]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
5 years agoMerge pull request #8148 from drwells/disable-fp-exceptions-hdf5
Matthias Maier [Tue, 14 May 2019 04:18:55 +0000 (23:18 -0500)]
Merge pull request #8148 from drwells/disable-fp-exceptions-hdf5

Disable floating point exceptions in two HDF5 tests.

5 years agoMerge pull request #8150 from masterleinad/missing_header_symengine
David Wells [Tue, 14 May 2019 03:21:44 +0000 (23:21 -0400)]
Merge pull request #8150 from masterleinad/missing_header_symengine

Add missing header in symengine_tensor_operations.h

5 years agoAdd missing header in symengine_tensor_operations.h 8150/head
Daniel Arndt [Tue, 14 May 2019 03:02:38 +0000 (05:02 +0200)]
Add missing header in symengine_tensor_operations.h

5 years agoMerge pull request #8147 from kronbichler/fix_two_tests
Daniel Arndt [Tue, 14 May 2019 02:16:43 +0000 (22:16 -0400)]
Merge pull request #8147 from kronbichler/fix_two_tests

Make two tests more stable

5 years agoMerge pull request #8142 from drwells/cppcheck-9.1
Daniel Arndt [Tue, 14 May 2019 01:16:36 +0000 (21:16 -0400)]
Merge pull request #8142 from drwells/cppcheck-9.1

Cppcheck 9.1

5 years agoMerge pull request #8149 from drwells/add-6774-changelog
Timo Heister [Mon, 13 May 2019 22:44:16 +0000 (16:44 -0600)]
Merge pull request #8149 from drwells/add-6774-changelog

Add a changelog entry for 6774.

5 years agoMerge pull request #8139 from tamiko/disable-gcc-9-warning
Matthias Maier [Mon, 13 May 2019 22:41:12 +0000 (17:41 -0500)]
Merge pull request #8139 from tamiko/disable-gcc-9-warning

Ignore -Wdeprecated-copy in external headers

5 years agofix changelog entry format 8149/head
Matthias Maier [Mon, 13 May 2019 22:34:56 +0000 (17:34 -0500)]
fix changelog entry format

5 years agoAdd a changelog entry for 6774.
David Wells [Mon, 13 May 2019 21:24:21 +0000 (17:24 -0400)]
Add a changelog entry for 6774.

5 years agoDisable floating point exceptions in two HDF5 tests. 8148/head
David Wells [Mon, 13 May 2019 21:03:37 +0000 (17:03 -0400)]
Disable floating point exceptions in two HDF5 tests.

5 years agoMerge pull request #8145 from masterleinad/warn_cuda_threads_native
Martin Kronbichler [Mon, 13 May 2019 19:56:43 +0000 (21:56 +0200)]
Merge pull request #8145 from masterleinad/warn_cuda_threads_native

Warn about using CUDA+Threads+march=native

5 years agocppcheck: initialize a member in the init list. 8142/head
David Wells [Mon, 13 May 2019 17:27:17 +0000 (13:27 -0400)]
cppcheck: initialize a member in the init list.

5 years agocppcheck: Pass a vector by reference.
David Wells [Mon, 13 May 2019 17:27:04 +0000 (13:27 -0400)]
cppcheck: Pass a vector by reference.

5 years agocppcheck: Match variable names in the header and source.
David Wells [Mon, 13 May 2019 17:25:14 +0000 (13:25 -0400)]
cppcheck: Match variable names in the header and source.

5 years agocppcheck: explicitly call a virtual function in a ctor.
David Wells [Mon, 13 May 2019 17:24:58 +0000 (13:24 -0400)]
cppcheck: explicitly call a virtual function in a ctor.

5 years agocppcheck: remove a duplicate static constant.
David Wells [Mon, 13 May 2019 14:58:24 +0000 (10:58 -0400)]
cppcheck: remove a duplicate static constant.

