]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
8 years agoMerge pull request #2107 from bangerth/fix-changelog
David Wells [Sat, 23 Jan 2016 18:35:48 +0000 (13:35 -0500)]
Merge pull request #2107 from bangerth/fix-changelog

Fix grammar of an entry in the changelog.

8 years agoFix grammar of an entry in the changelog. 2107/head
Wolfgang Bangerth [Sat, 23 Jan 2016 18:30:42 +0000 (12:30 -0600)]
Fix grammar of an entry in the changelog.

8 years agoMerge pull request #2103 from bangerth/further-FEValues-cleanups-36
Wolfgang Bangerth [Sat, 23 Jan 2016 18:10:35 +0000 (12:10 -0600)]
Merge pull request #2103 from bangerth/further-FEValues-cleanups-36

Remove an unused argument of FiniteElementData.

8 years agoRemove an unused argument of FiniteElementData. 2103/head
Wolfgang Bangerth [Sat, 23 Jan 2016 16:43:59 +0000 (10:43 -0600)]
Remove an unused argument of FiniteElementData.

The value of this argument was unused by this class, but several derived
classes passed something down anyway. Fix this by simply removing the argument.

8 years agoRemove a default constructor that likely doesn't do very much good.
Wolfgang Bangerth [Sat, 23 Jan 2016 16:07:21 +0000 (10:07 -0600)]
Remove a default constructor that likely doesn't do very much good.

8 years agoMerge pull request #2102 from tjhei/fix_test
Martin Kronbichler [Sat, 23 Jan 2016 11:32:07 +0000 (12:32 +0100)]
Merge pull request #2102 from tjhei/fix_test

fix test codim_one/error_estimator_02

8 years agofix test codim_one/error_estimator_02 2102/head
Timo Heister [Sat, 23 Jan 2016 10:56:27 +0000 (11:56 +0100)]
fix test codim_one/error_estimator_02

fixes dealii/tests/codim_one/error_estimator_02.cc:75:9: warning: using
integer absolute value function 'abs' when argument is of floating point
type [-Wabsolute-value]
    if (abs(p(1)-1.0)<1e-5)

8 years agoMerge pull request #2097 from davydden/slepc_tests_no_iterations
Wolfgang Bangerth [Sat, 23 Jan 2016 03:07:47 +0000 (21:07 -0600)]
Merge pull request #2097 from davydden/slepc_tests_no_iterations

do not print-out iteration counts for GHEP SLEPc unit tests

8 years agoMerge pull request #2092 from tjhei/kelly_codim_one
Wolfgang Bangerth [Sat, 23 Jan 2016 03:05:46 +0000 (21:05 -0600)]
Merge pull request #2092 from tjhei/kelly_codim_one

Kelly codim one

8 years agodo not print-out iteration counts for GHEP SLEPc unit tests 2097/head
Denis Davydov [Thu, 21 Jan 2016 21:15:48 +0000 (22:15 +0100)]
do not print-out iteration counts for GHEP SLEPc unit tests

8 years agofix multithreading bug in test 2092/head
Timo Heister [Fri, 22 Jan 2016 03:10:02 +0000 (22:10 -0500)]
fix multithreading bug in test

8 years agoadd changelog
Timo Heister [Fri, 22 Jan 2016 03:09:54 +0000 (22:09 -0500)]
add changelog

8 years agofix Neumann part of 1d Kelly estimator
Timo Heister [Fri, 22 Jan 2016 03:01:00 +0000 (22:01 -0500)]
fix Neumann part of 1d Kelly estimator

Neumann conditions were evaluated at the wrong point. Also adjust test
(and print coordinates to prove that it is correct now).

8 years agoMerge pull request #2096 from tjhei/doxygen_remove_duplicate_functs
Wolfgang Bangerth [Thu, 21 Jan 2016 22:58:08 +0000 (16:58 -0600)]
Merge pull request #2096 from tjhei/doxygen_remove_duplicate_functs

doxygen: do not export duplicate functions

8 years agodoxygen: do not export duplicate functions 2096/head
Timo Heister [Thu, 21 Jan 2016 20:47:08 +0000 (15:47 -0500)]
doxygen: do not export duplicate functions

Since we started handing .cc files to doxygen, every explicit template
declaration of a function inside a .cc would generate another line for
that function in the class documentation (not clickable and before the
correct ones). We fix this by hiding undocumented functions. A quick
test shows, that even with this change, undocumented functions inside
classes defined in the .h will still be exported, because things like
@name groups and @ingroup count as "documentation".

