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https://gitweb.dealii.org/ - dealii-svn.git/log
turcksin [Thu, 9 May 2013 19:11:46 +0000 (19:11 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29488
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kronbichler [Thu, 9 May 2013 13:13:18 +0000 (13:13 +0000)]
Simplify TrilinosWrappers::SparseMatrix::vmult a bit more by using the same code for all different vector types.
git-svn-id: https://svn.dealii.org/trunk@29487
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kronbichler [Thu, 9 May 2013 12:55:58 +0000 (12:55 +0000)]
Extend MatrixTools::create_mass_matrix and MatrixTools::create_laplace_matrix.
git-svn-id: https://svn.dealii.org/trunk@29486
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kronbichler [Thu, 9 May 2013 06:58:30 +0000 (06:58 +0000)]
Adjust test output: Trilinos has apparently a call to rand() somewhere which affects the random elements we put into the matrix (now there is one initialization less in the Trilinos matrix).
git-svn-id: https://svn.dealii.org/trunk@29485
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bangerth [Thu, 9 May 2013 00:01:22 +0000 (00:01 +0000)]
Remove all uses of a removed variable.
git-svn-id: https://svn.dealii.org/trunk@29484
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kronbichler [Wed, 8 May 2013 20:11:04 +0000 (20:11 +0000)]
Implement a few more matrix-vector products with Trilinos matrices and deal.II vectors. Avoid usage of temporary arrays in Trilinos sparse matrix add/set functoin to make it really thread safe.
git-svn-id: https://svn.dealii.org/trunk@29483
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kronbichler [Wed, 8 May 2013 10:52:17 +0000 (10:52 +0000)]
Fix change description
git-svn-id: https://svn.dealii.org/trunk@29482
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bangerth [Wed, 8 May 2013 08:48:49 +0000 (08:48 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@29481
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kronbichler [Wed, 8 May 2013 08:03:31 +0000 (08:03 +0000)]
Improve advance() operation and comparison operation a bit.
git-svn-id: https://svn.dealii.org/trunk@29480
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kronbichler [Wed, 8 May 2013 05:33:41 +0000 (05:33 +0000)]
Adjust output (row length in ChunkSparsityPattern is now exact also when n_rows()/chunk_size is nonzero.
git-svn-id: https://svn.dealii.org/trunk@29479
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kronbichler [Tue, 7 May 2013 19:34:21 +0000 (19:34 +0000)]
Different BLAS versions apparently produce different stopping residuals with Bicgstab. Use tighter tolerance.
git-svn-id: https://svn.dealii.org/trunk@29478
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kronbichler [Tue, 7 May 2013 17:14:50 +0000 (17:14 +0000)]
Mention change
git-svn-id: https://svn.dealii.org/trunk@29477
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kronbichler [Tue, 7 May 2013 17:14:12 +0000 (17:14 +0000)]
Implement iterator for ChunkSparseMatrix. Parallelize matrix-vector product for ChunkSparseMatrix.
git-svn-id: https://svn.dealii.org/trunk@29476
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kainan.wang [Tue, 7 May 2013 16:58:38 +0000 (16:58 +0000)]
Add two authors; make a correction in documentation
git-svn-id: https://svn.dealii.org/trunk@29475
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kronbichler [Tue, 7 May 2013 09:55:38 +0000 (09:55 +0000)]
Fix comment.
git-svn-id: https://svn.dealii.org/trunk@29474
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kronbichler [Tue, 7 May 2013 09:51:51 +0000 (09:51 +0000)]
Mention changes
git-svn-id: https://svn.dealii.org/trunk@29473
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kronbichler [Tue, 7 May 2013 09:50:33 +0000 (09:50 +0000)]
Fix early success in Bicgstab: Should not scale residual by norm of rhs vector b because that should be - if at all - be part of the termination tolerance. This should fix test case lac/bicgstab_large. Adjust output in a few Bicgstab tests.