This is the same as the one in the base class.

5 years agoMake point comparison more stable in case of roundoff 8147/head
Martin Kronbichler [Mon, 13 May 2019 19:42:47 +0000 (21:42 +0200)]
Make point comparison more stable in case of roundoff

5 years agoAllow test with 48 iterations
Martin Kronbichler [Mon, 13 May 2019 19:42:25 +0000 (21:42 +0200)]
Allow test with 48 iterations

5 years agoAdd recommendation 8145/head
Daniel Arndt [Mon, 13 May 2019 19:31:15 +0000 (15:31 -0400)]
Add recommendation

5 years agoMerge pull request #8146 from tjhei/doxygen_style_tables
Martin Kronbichler [Mon, 13 May 2019 19:21:41 +0000 (21:21 +0200)]
Merge pull request #8146 from tjhei/doxygen_style_tables

doxygen style tables

5 years agoMerge pull request #8143 from tjhei/table_empty_lines
Martin Kronbichler [Mon, 13 May 2019 19:15:55 +0000 (21:15 +0200)]
Merge pull request #8143 from tjhei/table_empty_lines

remove empty lines in html tables

5 years agoMerge pull request #8141 from tamiko/cppcheck-2
Martin Kronbichler [Mon, 13 May 2019 18:58:16 +0000 (20:58 +0200)]
Merge pull request #8141 from tamiko/cppcheck-2

cppcheck: avoid an unused variable

5 years agouse doxygen style for html tables with border 8146/head
Timo Heister [Mon, 13 May 2019 18:08:00 +0000 (12:08 -0600)]
use doxygen style for html tables with border

5 years agoWarn about using CUDA+Threads+march=native
Daniel Arndt [Mon, 13 May 2019 17:53:23 +0000 (19:53 +0200)]
Warn about using CUDA+Threads+march=native

5 years agoremove newlines in tables 8143/head
Timo Heister [Mon, 13 May 2019 17:58:50 +0000 (11:58 -0600)]
remove newlines in tables

5 years agolower case html tables
Timo Heister [Mon, 13 May 2019 17:51:40 +0000 (11:51 -0600)]
lower case html tables

5 years agocppcheck: add an assertion.
David Wells [Mon, 13 May 2019 14:58:16 +0000 (10:58 -0400)]
cppcheck: add an assertion.

5 years agocppcheck: prefer ++i to i++
David Wells [Mon, 13 May 2019 14:58:02 +0000 (10:58 -0400)]
cppcheck: prefer ++i to i++

5 years agoMerge pull request #8128 from kronbichler/disable_simd_includes
Martin Kronbichler [Mon, 13 May 2019 16:37:04 +0000 (18:37 +0200)]
Merge pull request #8128 from kronbichler/disable_simd_includes

Disable intrinsics includes if DEAL_II_VECTORIZATION_LEVEL=0

5 years agoMerge pull request #8137 from tamiko/update-copyright
Martin Kronbichler [Mon, 13 May 2019 16:30:36 +0000 (18:30 +0200)]
Merge pull request #8137 from tamiko/update-copyright

Update copyright years.

5 years agoMerge pull request #8138 from tamiko/update_trilinos_version
David Wells [Mon, 13 May 2019 16:00:30 +0000 (12:00 -0400)]
Merge pull request #8138 from tamiko/update_trilinos_version

Update Trilinos version.

5 years agoDisable diagnostics pragma in a few boost and tbb headers 8139/head
Martin Kronbichler [Mon, 13 May 2019 15:54:10 +0000 (17:54 +0200)]
Disable diagnostics pragma in a few boost and tbb headers

5 years agocppcheck: avoid an unused variable 8141/head
Matthias Maier [Mon, 13 May 2019 15:45:33 +0000 (10:45 -0500)]
cppcheck: avoid an unused variable

5 years agoignore -Wdeprecated-copy in external headers
Matthias Maier [Mon, 13 May 2019 15:06:21 +0000 (10:06 -0500)]
ignore -Wdeprecated-copy in external headers

5 years agoUpdate Trilinos version. 8138/head
Matthias Maier [Mon, 13 May 2019 14:53:35 +0000 (09:53 -0500)]
Update Trilinos version.