8 years agofix 1d Kelly estimator
Timo Heister [Thu, 21 Jan 2016 16:01:19 +0000 (11:01 -0500)]
fix 1d Kelly estimator

8 years agofix test
Timo Heister [Thu, 21 Jan 2016 16:01:10 +0000 (11:01 -0500)]
fix test

8 years agoMerge pull request #2094 from kronbichler/fix_test_runs
Bruno Turcksin [Thu, 21 Jan 2016 11:22:07 +0000 (06:22 -0500)]
Merge pull request #2094 from kronbichler/fix_test_runs

Only run tests if Trilinos is available.

8 years agoOnly run tests if Trilinos is available. 2094/head
Martin Kronbichler [Thu, 21 Jan 2016 07:59:07 +0000 (08:59 +0100)]
Only run tests if Trilinos is available.

8 years agoMerge pull request #2091 from drwells/fix-documentation-verbatim-block
Timo Heister [Wed, 20 Jan 2016 21:45:59 +0000 (16:45 -0500)]
Merge pull request #2091 from drwells/fix-documentation-verbatim-block

Fix documentation verbatim block

8 years agoremove unused code
Timo Heister [Wed, 20 Jan 2016 21:35:40 +0000 (16:35 -0500)]
remove unused code

8 years agofix test formatting
Timo Heister [Wed, 20 Jan 2016 21:28:32 +0000 (16:28 -0500)]
fix test formatting

8 years agorewrite normal vector computation
Timo Heister [Wed, 20 Jan 2016 21:28:24 +0000 (16:28 -0500)]
rewrite normal vector computation

8 years agoImprove formatting in a documentation example. 2091/head
David Wells [Wed, 20 Jan 2016 20:50:58 +0000 (15:50 -0500)]
Improve formatting in a documentation example.

8 years agoPrefer code to verbatim environments.
David Wells [Wed, 20 Jan 2016 20:45:26 +0000 (15:45 -0500)]
Prefer code to verbatim environments.

The pair '@code' and '@endcode' will instruct doxygen to perform syntax
highlighting while the verbatim environment does not.

8 years agoMerge pull request #2090 from drwells/dofhandlertype-doc
Wolfgang Bangerth [Wed, 20 Jan 2016 19:22:42 +0000 (13:22 -0600)]
Merge pull request #2090 from drwells/dofhandlertype-doc

Fix some DoFHandlerType documentation.

8 years agoMerge pull request #2089 from drwells/update-comment-indentation-1
Wolfgang Bangerth [Wed, 20 Jan 2016 19:16:01 +0000 (13:16 -0600)]
Merge pull request #2089 from drwells/update-comment-indentation-1

Update comment indentation 1

8 years agoFix some DoFHandlerType documentation. 2090/head
David Wells [Wed, 20 Jan 2016 18:52:23 +0000 (13:52 -0500)]
Fix some DoFHandlerType documentation.

8 years agoFill in the rest of a missing comment. 2089/head
David Wells [Wed, 20 Jan 2016 19:06:51 +0000 (14:06 -0500)]
Fill in the rest of a missing comment.

8 years agoReindent comments in the documentation: part 2.
David Wells [Wed, 20 Jan 2016 18:50:58 +0000 (13:50 -0500)]
Reindent comments in the documentation: part 2.

Up until 801cfbfc1d deal.II used a style where comments would start at
about the 20th character for visibility. Some comments within the
documentation were not updated at the time.

