]>
https://gitweb.dealii.org/ - dealii.git/log
Wolfgang Bangerth [Sat, 12 Jul 2014 12:57:51 +0000 (12:57 +0000)]
Work around a bug in PETSc whereby PETSc does not zero-initialize ghost elements of a vector.
git-svn-id: https://svn.dealii.org/trunk@33142
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Wolfgang Bangerth [Fri, 11 Jul 2014 22:49:55 +0000 (22:49 +0000)]
Provide more links to video lectures.
git-svn-id: https://svn.dealii.org/trunk@33141
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Wolfgang Bangerth [Fri, 11 Jul 2014 22:17:53 +0000 (22:17 +0000)]
Annotate some of the programs with links to the video lectures.
git-svn-id: https://svn.dealii.org/trunk@33140
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Bruno Turcksin [Fri, 11 Jul 2014 17:06:38 +0000 (17:06 +0000)]
Fix a bug when using 64bit indices.
git-svn-id: https://svn.dealii.org/trunk@33137
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Wolfgang Bangerth [Fri, 11 Jul 2014 02:42:41 +0000 (02:42 +0000)]
Go through the rest of the introduction, the results section and some of the program. Make minor adjustments.
git-svn-id: https://svn.dealii.org/trunk@33135
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Wolfgang Bangerth [Fri, 11 Jul 2014 02:42:35 +0000 (02:42 +0000)]
Remove a file we have not needed for a long time.
git-svn-id: https://svn.dealii.org/trunk@33134
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Wolfgang Bangerth [Fri, 11 Jul 2014 02:42:30 +0000 (02:42 +0000)]
Group functions for more readable documentation.
git-svn-id: https://svn.dealii.org/trunk@33133
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Wolfgang Bangerth [Fri, 11 Jul 2014 02:42:25 +0000 (02:42 +0000)]
Update documentation in a couple of places. Remove some code duplication.
git-svn-id: https://svn.dealii.org/trunk@33132
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Matthias Maier [Thu, 10 Jul 2014 14:34:02 +0000 (14:34 +0000)]
Reindent script files
git-svn-id: https://svn.dealii.org/trunk@33131
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Martin Kronbichler [Wed, 9 Jul 2014 14:46:35 +0000 (14:46 +0000)]
Make sure to generate all necessary symbols
git-svn-id: https://svn.dealii.org/trunk@33126
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Wolfgang Bangerth [Wed, 9 Jul 2014 13:05:58 +0000 (13:05 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@33125
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Wolfgang Bangerth [Wed, 9 Jul 2014 12:57:33 +0000 (12:57 +0000)]
Reindent.
git-svn-id: https://svn.dealii.org/trunk@33124
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Wolfgang Bangerth [Wed, 9 Jul 2014 12:57:07 +0000 (12:57 +0000)]
Add notes for MUMPS.
git-svn-id: https://svn.dealii.org/trunk@33123
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Wolfgang Bangerth [Wed, 9 Jul 2014 11:57:03 +0000 (11:57 +0000)]
Document how to compile Trilinos with direct solvers.
git-svn-id: https://svn.dealii.org/trunk@33122
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Wolfgang Bangerth [Wed, 9 Jul 2014 11:54:27 +0000 (11:54 +0000)]
Document how to compile Trilinos with direct solvers.
git-svn-id: https://svn.dealii.org/trunk@33121
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Martin Kronbichler [Wed, 9 Jul 2014 10:17:13 +0000 (10:17 +0000)]
Extend comment of direct solver class
git-svn-id: https://svn.dealii.org/trunk@33120
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Martin Kronbichler [Wed, 9 Jul 2014 08:57:26 +0000 (08:57 +0000)]
Use alias to refer to multithreaded methods.
git-svn-id: https://svn.dealii.org/trunk@33119
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Martin Kronbichler [Wed, 9 Jul 2014 08:33:16 +0000 (08:33 +0000)]
Try to avoid differences in roundoff by using weaker tolerance for Bicgstab solver
git-svn-id: https://svn.dealii.org/trunk@33118
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Martin Kronbichler [Wed, 9 Jul 2014 08:01:15 +0000 (08:01 +0000)]
Patch by Uwe Koecher: select among Trilinos solvers
git-svn-id: https://svn.dealii.org/trunk@33117
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Martin Kronbichler [Tue, 8 Jul 2014 08:19:47 +0000 (08:19 +0000)]
Document which basic linear algebra functions are currently multithreaded.
git-svn-id: https://svn.dealii.org/trunk@33116
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Wolfgang Bangerth [Mon, 7 Jul 2014 10:55:27 +0000 (10:55 +0000)]
Move the publications site to the top-level of dealii.org to provide it with a more 'corporate' feel.
git-svn-id: https://svn.dealii.org/trunk@33115
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Wolfgang Bangerth [Mon, 7 Jul 2014 10:52:15 +0000 (10:52 +0000)]
Fix markup.
git-svn-id: https://svn.dealii.org/trunk@33114
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Wolfgang Bangerth [Mon, 7 Jul 2014 09:11:03 +0000 (09:11 +0000)]
Add one.