5 years agoUpdate copyright years. 8137/head
Matthias Maier [Mon, 13 May 2019 14:49:18 +0000 (09:49 -0500)]
Update copyright years.

5 years agoDisable vectorization with CUDA 8128/head
Martin Kronbichler [Mon, 13 May 2019 13:21:55 +0000 (15:21 +0200)]
Disable vectorization with CUDA

5 years agoDisable vectorization if DEAL_II_VECTORIZATION_LEVEL=0
Martin Kronbichler [Mon, 13 May 2019 08:21:35 +0000 (10:21 +0200)]
Disable vectorization if DEAL_II_VECTORIZATION_LEVEL=0

5 years agoMerge pull request #8133 from bangerth/fix
Martin Kronbichler [Mon, 13 May 2019 09:26:37 +0000 (11:26 +0200)]
Merge pull request #8133 from bangerth/fix

Fix a couple of comments.

5 years agoFix a couple of comments. 8133/head
Wolfgang Bangerth [Mon, 13 May 2019 09:18:37 +0000 (03:18 -0600)]
Fix a couple of comments.

5 years agoMerge pull request #8130 from bangerth/fixup
Martin Kronbichler [Mon, 13 May 2019 09:00:38 +0000 (11:00 +0200)]
Merge pull request #8130 from bangerth/fixup

Fix the two comments from #8127.

5 years agoMerge pull request #8129 from bangerth/table
Martin Kronbichler [Mon, 13 May 2019 08:59:51 +0000 (10:59 +0200)]
Merge pull request #8129 from bangerth/table

Provide a much nicer way to format a table in step-56.

5 years agoFix the two comments from #8127. 8130/head
Wolfgang Bangerth [Mon, 13 May 2019 08:54:34 +0000 (02:54 -0600)]
Fix the two comments from #8127.

5 years agoProvide a much nicer way to format a table in step-56. 8129/head
Wolfgang Bangerth [Mon, 13 May 2019 08:50:57 +0000 (02:50 -0600)]
Provide a much nicer way to format a table in step-56.

5 years agoMerge pull request #8127 from tjhei/wrap_comment_warnings
Wolfgang Bangerth [Mon, 13 May 2019 08:47:07 +0000 (02:47 -0600)]
Merge pull request #8127 from tjhei/wrap_comment_warnings

release: wrap_comment warnings

5 years agoMerge pull request #8123 from drwells/improve-plural
Wolfgang Bangerth [Mon, 13 May 2019 08:43:47 +0000 (02:43 -0600)]
Merge pull request #8123 from drwells/improve-plural

Use 'Tensor objects' instead of 'Tensors'.

5 years agoMerge branch 'master' into wrap_comment_warnings 8127/head
Wolfgang Bangerth [Mon, 13 May 2019 08:41:54 +0000 (02:41 -0600)]
Merge branch 'master' into wrap_comment_warnings

5 years agoMerge pull request #8012 from Rombur/cuda_tutorial
Martin Kronbichler [Mon, 13 May 2019 08:26:10 +0000 (10:26 +0200)]
Merge pull request #8012 from Rombur/cuda_tutorial

Step-64 : matrix-free CUDA

5 years agoMerge pull request #8124 from masterleinad/fix_codespell_findings
Martin Kronbichler [Mon, 13 May 2019 05:48:18 +0000 (07:48 +0200)]
Merge pull request #8124 from masterleinad/fix_codespell_findings

Fix codespell findings

5 years agoa few more
Timo Heister [Mon, 13 May 2019 04:41:35 +0000 (22:41 -0600)]
a few more

5 years agorelease: wrap_comment warnings
Timo Heister [Mon, 13 May 2019 04:17:50 +0000 (22:17 -0600)]
release: wrap_comment warnings

Not all of them here might be crictical, but some are clearly bugs
(@name). In general, if @ref is not in a single line, doxygen sometimes
(not always) fails to create the correct link.
The line breaks in differentation/ are likely going to fix some of the
doxygen complaints about missing links.