8 years agoMerge pull request #2087 from kronbichler/master
Martin Kronbichler [Wed, 20 Jan 2016 18:50:52 +0000 (19:50 +0100)]
Merge pull request #2087 from kronbichler/master

Fix compiler warning

8 years agoWIP kelly fix
Timo Heister [Sat, 16 Jan 2016 23:46:28 +0000 (17:46 -0600)]
WIP kelly fix

8 years agoFix compiler warning 2087/head
Martin Kronbichler [Wed, 20 Jan 2016 16:55:19 +0000 (17:55 +0100)]
Fix compiler warning

8 years agoMerge pull request #2086 from tjhei/hyper_shell_followup
Wolfgang Bangerth [Wed, 20 Jan 2016 15:58:05 +0000 (09:58 -0600)]
Merge pull request #2086 from tjhei/hyper_shell_followup

follow-up on hyper_shell documentation fixes

8 years agofollow-up on hyper_shell documentation fixes 2086/head
Timo Heister [Wed, 20 Jan 2016 15:37:03 +0000 (10:37 -0500)]
follow-up on hyper_shell documentation fixes

8 years agoadd failing test
Timo Heister [Wed, 20 Jan 2016 15:24:19 +0000 (10:24 -0500)]
add failing test

8 years agoMerge pull request #2085 from kronbichler/fix_msvc_compilation_02
Timo Heister [Wed, 20 Jan 2016 15:14:25 +0000 (10:14 -0500)]
Merge pull request #2085 from kronbichler/fix_msvc_compilation_02

Second attempt to fix MSVC on aligned vector

8 years agoSecond attempt to fix MSVC on aligned vector 2085/head
Martin Kronbichler [Wed, 20 Jan 2016 15:04:07 +0000 (16:04 +0100)]
Second attempt to fix MSVC on aligned vector

8 years agoMerge pull request #2084 from tjhei/hyper_shell_defaults
Martin Kronbichler [Wed, 20 Jan 2016 14:46:40 +0000 (15:46 +0100)]
Merge pull request #2084 from tjhei/hyper_shell_defaults

default cell numbers for hyper_shell in 3d

8 years agoMerge pull request #2052 from kronbichler/master
Martin Kronbichler [Wed, 20 Jan 2016 14:36:12 +0000 (15:36 +0100)]
Merge pull request #2052 from kronbichler/master

Matrix-free level transfer for geometric multigrid

8 years agoAdd changelog entry 2052/head
Martin Kronbichler [Wed, 20 Jan 2016 14:31:25 +0000 (15:31 +0100)]
Add changelog entry

8 years agodefault cell numbers for hyper_shell in 3d 2084/head
Timo Heister [Wed, 20 Jan 2016 14:32:58 +0000 (09:32 -0500)]
default cell numbers for hyper_shell in 3d

- a default of n_cells=0 will now choose 6 coarse cells in 3d (instead
of throwing an exception)
- improve documentation

8 years agoSmall changes to due comments on code.
Martin Kronbichler [Tue, 19 Jan 2016 21:40:13 +0000 (22:40 +0100)]
Small changes to due comments on code.

8 years agoMake tests a bit faster
Martin Kronbichler [Tue, 19 Jan 2016 20:35:35 +0000 (21:35 +0100)]
Make tests a bit faster

8 years agoUse reproducible random numbers in tests
Martin Kronbichler [Tue, 19 Jan 2016 19:04:30 +0000 (20:04 +0100)]
Use reproducible random numbers in tests

8 years agoUnit tests for matrix-free mg transfer
Martin Kronbichler [Mon, 11 Jan 2016 13:12:18 +0000 (14:12 +0100)]
Unit tests for matrix-free mg transfer

8 years agoFramework tests (complete multigrid solver)
Martin Kronbichler [Mon, 11 Jan 2016 13:12:05 +0000 (14:12 +0100)]
Framework tests (complete multigrid solver)

8 years agoTest safety
Martin Kronbichler [Mon, 11 Jan 2016 13:11:50 +0000 (14:11 +0100)]
Test safety

8 years agoImplement matrix-free multigrid level transfer for FE_Q/FE_DGQ
Martin Kronbichler [Mon, 11 Jan 2016 13:11:26 +0000 (14:11 +0100)]
Implement matrix-free multigrid level transfer for FE_Q/FE_DGQ

8 years agoAdd instantiation
Martin Kronbichler [Mon, 11 Jan 2016 11:42:47 +0000 (12:42 +0100)]
Add instantiation

8 years agoMerge pull request #2083 from tjhei/fix_multigrid_deadlock2
Martin Kronbichler [Tue, 19 Jan 2016 19:05:18 +0000 (20:05 +0100)]
Merge pull request #2083 from tjhei/fix_multigrid_deadlock2

