]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
4 years agoFix matrix-free pre/post loops with threads
Martin Kronbichler [Fri, 8 May 2020 09:39:15 +0000 (11:39 +0200)]
Fix matrix-free pre/post loops with threads

4 years agoMerge pull request #10078 from bangerth/typo
Martin Kronbichler [Fri, 8 May 2020 05:05:39 +0000 (07:05 +0200)]
Merge pull request #10078 from bangerth/typo

Fix a grammar error.

4 years agoFix a grammar error. 10078/head
Wolfgang Bangerth [Fri, 8 May 2020 04:21:54 +0000 (22:21 -0600)]
Fix a grammar error.

4 years agoMerge pull request #10074 from drwells/double-word-typos-2
Daniel Arndt [Fri, 8 May 2020 03:35:32 +0000 (23:35 -0400)]
Merge pull request #10074 from drwells/double-word-typos-2

4 years agoMerge pull request #10075 from drwells/run-codespell
Daniel Arndt [Fri, 8 May 2020 03:35:15 +0000 (23:35 -0400)]
Merge pull request #10075 from drwells/run-codespell

4 years agoRun codespell. 10075/head
David Wells [Fri, 8 May 2020 02:05:29 +0000 (22:05 -0400)]
Run codespell.

4 years agoRemove double word typos. 10074/head
David Wells [Fri, 8 May 2020 01:36:11 +0000 (21:36 -0400)]
Remove double word typos.

4 years agoMerge pull request #10046 from bangerth/vec
Matthias Maier [Thu, 7 May 2020 23:27:20 +0000 (18:27 -0500)]
Merge pull request #10046 from bangerth/vec

Augment the documentation of operator<< for Vector.

4 years agoMerge pull request #10047 from bangerth/cxx
Matthias Maier [Thu, 7 May 2020 23:25:51 +0000 (18:25 -0500)]
Merge pull request #10047 from bangerth/cxx

Better document C++11/14/17/20.

4 years agoMerge pull request #10062 from kronbichler/fix_read_dof_values_plain
Matthias Maier [Thu, 7 May 2020 23:24:11 +0000 (18:24 -0500)]
Merge pull request #10062 from kronbichler/fix_read_dof_values_plain

Fix bug in FEFaceEvaluation::read_dof_values_plain

4 years agoMerge pull request #10066 from jppelteret/sd-llvm_patch_01
Matthias Maier [Thu, 7 May 2020 23:22:45 +0000 (18:22 -0500)]
Merge pull request #10066 from jppelteret/sd-llvm_patch_01

Disable a fallback option in the BatchOptimizer

4 years agoDisable a fallback option in the BatchOptimizer 10066/head
Jean-Paul Pelteret [Thu, 7 May 2020 21:58:07 +0000 (23:58 +0200)]
Disable a fallback option in the BatchOptimizer

This is what is promised in the documentation, and I forgot to change the behaviour everywhere.

4 years agoMerge pull request #10056 from jppelteret/fevalues_dof_idx_rbl-tuts
Daniel Arndt [Thu, 7 May 2020 21:13:09 +0000 (17:13 -0400)]
Merge pull request #10056 from jppelteret/fevalues_dof_idx_rbl-tuts

4 years agoMerge pull request #10063 from jppelteret/sd-doc_04
Bruno Turcksin [Thu, 7 May 2020 20:13:03 +0000 (16:13 -0400)]
Merge pull request #10063 from jppelteret/sd-doc_04

4 years agoMerge pull request #10050 from rezarastak/mark_lapack
Daniel Arndt [Thu, 7 May 2020 20:06:23 +0000 (16:06 -0400)]
Merge pull request #10050 from rezarastak/mark_lapack

4 years agoMerge pull request #10053 from Rombur/overlap_comm
Peter Munch [Thu, 7 May 2020 19:17:11 +0000 (21:17 +0200)]
Merge pull request #10053 from Rombur/overlap_comm

CUDA matrix-free: overlap communication and computation

4 years agoChangelog 10062/head
Martin Kronbichler [Thu, 7 May 2020 15:08:41 +0000 (17:08 +0200)]
Changelog

4 years agoTest case
Martin Kronbichler [Thu, 7 May 2020 15:08:31 +0000 (17:08 +0200)]
Test case