5 years agoMerge pull request #8033 from jppelteret/sd-scalar_tensor_operations_01
Daniel Arndt [Mon, 13 May 2019 02:56:09 +0000 (22:56 -0400)]
Merge pull request #8033 from jppelteret/sd-scalar_tensor_operations_01

SD scalar and tensor operations: Substitution and evaluation

5 years agoFix codespell findings 8124/head
Daniel Arndt [Mon, 13 May 2019 01:50:27 +0000 (21:50 -0400)]
Fix codespell findings

5 years agoUse 'Tensor objects' instead of 'Tensors'. 8123/head
David Wells [Mon, 13 May 2019 00:55:18 +0000 (20:55 -0400)]
Use 'Tensor objects' instead of 'Tensors'.

This fixes doxygen links

5 years agoImprove documentation of SD tensor operations 8033/head
Jean-Paul Pelteret [Sun, 12 May 2019 23:51:09 +0000 (01:51 +0200)]
Improve documentation of SD tensor operations

Co-Authored-By: Daniel Arndt <arndtd@ornl.gov>
5 years agoImprove documentation of SD scalar operations
Jean-Paul Pelteret [Sun, 12 May 2019 23:44:18 +0000 (01:44 +0200)]
Improve documentation of SD scalar operations

Co-Authored-By: Daniel Arndt <arndtd@ornl.gov>
5 years agoMerge pull request #8121 from jppelteret/sd-doc_02
David Wells [Sun, 12 May 2019 23:37:51 +0000 (19:37 -0400)]
Merge pull request #8121 from jppelteret/sd-doc_02

Super small doc fixes for SD math functions

5 years agoTidy up some grammar used to describe SD math functions 8121/head
Jean-Paul Pelteret [Sun, 12 May 2019 23:28:22 +0000 (01:28 +0200)]
Tidy up some grammar used to describe SD math functions

5 years agoCorrect an incomplete latex command in math mode
Jean-Paul Pelteret [Sun, 12 May 2019 23:28:06 +0000 (01:28 +0200)]
Correct an incomplete latex command in math mode

5 years agoMerge pull request #8120 from jppelteret/sd-doc_01
Jean-Paul Pelteret [Sun, 12 May 2019 23:18:43 +0000 (01:18 +0200)]
Merge pull request #8120 from jppelteret/sd-doc_01

Add documentation module for symbolic differentiation

5 years agoFix some spelling errors in documentation of AD module 8120/head
Jean-Paul Pelteret [Sun, 12 May 2019 22:22:26 +0000 (00:22 +0200)]
Fix some spelling errors in documentation of AD module

5 years agoAdd documentation module for symbolic differentiation
Jean-Paul Pelteret [Fri, 10 May 2019 17:58:20 +0000 (19:58 +0200)]
Add documentation module for symbolic differentiation

5 years agoMerge pull request #8117 from drwells/fix-uninitialized-warning
David Wells [Sun, 12 May 2019 22:11:12 +0000 (18:11 -0400)]
Merge pull request #8117 from drwells/fix-uninitialized-warning

Fix a clang warning about an uninitialized read.