Fix multigrid deadlock part 2

8 years agoMerge pull request #2082 from ESeNonFossiIo/small_error
David Wells [Tue, 19 Jan 2016 18:45:20 +0000 (13:45 -0500)]
Merge pull request #2082 from ESeNonFossiIo/small_error

swap Range Domain in null_operator

8 years agofix marking of MG cells 2083/head
Timo Heister [Tue, 19 Jan 2016 18:00:29 +0000 (13:00 -0500)]
fix marking of MG cells

8 years agofix warning
Timo Heister [Tue, 19 Jan 2016 18:00:08 +0000 (13:00 -0500)]
fix warning

8 years agoswap 2082/head
ESeNonFossiIo [Tue, 19 Jan 2016 16:01:11 +0000 (17:01 +0100)]
swap

8 years agoMerge pull request #2080 from kronbichler/fix_msvc_compilation
Wolfgang Bangerth [Tue, 19 Jan 2016 13:44:35 +0000 (07:44 -0600)]
Merge pull request #2080 from kronbichler/fix_msvc_compilation

Fix compilation with MSVC

8 years agoFix compilation with MSVC 2080/head
Martin Kronbichler [Tue, 19 Jan 2016 13:31:07 +0000 (14:31 +0100)]
Fix compilation with MSVC

8 years agoMerge pull request #2079 from tjhei/mg_par_deadlock
Martin Kronbichler [Tue, 19 Jan 2016 10:53:27 +0000 (11:53 +0100)]
Merge pull request #2079 from tjhei/mg_par_deadlock

Parallel Multigrid deadlock

8 years agosetup missing parallel level neighbors 2079/head
Timo Heister [Tue, 19 Jan 2016 03:27:23 +0000 (22:27 -0500)]
setup missing parallel level neighbors

Level ghosts were not set up if neighbor is finer and we have no cells
on that finest level. This causes a situation where
Triangulation::level_ghost_owners is not symmetric causing a deadlock
(and maybe also wrong information down the line). This causes a few test
output changes...

8 years agoadd comments and checks
Timo Heister [Tue, 19 Jan 2016 03:14:25 +0000 (22:14 -0500)]
add comments and checks

8 years agoadd failing test
Timo Heister [Tue, 19 Jan 2016 03:13:40 +0000 (22:13 -0500)]
add failing test

8 years agoMerge pull request #2078 from drwells/improve-line-continuations
David Wells [Tue, 19 Jan 2016 02:45:32 +0000 (21:45 -0500)]
Merge pull request #2078 from drwells/improve-line-continuations

Improve line continuations

8 years agoRemove some unneeded virtual functions. 2078/head
David Wells [Mon, 18 Jan 2016 20:46:24 +0000 (15:46 -0500)]
Remove some unneeded virtual functions.

These functions immediately call the base class versions of themselves
so there is no need for them to be reimplemented.

8 years agoImprove ParameterHandler continuation handling.
David Wells [Tue, 19 Jan 2016 02:10:39 +0000 (21:10 -0500)]
Improve ParameterHandler continuation handling.

This commit builds on 23f306dfc5. ParameterHandler now correctly handles
continuation lines in both versions of the read_input function, while before it
only handled continuation lines in one version (the file name as a string
version) before.

Closes #333.

8 years agoPrefer 'std::getline' to just 'getline'.
David Wells [Mon, 18 Jan 2016 22:23:32 +0000 (17:23 -0500)]
Prefer 'std::getline' to just 'getline'.

8 years agoRename 'lineno' to 'current_line_n'.
David Wells [Mon, 18 Jan 2016 14:58:14 +0000 (09:58 -0500)]
Rename 'lineno' to 'current_line_n'.

This matches the convention used elsewhere in the library. In addition,
make it consistently an unsigned int.

8 years agoImprove some ParameterHandler code samples.
David Wells [Mon, 18 Jan 2016 20:43:23 +0000 (15:43 -0500)]
Improve some ParameterHandler code samples.

The code samples are now formatted in the same way as the rest of the
library. Additionally, I fixed a memory leak in one example and got rid
of 'void main' in another.

