https://gitweb.dealii.org/ - dealii-svn.git/log

]> https://gitweb.dealii.org/ - dealii-svn.git/log

heister [Thu, 2 Dec 2010 11:37:40 +0000 (11:37 +0000)]

improve PETSc compiler mismatch error messages.

git-svn-id: https://svn.dealii.org/trunk@22902 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Thu, 2 Dec 2010 11:10:12 +0000 (11:10 +0000)]

Fix get compiler bug in mpi consistency for PETSc 2.3.x

git-svn-id: https://svn.dealii.org/trunk@22901 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Thu, 2 Dec 2010 11:03:21 +0000 (11:03 +0000)]

Fix bug in mpi consistency for PETSc 2.3.x

git-svn-id: https://svn.dealii.org/trunk@22900 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Thu, 2 Dec 2010 10:48:05 +0000 (10:48 +0000)]

Fix bug in mpi consistency for PETSc 2.3.x

git-svn-id: https://svn.dealii.org/trunk@22899 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Thu, 2 Dec 2010 08:15:41 +0000 (08:15 +0000)]

Update news on publication

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bangerth [Thu, 2 Dec 2010 05:00:34 +0000 (05:00 +0000)]

A better gravity model.

git-svn-id: https://svn.dealii.org/trunk@22897 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 2 Dec 2010 00:34:04 +0000 (00:34 +0000)]

Clarify what I mean by center.

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bangerth [Thu, 2 Dec 2010 00:33:26 +0000 (00:33 +0000)]

Minor formula fix.

git-svn-id: https://svn.dealii.org/trunk@22895 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 1 Dec 2010 23:47:10 +0000 (23:47 +0000)]

Remove a lot of debug and timing output stuff.

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bangerth [Wed, 1 Dec 2010 20:21:18 +0000 (20:21 +0000)]

Fix a couple places that cppcheck marked up.

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bangerth [Wed, 1 Dec 2010 14:34:26 +0000 (14:34 +0000)]

Disable the following warning in xlC: 1540-2909 (W) The subscript 2 is out of range. The only valid subscript is 0.

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bangerth [Wed, 1 Dec 2010 14:27:37 +0000 (14:27 +0000)]

Using --without-umfpack is equivalent to --with-umfpack=no and made ./configure believe that we should look for an external umfpack version at path 'no'.

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bangerth [Tue, 30 Nov 2010 16:59:19 +0000 (16:59 +0000)]

Remove various benchmarking features.

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young [Tue, 30 Nov 2010 10:33:04 +0000 (10:33 +0000)]

Fix missing block for doxygen

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bangerth [Tue, 30 Nov 2010 04:52:18 +0000 (04:52 +0000)]

Add a missing instantiation.

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bangerth [Tue, 30 Nov 2010 04:45:36 +0000 (04:45 +0000)]

Initialize member variable to avoid warning by ICC.

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bangerth [Mon, 29 Nov 2010 23:48:38 +0000 (23:48 +0000)]

The intel compiler wants us to initialize each const member.

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bangerth [Mon, 29 Nov 2010 21:56:40 +0000 (21:56 +0000)]

Also instantiate the dummy parallel::distributed::Triangulation class when not using p4est so that icc doesn't complain about missing typeinfo symbols.

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bangerth [Mon, 29 Nov 2010 21:34:27 +0000 (21:34 +0000)]

Really only instantiate functions that aren't explicitly specialized.

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bangerth [Mon, 29 Nov 2010 21:24:09 +0000 (21:24 +0000)]

Do not include functions in explicit instantiations that are explicitly specialized.

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bangerth [Mon, 29 Nov 2010 20:10:43 +0000 (20:10 +0000)]

Fix table of contents; add one more sentence.

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kanschat [Mon, 29 Nov 2010 17:49:46 +0000 (17:49 +0000)]

adjust to moved operators

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kanschat [Mon, 29 Nov 2010 17:17:26 +0000 (17:17 +0000)]

move grad_div to Divergence

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kanschat [Mon, 29 Nov 2010 17:09:02 +0000 (17:09 +0000)]

mov Differential to more appropriate Divergence

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kanschat [Mon, 29 Nov 2010 17:06:44 +0000 (17:06 +0000)]

remove name tag

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buerg [Mon, 29 Nov 2010 17:06:16 +0000 (17:06 +0000)]

Delete shapes.cc

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buerg [Mon, 29 Nov 2010 17:01:11 +0000 (17:01 +0000)]

Splitting of the test fe/shapes due to run-time limitations.

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kanschat [Mon, 29 Nov 2010 16:49:16 +0000 (16:49 +0000)]

add normal fluxes and fix jump

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bangerth [Mon, 29 Nov 2010 15:30:26 +0000 (15:30 +0000)]

Add a note on the difference between using the symmetric gradient or the
straight one.