4 years agoConvert step-44 to use FEValues range based loops 10056/head
Jean-Paul Pelteret [Thu, 7 May 2020 06:23:05 +0000 (08:23 +0200)]
Convert step-44 to use FEValues range based loops

4 years agoImprove documentation of a BatchOptimizer function 10063/head
Jean-Paul Pelteret [Thu, 7 May 2020 17:19:16 +0000 (19:19 +0200)]
Improve documentation of a BatchOptimizer function

4 years agoSome tests depend on lapack 10050/head
Reza Rastak [Wed, 6 May 2020 23:29:09 +0000 (16:29 -0700)]
Some tests depend on lapack

4 years agoMerge pull request #10059 from bangerth/changelog
Martin Kronbichler [Thu, 7 May 2020 15:20:18 +0000 (17:20 +0200)]
Merge pull request #10059 from bangerth/changelog

Add a changelog entry.

4 years agoFix bug in FEFaceEvaluation::read_dof_values_plain
Martin Kronbichler [Thu, 7 May 2020 15:08:18 +0000 (17:08 +0200)]
Fix bug in FEFaceEvaluation::read_dof_values_plain

4 years agoMerge pull request #9978 from mwichro/fix_FE_interface_for_mg
Luca Heltai [Thu, 7 May 2020 14:06:36 +0000 (16:06 +0200)]
Merge pull request #9978 from mwichro/fix_FE_interface_for_mg

Fix FEInterface for MG support

4 years agoAdd changelog entry 10053/head
Bruno Turcksin [Thu, 7 May 2020 01:45:51 +0000 (21:45 -0400)]
Add changelog entry

4 years agoOverlap communication and computation
Bruno Turcksin [Wed, 15 Apr 2020 02:08:59 +0000 (02:08 +0000)]
Overlap communication and computation

4 years agoExtend documentation
Bruno Turcksin [Tue, 21 Apr 2020 18:23:13 +0000 (18:23 +0000)]
Extend documentation

4 years agoAdd a changelog entry. 10059/head
Wolfgang Bangerth [Thu, 7 May 2020 12:19:33 +0000 (06:19 -0600)]
Add a changelog entry.

4 years agoMerge pull request #10033 from rezarastak/remove_tol
Martin Kronbichler [Thu, 7 May 2020 11:10:00 +0000 (13:10 +0200)]
Merge pull request #10033 from rezarastak/remove_tol

The tolerance parameter is removed from project_tensor

4 years agoMerge pull request #10051 from tamiko/fix_a_test_3
Martin Kronbichler [Thu, 7 May 2020 11:08:24 +0000 (13:08 +0200)]
Merge pull request #10051 from tamiko/fix_a_test_3

fe/memory_consumption_01: remove test

4 years agoMerge pull request #10055 from tamiko/fix_a_test_6
Martin Kronbichler [Thu, 7 May 2020 11:07:53 +0000 (13:07 +0200)]
Merge pull request #10055 from tamiko/fix_a_test_6

rol/vector_adaptor_02: port to Trilinos 12.18.1

4 years agoMerge pull request #10054 from tamiko/fix_a_test_5
Martin Kronbichler [Thu, 7 May 2020 11:07:12 +0000 (13:07 +0200)]
Merge pull request #10054 from tamiko/fix_a_test_5

serialization/fe_series_0?: Add test variants for libc++

4 years agoMerge pull request #10052 from tamiko/fix_a_test_4
Martin Kronbichler [Thu, 7 May 2020 11:06:42 +0000 (13:06 +0200)]
Merge pull request #10052 from tamiko/fix_a_test_4

mpi/petsc_step-27*: add a test variant for petsc-3.13 and newer

4 years agoConvert steps 3,4,5,6,8 to FEValues::dof_indices()Do some FeValues::quadrature_point_...
Jean-Paul Pelteret [Thu, 7 May 2020 06:10:57 +0000 (08:10 +0200)]
Convert steps 3,4,5,6,8 to FEValues::dof_indices()Do some FeValues::quadrature_point_indices() conversions as well.