8 years agoSwitch from the old comment format to the new one.
David Wells [Mon, 18 Jan 2016 14:09:21 +0000 (09:09 -0500)]
Switch from the old comment format to the new one.

Up until 801cfbfc1d deal.II used a style where comments would start at
about the 20th character for visibility. Some comments within the
documentation were not updated at the time.

8 years agoSimplify the forward declarations.
David Wells [Mon, 18 Jan 2016 14:03:07 +0000 (09:03 -0500)]
Simplify the forward declarations.

ParameterHandler does not need a forward declaration because none of the
Pattern classes use it.

8 years agoMerge pull request #2077 from kronbichler/fix_matrixfree_uninit_variable
Wolfgang Bangerth [Mon, 18 Jan 2016 13:05:05 +0000 (07:05 -0600)]
Merge pull request #2077 from kronbichler/fix_matrixfree_uninit_variable

Do not run into an unused block of code

8 years agoMerge pull request #2076 from angelrca/FECollection_new_constructors_docchanges
Martin Kronbichler [Mon, 18 Jan 2016 12:53:31 +0000 (13:53 +0100)]
Merge pull request #2076 from angelrca/FECollection_new_constructors_docchanges

FECollection new constructors changes.h

8 years agoDo not run into an unused block of code 2077/head
Martin Kronbichler [Mon, 18 Jan 2016 12:48:46 +0000 (13:48 +0100)]
Do not run into an unused block of code

8 years agoFECollection new constructors changes.h 2076/head
angelrca [Mon, 18 Jan 2016 08:43:06 +0000 (09:43 +0100)]
FECollection new constructors changes.h

8 years agoMerge pull request #2074 from drwells/update-changes.h-for-write_msh-fix
Wolfgang Bangerth [Mon, 18 Jan 2016 01:25:02 +0000 (19:25 -0600)]
Merge pull request #2074 from drwells/update-changes.h-for-write_msh-fix

Added a changelog entry for the GridOut fixes.

8 years agoAdded a changelog entry for the GridOut fixes. 2074/head
David Wells [Mon, 18 Jan 2016 01:03:27 +0000 (20:03 -0500)]
Added a changelog entry for the GridOut fixes.

8 years agoMerge pull request #2068 from drwells/gridout-write_msh-fixes
Wolfgang Bangerth [Mon, 18 Jan 2016 00:38:58 +0000 (18:38 -0600)]
Merge pull request #2068 from drwells/gridout-write_msh-fixes

GridOut fixes

8 years agoAlso assign unique numbers to UCD elements. 2068/head
David Wells [Sun, 17 Jan 2016 23:56:17 +0000 (18:56 -0500)]
Also assign unique numbers to UCD elements.

Same as the previous commit.

Closes #814.

8 years agoAssign unique numbers to GMSH elements.
David Wells [Sat, 16 Jan 2016 18:00:50 +0000 (13:00 -0500)]
Assign unique numbers to GMSH elements.

GMSH will not properly load information from a .msh file if some
element (geometry element, as in line, face, quadrilateral, hexahedron)
indices are repeated.

Partially addresses issue #814.

8 years agoMerge pull request #2065 from angelrca/FECollection_new_constructors
Wolfgang Bangerth [Sun, 17 Jan 2016 21:15:34 +0000 (15:15 -0600)]
Merge pull request #2065 from angelrca/FECollection_new_constructors

hp::FECollection new constructors added

8 years agoMerge pull request #2073 from tjhei/doc_fixes
Wolfgang Bangerth [Sun, 17 Jan 2016 21:14:53 +0000 (15:14 -0600)]
Merge pull request #2073 from tjhei/doc_fixes

Doxygen fixes

8 years agofix broken tutorial image links 2073/head
Timo Heister [Sun, 17 Jan 2016 20:28:41 +0000 (14:28 -0600)]
fix broken tutorial image links

do not replace ...step-xy inside <img links

8 years agodoxygen fixes
Timo Heister [Sun, 17 Jan 2016 19:47:04 +0000 (13:47 -0600)]
doxygen fixes

8 years agotable layout and image fixes
Timo Heister [Sun, 17 Jan 2016 19:46:27 +0000 (13:46 -0600)]
table layout and image fixes

- fix weird case where doxygen shifts the last cell in a table downward
causing them to be not correctly aligned
- cleanup some image layout
- do not break image tags (this will break various scripts)

8 years agoMerge pull request #2072 from bangerth/fix-typo
Martin Kronbichler [Sun, 17 Jan 2016 19:47:39 +0000 (20:47 +0100)]
Merge pull request #2072 from bangerth/fix-typo

Fix typo.