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young [Mon, 29 Nov 2010 10:52:39 +0000 (10:52 +0000)]

Check for MPI consistency between deal.II and PETSc. Note: This only does the check if MPI is requested at configure time, otherwise, check for PETSc's libmpiuni library

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kanschat [Mon, 29 Nov 2010 01:32:09 +0000 (01:32 +0000)]

update documentation

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kanschat [Sun, 28 Nov 2010 23:21:29 +0000 (23:21 +0000)]

cleanup

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kanschat [Sun, 28 Nov 2010 23:20:00 +0000 (23:20 +0000)]

add default constructor for MGDoFHandler

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kanschat [Sun, 28 Nov 2010 23:19:04 +0000 (23:19 +0000)]

begin operators for LDG

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kanschat [Sun, 28 Nov 2010 21:02:19 +0000 (21:02 +0000)]

Add some info on the notational conventions for integral operators

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kanschat [Sun, 28 Nov 2010 20:53:16 +0000 (20:53 +0000)]

use @ instead of \

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kanschat [Sun, 28 Nov 2010 20:47:29 +0000 (20:47 +0000)]

allow doxygen to find the symbol... although it is probably an undocumented class anyway

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kanschat [Sun, 28 Nov 2010 20:29:46 +0000 (20:29 +0000)]

mention namespaces in first paragraph

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bangerth [Sat, 27 Nov 2010 00:33:29 +0000 (00:33 +0000)]

Add a section on what happens when you try to synchronize tasks.

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bangerth [Sat, 27 Nov 2010 00:08:52 +0000 (00:08 +0000)]

Add a new test that currently deadlocks.

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kronbichler [Fri, 26 Nov 2010 14:43:55 +0000 (14:43 +0000)]

Trilinos vector reinit should now be safe also with MPI.

git-svn-id: https://svn.dealii.org/trunk@22862 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 26 Nov 2010 14:36:05 +0000 (14:36 +0000)]

Undo patch 22849, i.e., now it is safe to nest tasks. However, do this only when there is enough to do so the task scheduling overhead doesn't matter.

git-svn-id: https://svn.dealii.org/trunk@22861 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Fri, 26 Nov 2010 13:57:55 +0000 (13:57 +0000)]

Can not use mutex or condition variables when joining a task: If new tasks are scheduled but no free threads, the worker can never start, while the master is blocked. Let TBB handle the task management even in join().

git-svn-id: https://svn.dealii.org/trunk@22860 0785d39b-7218-0410-832d-ea1e28bc413d

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kanschat [Thu, 25 Nov 2010 17:03:16 +0000 (17:03 +0000)]

Add warning about nested ThreadGroup objects

git-svn-id: https://svn.dealii.org/trunk@22859 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 25 Nov 2010 05:00:53 +0000 (05:00 +0000)]

Remove files that have been pointless for quite a while now.

git-svn-id: https://svn.dealii.org/trunk@22858 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 24 Nov 2010 22:27:58 +0000 (22:27 +0000)]

Fix reference to man page.

git-svn-id: https://svn.dealii.org/trunk@22857 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 24 Nov 2010 20:25:38 +0000 (20:25 +0000)]

Trying to interpolate boundary values on a closed loop 1d mesh in 2d resulted in an infinite loop. This should now be fixed.

git-svn-id: https://svn.dealii.org/trunk@22856 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 24 Nov 2010 15:01:47 +0000 (15:01 +0000)]

Remove the Software doxygen module -- it was pretty outdated, and it duplicates the master copy of supported external software in the readme.html file.

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bangerth [Wed, 24 Nov 2010 14:50:46 +0000 (14:50 +0000)]

Reorder order of directories: in debug mode, these are the files with
the longest compute time:

0m13s lac/chunk_sparse_matrix.cc
0m14s numerics/derivative_approximation.cc
0m15s dofs/dof_renumbering.cc
0m15s fe/fe_tools.cc
0m15s numerics/mesh_worker_vector_selector.cc
0m16s grid/grid_tools.cc
0m16s numerics/error_estimator.cc
0m17s grid/tria.cc
0m21s numerics/solution_transfer.cc
0m23s dofs/dof_accessor.cc
0m28s lac/sparse_matrix.cc
0m31s dofs/dof_tools.cc
0m40s numerics/vectors.cc
0m52s fe/fe_values.cc
1m14s numerics/data_out.cc

In optimized mode it is this way:
0.27s dofs/dof_renumbering.cc
0.27s lac/precondition_block.cc
0.28s numerics/derivative_approximation.cc
0.28s numerics/mesh_worker_vector_selector.cc
0.32s base/data_out_base.cc
0.33s numerics/fe_field_function.cc
0.37s lac/chunk_sparse_matrix.cc
0.38s grid/tria.cc
0.45s lac/sparse_matrix.cc
0.49s numerics/error_estimator.cc
0.57s dofs/dof_accessor.cc
1.19s dofs/dof_tools.cc
1.28s numerics/data_out.cc
2.55s fe/fe_values.cc
3.31s numerics/vectors.cc

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bangerth [Wed, 24 Nov 2010 13:28:03 +0000 (13:28 +0000)]

Ugh, fix syntax.