4 years agoMerge pull request #10048 from tamiko/fix_a_test_2
Martin Kronbichler [Thu, 7 May 2020 09:02:09 +0000 (11:02 +0200)]
Merge pull request #10048 from tamiko/fix_a_test_2

base/utilities_pack_unpack_07: make test more robust

4 years agoMerge pull request #9990 from jppelteret/fevalues_dof_idx_rbl
Daniel Arndt [Thu, 7 May 2020 03:46:03 +0000 (23:46 -0400)]
Merge pull request #9990 from jppelteret/fevalues_dof_idx_rbl

4 years agofe/memory_consumption - remove test 10051/head
Matthias Maier [Thu, 7 May 2020 02:30:12 +0000 (21:30 -0500)]
fe/memory_consumption - remove test

Remove a stray memory consumption test

4 years agorol/vector_adaptor_02: port to Trilinos 12.18.1 10055/head
Matthias Maier [Thu, 7 May 2020 02:23:07 +0000 (21:23 -0500)]
rol/vector_adaptor_02: port to Trilinos 12.18.1

4 years agoserialization/fe_series_0?: Add test variants for libc++ 10054/head
Matthias Maier [Thu, 7 May 2020 01:57:39 +0000 (20:57 -0500)]
serialization/fe_series_0?: Add test variants for libc++

The order of the coefficients stored internally in FESeries::Fourier are
not stable wrt standard library. Just add a test variant.

4 years agompi/petsc_step-27*: add a test variant for petsc-3.13 and newer 10052/head
Matthias Maier [Thu, 7 May 2020 01:35:54 +0000 (20:35 -0500)]
mpi/petsc_step-27*: add a test variant for petsc-3.13 and newer

4 years agoadd a comment 10048/head
Matthias Maier [Thu, 7 May 2020 01:12:01 +0000 (20:12 -0500)]
add a comment

4 years agoMerge pull request #10028 from jppelteret/sd-batch_optimiser
Bruno Turcksin [Wed, 6 May 2020 23:57:44 +0000 (19:57 -0400)]
Merge pull request #10028 from jppelteret/sd-batch_optimiser

4 years agoFix FEInterface for MG support 9978/head
Michal Wichrowski [Tue, 28 Apr 2020 14:12:01 +0000 (16:12 +0200)]
Fix FEInterface for MG support

Indetation

4 years agoMerge pull request #10036 from starki0815/hp_dof_handler_tria_base
Daniel Arndt [Wed, 6 May 2020 22:58:17 +0000 (18:58 -0400)]
Merge pull request #10036 from starki0815/hp_dof_handler_tria_base

4 years agoMerge pull request #10042 from bangerth/formula
Daniel Arndt [Wed, 6 May 2020 22:57:39 +0000 (18:57 -0400)]
Merge pull request #10042 from bangerth/formula

4 years agoMerge pull request #10034 from starki0815/hanging_node_hp_instantiations
Luca Heltai [Wed, 6 May 2020 22:39:16 +0000 (00:39 +0200)]
Merge pull request #10034 from starki0815/hanging_node_hp_instantiations

Add codim 1 instantiations of make_hanging_node_constraints()

4 years agoUpdate physics tests to use cell DoF range based loop 9990/head
Jean-Paul Pelteret [Wed, 29 Apr 2020 20:54:30 +0000 (22:54 +0200)]
Update physics tests to use cell DoF range based loop

4 years agoUpdate physics tests to use QP range based loop
Jean-Paul Pelteret [Wed, 29 Apr 2020 20:38:40 +0000 (22:38 +0200)]
Update physics tests to use QP range based loop

4 years agoAdd range based loops for DoF indices to FEValuesBase
Jean-Paul Pelteret [Wed, 29 Apr 2020 19:08:49 +0000 (21:08 +0200)]
Add range based loops for DoF indices to FEValuesBase

4 years agoImprove wording. 10042/head
Wolfgang Bangerth [Tue, 5 May 2020 22:23:56 +0000 (16:23 -0600)]
Improve wording.

4 years agoClarify what this class actually computes.
Wolfgang Bangerth [Tue, 5 May 2020 21:39:56 +0000 (15:39 -0600)]
Clarify what this class actually computes.

4 years agoImprove the formatting of a formula in a .h file.
Wolfgang Bangerth [Tue, 5 May 2020 21:34:13 +0000 (15:34 -0600)]
Improve the formatting of a formula in a .h file.