8 years agoFix typo. 2072/head
Wolfgang Bangerth [Sun, 17 Jan 2016 19:46:47 +0000 (13:46 -0600)]
Fix typo.

8 years agoMerge pull request #2071 from davydden/mpiexec
Matthias Maier [Sun, 17 Jan 2016 19:04:30 +0000 (13:04 -0600)]
Merge pull request #2071 from davydden/mpiexec

allow oevrriding MPIEXEC from an environment varible

8 years agoallow oevrriding MPIEXEC from an environment varible 2071/head
Denis Davydov [Sun, 17 Jan 2016 09:51:21 +0000 (10:51 +0100)]
allow oevrriding MPIEXEC from an environment varible

8 years agoFix two documentation links.
David Wells [Sat, 16 Jan 2016 17:48:42 +0000 (12:48 -0500)]
Fix two documentation links.

8 years agoPrefer '\n' to std::endl.
David Wells [Sat, 16 Jan 2016 17:35:33 +0000 (12:35 -0500)]
Prefer '\n' to std::endl.

std::endl flushes the buffer and '\n' is converted internally to the
correct line ending.

8 years agoFix some typos in grid_out.h.
David Wells [Sat, 16 Jan 2016 17:34:27 +0000 (12:34 -0500)]
Fix some typos in grid_out.h.

8 years agoMerge pull request #2067 from bangerth/update-test-output
Denis Davydov [Fri, 15 Jan 2016 19:55:11 +0000 (20:55 +0100)]
Merge pull request #2067 from bangerth/update-test-output

Update test output.

8 years agohp::FECollection new constructors added 2065/head
angelrca [Fri, 15 Jan 2016 09:04:32 +0000 (10:04 +0100)]
hp::FECollection new constructors added

8 years agoUpdate test output files. 2067/head
Wolfgang Bangerth [Fri, 15 Jan 2016 18:37:32 +0000 (12:37 -0600)]
Update test output files.

8 years agoMerge pull request #2064 from davydden/slepc_tests_fix
Wolfgang Bangerth [Fri, 15 Jan 2016 17:29:47 +0000 (11:29 -0600)]
Merge pull request #2064 from davydden/slepc_tests_fix

Slepc tests fix

8 years agoMerge pull request #2066 from drwells/linear-operator-typo
Denis Davydov [Fri, 15 Jan 2016 14:39:52 +0000 (15:39 +0100)]
Merge pull request #2066 from drwells/linear-operator-typo

Fix a typo in LinearOperator's description.

8 years agoFix a typo in LinearOperator's description. 2066/head
David Wells [Fri, 15 Jan 2016 14:29:23 +0000 (09:29 -0500)]
Fix a typo in LinearOperator's description.

8 years agomake sure vectors passed to EPSSetInitialSpace() are nonzero 2064/head
Denis Davydov [Fri, 15 Jan 2016 08:23:34 +0000 (09:23 +0100)]
make sure vectors passed to EPSSetInitialSpace() are nonzero

8 years agovarious fixes and improvements to SLEPc unit tests
Denis Davydov [Thu, 14 Jan 2016 19:18:59 +0000 (20:18 +0100)]
various fixes and improvements to SLEPc unit tests

some fiddling with solver settings (preconditioner, tolerance, etc) to
produce the same output on OS-X and Linux.
/slepc/step-36_parallel still needs two different outputs, though.

fixed an uninitialised initial vector bug in slepc/step-36 unit test

8 years agoadd a note to set_initial_space()
Denis Davydov [Thu, 14 Jan 2016 19:17:46 +0000 (20:17 +0100)]
add a note to set_initial_space()

8 years agoMerge pull request #2062 from asartori86/inst_extract_dofs
Luca Heltai [Wed, 13 Jan 2016 14:37:19 +0000 (15:37 +0100)]
Merge pull request #2062 from asartori86/inst_extract_dofs

instantiate extract_dofs for codim !=0


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