git-svn-id: https://svn.dealii.org/trunk@29472
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kronbichler [Tue, 7 May 2013 07:57:38 +0000 (07:57 +0000)]
Remove obsolete include file
git-svn-id: https://svn.dealii.org/trunk@29471
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kronbichler [Tue, 7 May 2013 07:01:29 +0000 (07:01 +0000)]
Make test work
git-svn-id: https://svn.dealii.org/trunk@29470
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kainan.wang [Mon, 6 May 2013 22:20:06 +0000 (22:20 +0000)]
More changes at dof_tools.cc
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29469
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bangerth [Mon, 6 May 2013 22:18:42 +0000 (22:18 +0000)]
Instantiate FETools::interpolate for general vector types.
git-svn-id: https://svn.dealii.org/trunk@29468
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kronbichler [Mon, 6 May 2013 20:17:53 +0000 (20:17 +0000)]
Add expected output
git-svn-id: https://svn.dealii.org/trunk@29467
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kronbichler [Mon, 6 May 2013 20:16:54 +0000 (20:16 +0000)]
Add a test (that currently fails) showing that early success in Bicgstab solver is not handled correctly when large numbers are present
git-svn-id: https://svn.dealii.org/trunk@29466
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kronbichler [Mon, 6 May 2013 19:52:31 +0000 (19:52 +0000)]
Save one temporary vector in Bicgstab.
git-svn-id: https://svn.dealii.org/trunk@29465
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kronbichler [Mon, 6 May 2013 19:51:19 +0000 (19:51 +0000)]
Choose to adaptively re-orthogonalize in GMRES, which cuts the number of inner products into one half for most applications. Add proper tests.
git-svn-id: https://svn.dealii.org/trunk@29464
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kronbichler [Mon, 6 May 2013 19:51:08 +0000 (19:51 +0000)]
Actually test right preconditioning.
git-svn-id: https://svn.dealii.org/trunk@29463
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bangerth [Mon, 6 May 2013 02:43:55 +0000 (02:43 +0000)]
List Kevin Dugan's thesis.
git-svn-id: https://svn.dealii.org/trunk@29462
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bangerth [Mon, 6 May 2013 02:40:05 +0000 (02:40 +0000)]
Add Guido's address.
git-svn-id: https://svn.dealii.org/trunk@29460
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bangerth [Mon, 6 May 2013 02:39:26 +0000 (02:39 +0000)]
Minor edits.
git-svn-id: https://svn.dealii.org/trunk@29459
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turcksin [Sun, 5 May 2013 19:05:50 +0000 (19:05 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29458
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bangerth [Sun, 5 May 2013 14:07:48 +0000 (14:07 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@29457
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bangerth [Sun, 5 May 2013 11:21:44 +0000 (11:21 +0000)]
Document better.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29456
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bangerth [Sun, 5 May 2013 11:06:22 +0000 (11:06 +0000)]
Explain better.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29455
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maier [Sat, 4 May 2013 08:56:07 +0000 (08:56 +0000)]
CMake: Also install deal.tag
git-svn-id: https://svn.dealii.org/trunk@29454
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kainan.wang [Sat, 4 May 2013 05:06:10 +0000 (05:06 +0000)]
Make several changes in dof_tools
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29453
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turcksin [Fri, 3 May 2013 20:23:03 +0000 (20:23 +0000)]
Temporary fix for compress. Ideally all the ::dealii::VectorOperation::unknown will be taken out.
git-svn-id: https://svn.dealii.org/trunk@29449
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turcksin [Fri, 3 May 2013 17:45:40 +0000 (17:45 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29448
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turcksin [Fri, 3 May 2013 15:28:59 +0000 (15:28 +0000)]
Delete useless std::cout.
git-svn-id: https://svn.dealii.org/trunk@29447
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heister [Fri, 3 May 2013 15:15:18 +0000 (15:15 +0000)]
fix Trilinos SparseMatrix adding instead of inserting entries in parallel. Also leave a todo.