This doesn't change the output, just whether or not it's readable in the
source file. It isn't right now :-)

4 years agoBetter document C++11/14/17/20. 10047/head
Wolfgang Bangerth [Wed, 6 May 2020 16:17:54 +0000 (10:17 -0600)]
Better document C++11/14/17/20.

4 years agoMerge pull request #10049 from nfehn/print_parameters
Wolfgang Bangerth [Wed, 6 May 2020 21:38:05 +0000 (23:38 +0200)]
Merge pull request #10049 from nfehn/print_parameters

clarify documentation of print_parameters()

4 years agoAllow hp::DoFHandler with parallel::DistributedTriangulationBase 10036/head
Sebastian Stark [Mon, 16 Sep 2019 07:56:55 +0000 (09:56 +0200)]
Allow hp::DoFHandler with parallel::DistributedTriangulationBase

This allows the distribution of dofs for an hp::DoFHandler combined with a triangulation class derived from parallel::DistributedTriangulationBase other than parallel::distributed::Triangulation.
This makes it possible to handle the triangulation without p4est (e.g. manual partitioning).

4 years agoclarify documentation of print_parameters() 10049/head
Niklas Fehn [Wed, 6 May 2020 17:18:46 +0000 (19:18 +0200)]
clarify documentation of print_parameters()

4 years agoAdd codim 1 instantiations of make_hanging_node_constraints() 10034/head
Sebastian Stark [Mon, 17 Dec 2018 11:51:07 +0000 (13:51 +0200)]
Add codim 1 instantiations of make_hanging_node_constraints()

4 years agobase/utilities_pack_unpack_07: make test more robust
Matthias Maier [Wed, 6 May 2020 16:29:50 +0000 (11:29 -0500)]
base/utilities_pack_unpack_07: make test more robust

4 years agoAugment the documentation of operator<< for Vector. 10046/head
Wolfgang Bangerth [Wed, 6 May 2020 15:41:02 +0000 (09:41 -0600)]
Augment the documentation of operator<< for Vector.

4 years agoMerge pull request #10039 from bangerth/vector-op
Daniel Arndt [Wed, 6 May 2020 15:33:29 +0000 (11:33 -0400)]
Merge pull request #10039 from bangerth/vector-op

4 years agoMerge pull request #10044 from rezarastak/prefer_discrete_time
Wolfgang Bangerth [Wed, 6 May 2020 15:14:06 +0000 (17:14 +0200)]
Merge pull request #10044 from rezarastak/prefer_discrete_time

DiscreteTime is preferred over TimestepControl

4 years agoMerge pull request #10045 from tjhei/add_missing_override
Daniel Arndt [Wed, 6 May 2020 14:42:41 +0000 (10:42 -0400)]
Merge pull request #10045 from tjhei/add_missing_override

4 years agoMerge pull request #10035 from starki0815/mesh_refinement_codim_1
Daniel Arndt [Wed, 6 May 2020 14:35:20 +0000 (10:35 -0400)]
Merge pull request #10035 from starki0815/mesh_refinement_codim_1

4 years agoMerge pull request #9930 from tjhei/ci_tidy_clang10
Daniel Arndt [Wed, 6 May 2020 13:11:41 +0000 (09:11 -0400)]
Merge pull request #9930 from tjhei/ci_tidy_clang10

4 years agoadd missing override in MatrixFree LaplaceOperator 10045/head
Timo Heister [Wed, 6 May 2020 12:42:36 +0000 (08:42 -0400)]
add missing override in MatrixFree LaplaceOperator

4 years agoUse transfinite interpolation for codim 1 refinement 10035/head
Sebastian Stark [Sun, 3 May 2020 08:51:59 +0000 (10:51 +0200)]
Use transfinite interpolation for codim 1 refinement

For a Triangulation<2,3>, the middle vertices are now determined by transfinite interpolation. This makes the refinement behavior of the triangulation consistent with Triangulation<3,3> (where the middle vertices during quad refinement are determined by transfinite interpolation)

4 years agoMerge pull request #10041 from bangerth/ref
Daniel Arndt [Wed, 6 May 2020 04:11:30 +0000 (00:11 -0400)]
Merge pull request #10041 from bangerth/ref

4 years agoMove a reference to references.bib. 10041/head
Wolfgang Bangerth [Tue, 5 May 2020 21:28:13 +0000 (15:28 -0600)]
Move a reference to references.bib.