5 years agoMerge pull request #8115 from tjhei/doxygen_fixes3
Matthias Maier [Sun, 12 May 2019 21:49:36 +0000 (16:49 -0500)]
Merge pull request #8115 from tjhei/doxygen_fixes3

doxygen fixes

5 years agoMerge pull request #8116 from tjhei/doxygen_fixes4
Matthias Maier [Sun, 12 May 2019 21:46:20 +0000 (16:46 -0500)]
Merge pull request #8116 from tjhei/doxygen_fixes4

fix tables in tutorials

5 years agoMerge pull request #8119 from drwells/double-word-typos
Jean-Paul Pelteret [Sun, 12 May 2019 20:40:55 +0000 (22:40 +0200)]
Merge pull request #8119 from drwells/double-word-typos

Fix some double-word typos.

5 years agoFix some double-word typos. 8119/head
David Wells [Sun, 12 May 2019 19:53:16 +0000 (15:53 -0400)]
Fix some double-word typos.

e.g., "the the".

5 years agoRename some internal functions
Jean-Paul Pelteret [Sat, 11 May 2019 18:04:52 +0000 (20:04 +0200)]
Rename some internal functions

5 years agoAdd further documentation on template parameters
Jean-Paul Pelteret [Sat, 11 May 2019 17:59:28 +0000 (19:59 +0200)]
Add further documentation on template parameters

5 years agoAdd a changelog entry
Jean-Paul Pelteret [Tue, 7 May 2019 20:03:36 +0000 (22:03 +0200)]
Add a changelog entry

5 years agoAdd test for SD tensor substitution and evaluation
Jean-Paul Pelteret [Tue, 7 May 2019 20:01:02 +0000 (22:01 +0200)]
Add test for SD tensor substitution and evaluation

5 years agoAdd test for SD scalar substitution and evaluation
Jean-Paul Pelteret [Tue, 7 May 2019 20:00:42 +0000 (22:00 +0200)]
Add test for SD scalar substitution and evaluation

5 years agoAdd specialisation for rank-0 Tensor functions
Jean-Paul Pelteret [Tue, 7 May 2019 19:47:01 +0000 (21:47 +0200)]
Add specialisation for rank-0 Tensor functions

- Differentiation::SD::tensor_substitution_map()
- Differentiation::SD::tensor_substitute()
- Differentiation::SD::tensor_substitute_evaluate()

5 years agoMove definition of a template function to the header file
Jean-Paul Pelteret [Tue, 7 May 2019 19:45:51 +0000 (21:45 +0200)]
Move definition of a template function to the header file

5 years agoImplement substitution and evaluation for SD tensors
Jean-Paul Pelteret [Tue, 7 May 2019 16:34:19 +0000 (18:34 +0200)]
Implement substitution and evaluation for SD tensors

5 years agoImplement substitution and evaluation for SD scalar types
Jean-Paul Pelteret [Tue, 7 May 2019 16:34:01 +0000 (18:34 +0200)]
Implement substitution and evaluation for SD scalar types

5 years agoMerge pull request #8118 from drwells/add-newline
Jean-Paul Pelteret [Sun, 12 May 2019 19:18:51 +0000 (21:18 +0200)]
Merge pull request #8118 from drwells/add-newline

Add a missing newline.

5 years agoFix use of class name FEFaceFvalues in ScratchData documentation 8115/head
Jean-Paul Pelteret [Sun, 12 May 2019 19:05:12 +0000 (21:05 +0200)]
Fix use of class name FEFaceFvalues in ScratchData documentation

5 years agoFix some doxygen parameters
Jean-Paul Pelteret [Sun, 12 May 2019 19:04:24 +0000 (21:04 +0200)]
Fix some doxygen parameters

5 years agoMerge pull request #8107 from tamiko/for_auto_cell
Matthias Maier [Sun, 12 May 2019 18:56:18 +0000 (13:56 -0500)]
Merge pull request #8107 from tamiko/for_auto_cell

use auto & cell instead of auto cell

5 years agoAdd a missing newline. 8118/head
David Wells [Sun, 12 May 2019 18:55:43 +0000 (14:55 -0400)]
Add a missing newline.