git-svn-id: https://svn.dealii.org/trunk@29446
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heister [Fri, 3 May 2013 15:08:16 +0000 (15:08 +0000)]
clean up test
git-svn-id: https://svn.dealii.org/trunk@29445
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heister [Fri, 3 May 2013 14:48:13 +0000 (14:48 +0000)]
make test fail (bug in Trilinos)
git-svn-id: https://svn.dealii.org/trunk@29444
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bangerth [Fri, 3 May 2013 02:10:28 +0000 (02:10 +0000)]
Add one.
git-svn-id: https://svn.dealii.org/trunk@29443
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young [Thu, 2 May 2013 20:18:40 +0000 (20:18 +0000)]
Build in assertions...
git-svn-id: https://svn.dealii.org/trunk@29432
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bangerth [Thu, 2 May 2013 15:25:44 +0000 (15:25 +0000)]
Do not use std::numeric_limits on enum types -- max() is always zero
in that case...
git-svn-id: https://svn.dealii.org/trunk@29431
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turcksin [Thu, 2 May 2013 14:24:19 +0000 (14:24 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29430
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heister [Thu, 2 May 2013 14:20:14 +0000 (14:20 +0000)]
fix 2d test
git-svn-id: https://svn.dealii.org/trunk@29429
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heister [Thu, 2 May 2013 14:18:39 +0000 (14:18 +0000)]
fix p4est assert from yesterday
git-svn-id: https://svn.dealii.org/trunk@29428
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kronbichler [Thu, 2 May 2013 13:50:37 +0000 (13:50 +0000)]
Enable multithreading.
git-svn-id: https://svn.dealii.org/trunk@29427
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kronbichler [Thu, 2 May 2013 13:48:22 +0000 (13:48 +0000)]
Enable multithreading by default.
git-svn-id: https://svn.dealii.org/trunk@29426
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heister [Thu, 2 May 2013 01:28:28 +0000 (01:28 +0000)]
add 2d test (does not trigger the right error)
git-svn-id: https://svn.dealii.org/trunk@29425
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heister [Thu, 2 May 2013 01:12:44 +0000 (01:12 +0000)]
add test for p4est max refinement level
git-svn-id: https://svn.dealii.org/trunk@29424
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heister [Thu, 2 May 2013 01:12:05 +0000 (01:12 +0000)]
throw exception if p4est maximum refinement level is reached
git-svn-id: https://svn.dealii.org/trunk@29423
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bangerth [Wed, 1 May 2013 23:47:07 +0000 (23:47 +0000)]
Fix poor markup.
git-svn-id: https://svn.dealii.org/trunk@29422
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bangerth [Wed, 1 May 2013 23:03:42 +0000 (23:03 +0000)]
More comments.
git-svn-id: https://svn.dealii.org/trunk@29421
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bangerth [Wed, 1 May 2013 23:01:59 +0000 (23:01 +0000)]
Better formatting of documentation.
git-svn-id: https://svn.dealii.org/trunk@29420
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bangerth [Wed, 1 May 2013 21:24:00 +0000 (21:24 +0000)]
Provide better documentation.
git-svn-id: https://svn.dealii.org/trunk@29419
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bangerth [Wed, 1 May 2013 12:35:10 +0000 (12:35 +0000)]
Comment on the fact that VTK is a legacy format. People should be using VTU instead.
git-svn-id: https://svn.dealii.org/trunk@29417
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turcksin [Tue, 30 Apr 2013 20:25:20 +0000 (20:25 +0000)]
Fix some bugs in the tutorial steps.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29416
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bangerth [Tue, 30 Apr 2013 19:10:25 +0000 (19:10 +0000)]
ParameterHandler::set(., bool) which was broken, see bug #49.
git-svn-id: https://svn.dealii.org/trunk@29415
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bangerth [Tue, 30 Apr 2013 16:48:34 +0000 (16:48 +0000)]
Rename variable in inner scope to avoid clash with outer scope.
git-svn-id: https://svn.dealii.org/trunk@29414
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bangerth [Tue, 30 Apr 2013 16:48:16 +0000 (16:48 +0000)]
Do operation in the correct type.
git-svn-id: https://svn.dealii.org/trunk@29413
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bangerth [Tue, 30 Apr 2013 16:38:38 +0000 (16:38 +0000)]
Add missing include files.