4 years agoMerge pull request #9997 from jppelteret/mesh_loop_01
Wolfgang Bangerth [Wed, 6 May 2020 03:58:56 +0000 (05:58 +0200)]
Merge pull request #9997 from jppelteret/mesh_loop_01

Remove MeshWorker::CopyData::operator=(double)

4 years agoDiscreteTime is prefered over TimestepControl 10044/head
Reza Rastak [Wed, 6 May 2020 03:50:09 +0000 (20:50 -0700)]
DiscreteTime is prefered over TimestepControl

4 years agoFix meshworker tests 9997/head
Jean-Paul Pelteret [Tue, 5 May 2020 21:21:30 +0000 (23:21 +0200)]
Fix meshworker tests

4 years agoMerge pull request #10030 from bangerth/tut
Jean-Paul Pelteret [Tue, 5 May 2020 21:34:24 +0000 (23:34 +0200)]
Merge pull request #10030 from bangerth/tut

Add a reference to the code gallery.

4 years agoMerge pull request #10038 from drwells/remove-nonascii-math
Jean-Paul Pelteret [Tue, 5 May 2020 21:29:48 +0000 (23:29 +0200)]
Merge pull request #10038 from drwells/remove-nonascii-math

Remove some non-ascii characters.

4 years agoMerge pull request #9076 from luca-heltai/particle-interpolation-sparsity-matrix
Wolfgang Bangerth [Tue, 5 May 2020 21:18:18 +0000 (23:18 +0200)]
Merge pull request #9076 from luca-heltai/particle-interpolation-sparsity-matrix

Particle interpolation sparsity matrix

4 years agoMark constructor for CopyData as explicit
Jean-Paul Pelteret [Tue, 5 May 2020 20:19:57 +0000 (22:19 +0200)]
Mark constructor for CopyData as explicit

4 years agoRemove MeshWorker::CopyData::operator=(double)
Jean-Paul Pelteret [Thu, 30 Apr 2020 22:02:52 +0000 (00:02 +0200)]
Remove MeshWorker::CopyData::operator=(double)

4 years agoAugment documentation of mesh_loop()
Jean-Paul Pelteret [Thu, 30 Apr 2020 21:58:57 +0000 (23:58 +0200)]
Augment documentation of mesh_loop()

4 years agoAdd another test for mesh_loop
Jean-Paul Pelteret [Thu, 30 Apr 2020 21:58:42 +0000 (23:58 +0200)]
Add another test for mesh_loop

4 years agoMerge pull request #10040 from drwells/more-doxygen-fixes
Wolfgang Bangerth [Tue, 5 May 2020 19:54:12 +0000 (21:54 +0200)]
Merge pull request #10040 from drwells/more-doxygen-fixes

Fix some more doxygen issues.

4 years agoFix some more doxygen issues. 10040/head
David Wells [Tue, 5 May 2020 19:06:58 +0000 (15:06 -0400)]
Fix some more doxygen issues.

1. I now get a warning about paper sizes with doxygen 1.8.18:

warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value
Using the default: a4!

   Get around this by just using a4.

2. My LaTeX distribution already defines vcentcolon, so rename our own version
   to dealvcentcolon to preserve compatibility with older tex distributions.

3. Use mathrm instead of text to get underscores to work correctly with
   backslashes with both MathJax and LaTeX. This is the solution we use
   elsewhere in the library.

4 years agoAdd SD tests: Batch optimiser 10028/head
Jean-Paul Pelteret [Thu, 2 Apr 2020 12:14:42 +0000 (14:14 +0200)]
Add SD tests: Batch optimiser

4 years agoAdd SD tests: Common subexpression elimination
Jean-Paul Pelteret [Thu, 2 Apr 2020 12:14:15 +0000 (14:14 +0200)]
Add SD tests: Common subexpression elimination

4 years agoUpdate AD/SD module documentation
Jean-Paul Pelteret [Sun, 3 May 2020 21:28:34 +0000 (23:28 +0200)]
Update AD/SD module documentation

4 years agoAdd BatchOptimizer for symbolic expressions
Jean-Paul Pelteret [Thu, 2 Apr 2020 09:25:59 +0000 (11:25 +0200)]
Add BatchOptimizer for symbolic expressions

4 years agoRemove some non-ascii characters. 10038/head
David Wells [Tue, 5 May 2020 16:10:32 +0000 (12:10 -0400)]
Remove some non-ascii characters.

