

git-svn-id: https://svn.dealii.org/trunk@31118 0785d39b-7218-0410-832d-ea1e28bc413d

Qualify strcpy with std::

git-svn-id: https://svn.dealii.org/trunk@31117 0785d39b-7218-0410-832d-ea1e28bc413d

Quick fix

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31116 0785d39b-7218-0410-832d-ea1e28bc413d

Improve exception messages

git-svn-id: https://svn.dealii.org/trunk@31115 0785d39b-7218-0410-832d-ea1e28bc413d

Work around a POSIX violation.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31114 0785d39b-7218-0410-832d-ea1e28bc413d

Remove obsolete file

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31113 0785d39b-7218-0410-832d-ea1e28bc413d

Port new tests

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31112 0785d39b-7218-0410-832d-ea1e28bc413d

Merge trunk into branch_port_the_testsuite

Conflicts:
tests/deal.II/grid_tools_05.output
tests/deal.II/grid_tools_05/cmp/generic

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31111 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix

git-svn-id: https://svn.dealii.org/trunk@31110 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: resolve issue 105

git-svn-id: https://svn.dealii.org/trunk@31109 0785d39b-7218-0410-832d-ea1e28bc413d

Clear buffer at the end of the program.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31108 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Only include libparmetis to the link interface if its likely that it belongs to the metis library..

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31107 0785d39b-7218-0410-832d-ea1e28bc413d

Bugfix: Remove obsolete code

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31106 0785d39b-7218-0410-832d-ea1e28bc413d

Rename a few variables. Initialize vectors with vector sets and communicators, rather than other vectors, to make clear that the vector is not in fact copied, and to make it clearer what index set is being used.

git-svn-id: https://svn.dealii.org/trunk@31105 0785d39b-7218-0410-832d-ea1e28bc413d

Remove file accidentally added.

git-svn-id: https://svn.dealii.org/trunk@31104 0785d39b-7218-0410-832d-ea1e28bc413d

Remove one variable whose value is always equal to another.

git-svn-id: https://svn.dealii.org/trunk@31103 0785d39b-7218-0410-832d-ea1e28bc413d

Remove one variable whose value is always equal to another.

git-svn-id: https://svn.dealii.org/trunk@31102 0785d39b-7218-0410-832d-ea1e28bc413d

fix script

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31101 0785d39b-7218-0410-832d-ea1e28bc413d

Correct output for now higher precision.

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31100 0785d39b-7218-0410-832d-ea1e28bc413d

fix test: release mode does not sort indices for performance reasons

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31099 0785d39b-7218-0410-832d-ea1e28bc413d

change metis test output. probably due to newer metis version

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31098 0785d39b-7218-0410-832d-ea1e28bc413d

fix test

git-svn-id: https://svn.dealii.org/branches/branch_port_the_testsuite@31096 0785d39b-7218-0410-832d-ea1e28bc413d

do a todo - use PetscReal where real_type is needed.

git-svn-id: https://svn.dealii.org/trunk@31095 0785d39b-7218-0410-832d-ea1e28bc413d