git-svn-id: https://svn.dealii.org/trunk@29412
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bangerth [Tue, 30 Apr 2013 16:21:59 +0000 (16:21 +0000)]
Fix accidental checkin of merge conflict marker :-(
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29411
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bangerth [Tue, 30 Apr 2013 16:03:02 +0000 (16:03 +0000)]
Remove accidental double-semicolons (is that a colon, then?).
git-svn-id: https://svn.dealii.org/trunk@29410
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bangerth [Tue, 30 Apr 2013 15:18:49 +0000 (15:18 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29409
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kronbichler [Tue, 30 Apr 2013 14:56:37 +0000 (14:56 +0000)]
Make partial initialization work properly, including a minimum functionality in case of no index initializations.
git-svn-id: https://svn.dealii.org/trunk@29408
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turcksin [Tue, 30 Apr 2013 14:36:42 +0000 (14:36 +0000)]
Fix a mpi test.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29407
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kronbichler [Tue, 30 Apr 2013 14:11:19 +0000 (14:11 +0000)]
Simplify FullMatrix::Tmmult and FullMatrix::mTmult in case the two input matrices are the same.
git-svn-id: https://svn.dealii.org/trunk@29406
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maier [Tue, 30 Apr 2013 09:11:08 +0000 (09:11 +0000)]
CMake: Fix a typo that prevented user supplied shared linker flags from being used
git-svn-id: https://svn.dealii.org/trunk@29405
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maier [Tue, 30 Apr 2013 07:34:23 +0000 (07:34 +0000)]
CMake: Small cleanup in check_*, take over r29403 to trunk
git-svn-id: https://svn.dealii.org/trunk@29404
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bangerth [Tue, 30 Apr 2013 03:38:44 +0000 (03:38 +0000)]
Disable the flag -Wa,--compress-debug-sections for Intel compilers. It turned out to be impossible to determine under which circumstances it may or may not work.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29403
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bangerth [Tue, 30 Apr 2013 03:37:40 +0000 (03:37 +0000)]
Suppress several more of Intel's warnings.
git-svn-id: https://svn.dealii.org/trunk@29402
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heister [Mon, 29 Apr 2013 20:34:30 +0000 (20:34 +0000)]
add my email
git-svn-id: https://svn.dealii.org/trunk@29401
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bangerth [Mon, 29 Apr 2013 16:05:18 +0000 (16:05 +0000)]
Link to video lectures. Reshuffle links so that the most frequently used ones are at the top.
git-svn-id: https://svn.dealii.org/trunk@29400
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bangerth [Mon, 29 Apr 2013 16:03:10 +0000 (16:03 +0000)]
Avoid font confusion.
git-svn-id: https://svn.dealii.org/trunk@29399
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turcksin [Mon, 29 Apr 2013 15:30:10 +0000 (15:30 +0000)]
Fix a bug in number of global active cells.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29398
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bangerth [Mon, 29 Apr 2013 14:42:42 +0000 (14:42 +0000)]
Augment documentation to explain a common mistake.
git-svn-id: https://svn.dealii.org/trunk@29397
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bangerth [Mon, 29 Apr 2013 14:14:29 +0000 (14:14 +0000)]
Add my email address.
git-svn-id: https://svn.dealii.org/trunk@29396
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bangerth [Mon, 29 Apr 2013 14:12:13 +0000 (14:12 +0000)]
Remove outdated comment.
git-svn-id: https://svn.dealii.org/trunk@29395
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maier [Mon, 29 Apr 2013 13:30:11 +0000 (13:30 +0000)]
Update the license information in readme.html and license.html
git-svn-id: https://svn.dealii.org/trunk@29394
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bangerth [Sun, 28 Apr 2013 23:24:25 +0000 (23:24 +0000)]
List 'and others' as authors of the deal.II website.
git-svn-id: https://svn.dealii.org/trunk@29393
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bangerth [Sun, 28 Apr 2013 20:04:35 +0000 (20:04 +0000)]
Link to the tethex project to convert meshes.