My copy of pdflatex does not like (i.e., I cannot compile the doxygen-generated
file _formulas.tex) math statements with unicode MINUS SIGN instead of the old
ASCII HYPHEN-MINUS. While here I also switched out RIGHT SINGLE QUOTATION MARK
for (also ASCII) APOSTROPHE and made a few other small changes.

We should be, in general, able to use unicode in our documentation outside of
math mode so I didn't change those usages unless they seemed gramatically
incorrect to me (like using the right quotation mark instead of an apostrophe).

4 years agoFixed review comments. 9076/head
Luca Heltai [Tue, 5 May 2020 15:33:58 +0000 (17:33 +0200)]
Fixed review comments.

4 years agoApply suggestions from code review
Luca Heltai [Tue, 5 May 2020 15:10:01 +0000 (17:10 +0200)]
Apply suggestions from code review

Co-authored-by: Daniel Arndt <arndtd@ornl.gov>
4 years agoAdd a changelog file. 10039/head
Wolfgang Bangerth [Tue, 5 May 2020 14:46:05 +0000 (08:46 -0600)]
Add a changelog file.

4 years agoUpdate tests and test outputs.
Wolfgang Bangerth [Tue, 5 May 2020 14:42:38 +0000 (08:42 -0600)]
Update tests and test outputs.

4 years agoImplement operator<<(ostream,Vector) in a better way.
Wolfgang Bangerth [Tue, 5 May 2020 14:42:25 +0000 (08:42 -0600)]
Implement operator<<(ostream,Vector) in a better way.

4 years agoMerge pull request #9391 from peterrum/pft_settings
Luca Heltai [Tue, 5 May 2020 13:09:58 +0000 (15:09 +0200)]
Merge pull request #9391 from peterrum/pft_settings

Refactor settings of p:f:t

4 years agoMerge pull request #9847 from peterrum/nonconti_update_ghost_values
Martin Kronbichler [Tue, 5 May 2020 10:54:47 +0000 (12:54 +0200)]
Merge pull request #9847 from peterrum/nonconti_update_ghost_values

Rename NoncontiguousPartitioner::update_values()

4 years agoMerge pull request #9998 from bangerth/discrete-time
Luca Heltai [Tue, 5 May 2020 07:57:56 +0000 (09:57 +0200)]
Merge pull request #9998 from bangerth/discrete-time

Minor updates to the DiscreteTime class documentation.

4 years agoMerge pull request #10032 from masterleinad/suppres_more_tbb
Wolfgang Bangerth [Tue, 5 May 2020 03:33:53 +0000 (05:33 +0200)]
Merge pull request #10032 from masterleinad/suppres_more_tbb

Suppress more TBB warnings

4 years agoThe tolerance parameter is removed from project_tensor 10033/head
Reza Rastak [Tue, 5 May 2020 02:18:19 +0000 (19:18 -0700)]
The tolerance parameter is removed from project_tensor

4 years agodisable performance-no-automatic-move 9930/head
Timo Heister [Tue, 5 May 2020 02:00:03 +0000 (22:00 -0400)]
disable performance-no-automatic-move

4 years agonolint std::bind
Timo Heister [Thu, 30 Apr 2020 19:19:19 +0000 (15:19 -0400)]
nolint std::bind

4 years agoarchive log file
Timo Heister [Tue, 21 Apr 2020 14:56:21 +0000 (10:56 -0400)]
archive log file

4 years agoCI: update clang-tidy to clang10
Timo Heister [Mon, 20 Apr 2020 15:25:26 +0000 (11:25 -0400)]
CI: update clang-tidy to clang10

4 years agoSuppress more TBB warnings 10032/head
Daniel Arndt [Tue, 5 May 2020 01:49:15 +0000 (21:49 -0400)]
Suppress more TBB warnings


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