5 years agoMerge pull request #8085 from bangerth/can
Matthias Maier [Sun, 12 May 2019 18:37:35 +0000 (13:37 -0500)]
Merge pull request #8085 from bangerth/can

Run setting canonical pages as part of the doxygen generation process.

5 years agoFix a clang warning about an uninitialized read. 8117/head
David Wells [Sun, 12 May 2019 18:33:30 +0000 (14:33 -0400)]
Fix a clang warning about an uninitialized read.

5 years agoteach clang format not to break section in tutorials
Timo Heister [Sun, 12 May 2019 18:10:45 +0000 (12:10 -0600)]
teach clang format not to break section in tutorials

5 years agofix indentation
Timo Heister [Sun, 12 May 2019 18:07:12 +0000 (12:07 -0600)]
fix indentation

5 years agofix tables in tutorials 8116/head
Timo Heister [Sun, 12 May 2019 18:04:17 +0000 (12:04 -0600)]
fix tables in tutorials

it turns out doxygen breaks the formatting if you have empty lines
within a table (check
https://www.dealii.org/developer/doxygen/deal.II/step_56.html#TimingResults
for an example)

5 years agomore fixes
Timo Heister [Sun, 12 May 2019 17:44:50 +0000 (11:44 -0600)]
more fixes

5 years agofix doxygen problems
Timo Heister [Sun, 12 May 2019 17:37:47 +0000 (11:37 -0600)]
fix doxygen problems

5 years agoMerge pull request #8072 from marcfehling/future-fe
Martin Kronbichler [Sun, 12 May 2019 17:21:14 +0000 (19:21 +0200)]
Merge pull request #8072 from marcfehling/future-fe

 Introduced future finite element indices.

5 years agoMerge pull request #8112 from masterleinad/revert_pr_8111
Martin Kronbichler [Sun, 12 May 2019 17:20:49 +0000 (19:20 +0200)]
Merge pull request #8112 from masterleinad/revert_pr_8111

Revert #8082

5 years agoRevert #8082 8112/head
Daniel Arndt [Sun, 12 May 2019 16:17:28 +0000 (18:17 +0200)]
Revert #8082

This reverts commit f6c96c520478d963cd9ebb6f4877d59e3ddb8b01.

5 years agoMerge pull request #8101 from kronbichler/modernize-step-17
Matthias Maier [Sun, 12 May 2019 15:46:31 +0000 (10:46 -0500)]
Merge pull request #8101 from kronbichler/modernize-step-17

Modernize step-17

5 years agoMerge pull request #8102 from tamiko/modernize_step_6
Matthias Maier [Sun, 12 May 2019 15:43:55 +0000 (10:43 -0500)]
Merge pull request #8102 from tamiko/modernize_step_6

modernize step 6

5 years agofix up dox files 8107/head
Matthias Maier [Sun, 12 May 2019 15:36:13 +0000 (10:36 -0500)]
fix up dox files

5 years agocontrib: favor auto & cell
Matthias Maier [Sun, 12 May 2019 04:19:24 +0000 (23:19 -0500)]
contrib: favor auto & cell

5 years agotests: favor auto & cell
Matthias Maier [Sun, 12 May 2019 04:18:48 +0000 (23:18 -0500)]
tests: favor auto & cell

5 years agoexamples: favor auto & cell
Matthias Maier [Sun, 12 May 2019 04:18:32 +0000 (23:18 -0500)]
examples: favor auto & cell

5 years agosource: favor auto & cell
Matthias Maier [Sun, 12 May 2019 04:18:13 +0000 (23:18 -0500)]
source: favor auto & cell

5 years agoinclude: favor auto & cell
Matthias Maier [Sun, 12 May 2019 04:17:55 +0000 (23:17 -0500)]
include: favor auto & cell

5 years agofix typos 8102/head
Matthias Maier [Sun, 12 May 2019 15:27:15 +0000 (10:27 -0500)]
fix typos


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