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bangerth [Wed, 24 Nov 2010 13:16:41 +0000 (13:16 +0000)]

Fix grammar.

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bangerth [Wed, 24 Nov 2010 13:02:14 +0000 (13:02 +0000)]

Correctly qualify function.

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bangerth [Wed, 24 Nov 2010 13:00:20 +0000 (13:00 +0000)]

doxygen 1.7.2 no longer wants to create the output directory itself. Do so when necessary.

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salgado [Wed, 24 Nov 2010 03:57:08 +0000 (03:57 +0000)]

Guido & AJS fix. You cannot nest task loops

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bangerth [Wed, 24 Nov 2010 03:08:51 +0000 (03:08 +0000)]

Replace \vec by \mathbf consistently.

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bangerth [Wed, 24 Nov 2010 03:02:48 +0000 (03:02 +0000)]

Fix a couple markups.

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bangerth [Wed, 24 Nov 2010 02:54:00 +0000 (02:54 +0000)]

Add Chih-Che's comments.

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bangerth [Tue, 23 Nov 2010 04:34:25 +0000 (04:34 +0000)]

Add the actual file.

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bangerth [Tue, 23 Nov 2010 02:19:01 +0000 (02:19 +0000)]

Rename.

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bangerth [Tue, 23 Nov 2010 02:18:43 +0000 (02:18 +0000)]

Add.

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bangerth [Mon, 22 Nov 2010 23:55:08 +0000 (23:55 +0000)]

step-32 is not ready so far.

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bangerth [Mon, 22 Nov 2010 23:44:33 +0000 (23:44 +0000)]

Update after boost upgrade.

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bangerth [Mon, 22 Nov 2010 22:28:16 +0000 (22:28 +0000)]

Make sure the include/ directory is in the include path.

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bangerth [Mon, 22 Nov 2010 19:42:54 +0000 (19:42 +0000)]

Update after boost upgrade.

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bangerth [Mon, 22 Nov 2010 16:11:38 +0000 (16:11 +0000)]

Move into place.

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bangerth [Mon, 22 Nov 2010 15:34:32 +0000 (15:34 +0000)]

Remove old version of boost.

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bangerth [Mon, 22 Nov 2010 15:28:51 +0000 (15:28 +0000)]

Patches to avoid warnings and errors, some taken over from previous versions of BOOST in our tree, some new.

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bangerth [Mon, 22 Nov 2010 15:07:06 +0000 (15:07 +0000)]

add

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bangerth [Sun, 21 Nov 2010 02:47:43 +0000 (02:47 +0000)]

A couple more tests.

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bangerth [Sun, 21 Nov 2010 02:40:21 +0000 (02:40 +0000)]

Add comment.

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bangerth [Sun, 21 Nov 2010 02:37:25 +0000 (02:37 +0000)]

Announce VectorTools::interpolate_boundary_values for codim=1.

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bangerth [Sun, 21 Nov 2010 02:29:21 +0000 (02:29 +0000)]

Add missing function DoFAccessor<0,1,spacedim>::vertex_dof_index.

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bangerth [Sat, 20 Nov 2010 22:37:23 +0000 (22:37 +0000)]

Move test now that it works.

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bangerth [Sat, 20 Nov 2010 22:34:28 +0000 (22:34 +0000)]

Make VectorTools::interpolate_boundary_values work for codim=1, at least for 2d triangulations.

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bangerth [Sat, 20 Nov 2010 00:08:58 +0000 (00:08 +0000)]

Simplify code slightly.

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bangerth [Sat, 20 Nov 2010 00:06:45 +0000 (00:06 +0000)]

Simplify code slightly.

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kanschat [Sat, 20 Nov 2010 00:00:06 +0000 (00:00 +0000)]

add relaxation methods to preconditioner module

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bangerth [Fri, 19 Nov 2010 23:59:51 +0000 (23:59 +0000)]

Simplify code a bit.