git-svn-id: https://svn.dealii.org/trunk@29392
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bangerth [Sun, 28 Apr 2013 18:01:29 +0000 (18:01 +0000)]
Fix typo.
git-svn-id: https://svn.dealii.org/trunk@29391
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maier [Sat, 27 Apr 2013 19:39:21 +0000 (19:39 +0000)]
CMake: Introduce a VERSION that will be queried for the version number
git-svn-id: https://svn.dealii.org/trunk@29390
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bangerth [Sat, 27 Apr 2013 01:03:10 +0000 (01:03 +0000)]
Work around a problem with some compilers.
git-svn-id: https://svn.dealii.org/trunk@29389
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turcksin [Fri, 26 Apr 2013 13:56:50 +0000 (13:56 +0000)]
Merge from mainline.
git-svn-id: https://svn.dealii.org/branches/branch_bigger_global_dof_indices_4@29388
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bangerth [Thu, 25 Apr 2013 15:22:50 +0000 (15:22 +0000)]
Adjust output to what it should have been all along.
git-svn-id: https://svn.dealii.org/trunk@29386
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bangerth [Thu, 25 Apr 2013 15:20:04 +0000 (15:20 +0000)]
Adjust output to what it should have been all along.
git-svn-id: https://svn.dealii.org/trunk@29385
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maier [Wed, 24 Apr 2013 18:07:55 +0000 (18:07 +0000)]
CMake: Query for Trilinos packages in a sane manner
git-svn-id: https://svn.dealii.org/trunk@29384
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bangerth [Wed, 24 Apr 2013 15:53:38 +0000 (15:53 +0000)]
Set flags, width, precision directly on the underlying stream object.
git-svn-id: https://svn.dealii.org/trunk@29383
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heister [Wed, 24 Apr 2013 15:06:51 +0000 (15:06 +0000)]
add test for trilinos matrix
git-svn-id: https://svn.dealii.org/trunk@29382
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bangerth [Wed, 24 Apr 2013 14:49:17 +0000 (14:49 +0000)]
Set stream properties only once, rather than every time we access the stream.
git-svn-id: https://svn.dealii.org/trunk@29381
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kronbichler [Wed, 24 Apr 2013 12:48:38 +0000 (12:48 +0000)]
Put matrix-free worker functions in internal namespace to allow for reuse of them in several places.
git-svn-id: https://svn.dealii.org/trunk@29380
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bangerth [Wed, 24 Apr 2013 11:47:54 +0000 (11:47 +0000)]
Reintroduce a statement that (I believe) has caused hundreds of testsuite failures.
git-svn-id: https://svn.dealii.org/trunk@29379
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bangerth [Tue, 23 Apr 2013 14:46:08 +0000 (14:46 +0000)]
Back out the significant part of the previous change to this class in
hopes of bringing test results back to normal.
git-svn-id: https://svn.dealii.org/trunk@29376
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bangerth [Tue, 23 Apr 2013 11:36:38 +0000 (11:36 +0000)]
Patch by Fahad Alrashed: Save and restore print state in PETScWrappers::VectorBase::print.
git-svn-id: https://svn.dealii.org/trunk@29372
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young [Tue, 23 Apr 2013 11:25:31 +0000 (11:25 +0000)]
A more descriptive documentation for the TransformationBase classes.
git-svn-id: https://svn.dealii.org/trunk@29371
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young [Tue, 23 Apr 2013 11:08:30 +0000 (11:08 +0000)]
New function set_target_eigenvalue and minor API tweaks.
git-svn-id: https://svn.dealii.org/trunk@29370
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heltai [Tue, 23 Apr 2013 09:38:44 +0000 (09:38 +0000)]
Fixed bug in FESystem. With 5 components, only 4 where actually generated.
git-svn-id: https://svn.dealii.org/trunk@29369
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maier [Tue, 23 Apr 2013 08:46:55 +0000 (08:46 +0000)]
CMake: Remove setup_cpack.cmake. We'll do packaging by hand.
git-svn-id: https://svn.dealii.org/trunk@29368
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