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bangerth [Fri, 19 Nov 2010 20:21:29 +0000 (20:21 +0000)]

The data type of the unit_tangentials should be a Tensor<1,dim>, not Tensor<1,spacedim>. With this change, rewrite code in such a way that we can now build FEFaceValues also for the case <2,3>, though we still get missing symbols elsewhere.

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bangerth [Fri, 19 Nov 2010 16:36:35 +0000 (16:36 +0000)]

Minor re-indenting while reading through the class. Change the lovely
word "reduplicate" into "duplicate" ;-)

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kronbichler [Fri, 19 Nov 2010 16:15:56 +0000 (16:15 +0000)]

Compile the directories with files with long compile times first.

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kanschat [Fri, 19 Nov 2010 15:03:17 +0000 (15:03 +0000)]

add transformation of vector fields and rearrange documentation from basic to hybrid

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buerg [Fri, 19 Nov 2010 07:33:46 +0000 (07:33 +0000)]

Fixed a bug in the Nedelec elements

git-svn-id: https://svn.dealii.org/trunk@22820 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 19 Nov 2010 03:21:53 +0000 (03:21 +0000)]

Reindent a couple places.

git-svn-id: https://svn.dealii.org/trunk@22819 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 19 Nov 2010 02:14:17 +0000 (02:14 +0000)]

Remove unused argument.

git-svn-id: https://svn.dealii.org/trunk@22818 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 19 Nov 2010 01:53:58 +0000 (01:53 +0000)]

Upgrade to TBB 3.0. This fixes a bunch of testsuite failures on our new 48-core machine.

git-svn-id: https://svn.dealii.org/trunk@22817 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 19 Nov 2010 01:35:52 +0000 (01:35 +0000)]

One more change.

git-svn-id: https://svn.dealii.org/trunk@22816 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 19 Nov 2010 01:32:45 +0000 (01:32 +0000)]

Take over patches from TBB 22 copy in our tree.

git-svn-id: https://svn.dealii.org/trunk@22815 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 19 Nov 2010 01:26:33 +0000 (01:26 +0000)]

Remove tests directory.

git-svn-id: https://svn.dealii.org/trunk@22814 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 19 Nov 2010 01:21:29 +0000 (01:21 +0000)]

Add TBB 3.0 update 3 (commercially aligned open source release).

git-svn-id: https://svn.dealii.org/trunk@22813 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 19 Nov 2010 00:12:16 +0000 (00:12 +0000)]

Fix the mess I created: the whole rearranging I did earlier meant that
we couldn't do any anisotropic refinement any more -- which happens
internally when building some of the elements.

git-svn-id: https://svn.dealii.org/trunk@22812 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 18 Nov 2010 22:16:29 +0000 (22:16 +0000)]

Interestingly, mesh refinement of surfaces in higher spaces produced the wrong result for cells that lie at the boundary of the surface (the new point at the center of a quad was computed from the surrounding vertices, rather than from the surface description). Fix this.

git-svn-id: https://svn.dealii.org/trunk@22811 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 18 Nov 2010 21:06:37 +0000 (21:06 +0000)]

Add an assertion.

git-svn-id: https://svn.dealii.org/trunk@22810 0785d39b-7218-0410-832d-ea1e28bc413d

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pauletti [Thu, 18 Nov 2010 17:37:27 +0000 (17:37 +0000)]

Extracting a piece of the boundary of the sphere does not seem
to project some nodes properly

git-svn-id: https://svn.dealii.org/trunk@22809 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 18 Nov 2010 17:27:18 +0000 (17:27 +0000)]

New test.

git-svn-id: https://svn.dealii.org/trunk@22808 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 18 Nov 2010 17:13:37 +0000 (17:13 +0000)]

Adjust comment.

git-svn-id: https://svn.dealii.org/trunk@22807 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 18 Nov 2010 17:08:55 +0000 (17:08 +0000)]

Trim output.

git-svn-id: https://svn.dealii.org/trunk@22806 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 18 Nov 2010 17:03:29 +0000 (17:03 +0000)]

Allow computing the linfty norm even for ghosted vectors.

git-svn-id: https://svn.dealii.org/trunk@22805 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 18 Nov 2010 16:23:24 +0000 (16:23 +0000)]

In output_results, we were using a ghosted vector to assemble a solution vector that contained the Boussinesq solution plus all sorts of other stuff. But we've since disallowed writing into ghosted vectors, so this didn't work any more. Instead now write into a non-ghosted vector and later created a ghosted version of it for output through DataOut.

git-svn-id: https://svn.dealii.org/trunk@22804 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 18 Nov 2010 15:54:19 +0000 (15:54 +0000)]

Add another note.

git-svn-id: https://svn.dealii.org/trunk@22803 0785d39b-7218-0410-832d-ea1e28bc413d

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