git-svn-id: https://svn.dealii.org/trunk@33113
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Martin Kronbichler [Mon, 7 Jul 2014 08:33:06 +0000 (08:33 +0000)]
Update comment
git-svn-id: https://svn.dealii.org/trunk@33112
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Fahad Alrashed [Sat, 5 Jul 2014 17:57:10 +0000 (17:57 +0000)]
Fixed a couple of call changes for PETSc 3.5.0
git-svn-id: https://svn.dealii.org/trunk@33111
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Guido Kanschat [Fri, 4 Jul 2014 22:56:36 +0000 (22:56 +0000)]
write a debug file with the first residual even if we converge in one step
git-svn-id: https://svn.dealii.org/trunk@33110
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Martin Kronbichler [Fri, 4 Jul 2014 13:46:44 +0000 (13:46 +0000)]
Implement some new Trilinos preconditioner. Tests.
git-svn-id: https://svn.dealii.org/trunk@33109
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Wolfgang Bangerth [Fri, 4 Jul 2014 08:03:36 +0000 (08:03 +0000)]
Provide missing instantiations.
git-svn-id: https://svn.dealii.org/trunk@33108
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Wolfgang Bangerth [Thu, 3 Jul 2014 07:52:41 +0000 (07:52 +0000)]
Add two.
git-svn-id: https://svn.dealii.org/trunk@33107
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Wolfgang Bangerth [Wed, 2 Jul 2014 08:34:51 +0000 (08:34 +0000)]
Update output.
git-svn-id: https://svn.dealii.org/trunk@33106
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Wolfgang Bangerth [Tue, 1 Jul 2014 14:55:26 +0000 (14:55 +0000)]
Fix markup.
git-svn-id: https://svn.dealii.org/trunk@33105
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Daniel Arndt [Mon, 30 Jun 2014 23:49:21 +0000 (23:49 +0000)]
Fixed GridGenerator::merge_triangulations, Issue 197
git-svn-id: https://svn.dealii.org/trunk@33104
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Martin Kronbichler [Mon, 30 Jun 2014 19:21:56 +0000 (19:21 +0000)]
Fix test
git-svn-id: https://svn.dealii.org/trunk@33103
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Martin Kronbichler [Mon, 30 Jun 2014 11:50:56 +0000 (11:50 +0000)]
Avoid Epetra_MultiVector with 0 vectors
git-svn-id: https://svn.dealii.org/trunk@33102
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Wolfgang Bangerth [Mon, 30 Jun 2014 11:34:33 +0000 (11:34 +0000)]
Fix markup.
git-svn-id: https://svn.dealii.org/trunk@33101
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Wolfgang Bangerth [Mon, 30 Jun 2014 10:23:46 +0000 (10:23 +0000)]
Add another testcase that currently fails, see issue 197 (https://code.google.com/p/dealii/issues/detail?id=197).
git-svn-id: https://svn.dealii.org/trunk@33100
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Martin Kronbichler [Mon, 30 Jun 2014 10:23:34 +0000 (10:23 +0000)]
Commit bug in Trilinos precondition
git-svn-id: https://svn.dealii.org/trunk@33099
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Martin Kronbichler [Fri, 27 Jun 2014 20:31:28 +0000 (20:31 +0000)]
Simplify FEEvaluation routines considerably by merging all functionality into FEEvaluation. The internal implementation is done in internal::FEEvaluationImpl that provides the same efficient kernels as before, but frees the user from tedious selection of the appropriate kernel for the element in use.
git-svn-id: https://svn.dealii.org/trunk@33094
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Guido Kanschat [Thu, 26 Jun 2014 19:30:26 +0000 (19:30 +0000)]
add grad-div residual
git-svn-id: https://svn.dealii.org/trunk@33090
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Guido Kanschat [Thu, 26 Jun 2014 19:30:08 +0000 (19:30 +0000)]
add debugging function
git-svn-id: https://svn.dealii.org/trunk@33089
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Martin Kronbichler [Thu, 26 Jun 2014 12:05:54 +0000 (12:05 +0000)]
Need to keep constrained entries also when giving both row and column indices if so requested.
git-svn-id: https://svn.dealii.org/trunk@33087
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Matthias Maier [Thu, 26 Jun 2014 08:30:27 +0000 (08:30 +0000)]
Testsuite: Disable tests for Boost's Cuthill-McKee implementation
git-svn-id: https://svn.dealii.org/trunk@33086
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Matthias Maier [Wed, 25 Jun 2014 20:33:49 +0000 (20:33 +0000)]
CMake: Bugfix: Also add tbb specific include directories to the list of user include dirs
git-svn-id: https://svn.dealii.org/trunk@33085
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Daniel Arndt [Wed, 25 Jun 2014 11:47:16 +0000 (11:47 +0000)]
Improve readability of version detection for p4est and Trilinos
git-svn-id: https://svn.dealii.org/trunk@33083
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Martin Kronbichler [Tue, 24 Jun 2014 07:21:44 +0000 (07:21 +0000)]
Tentatively provide fix that chooses thread-safe assembly code path also in other cases with Trilinos version >= 11.9. However, it requires one more fix in Trilinos.
git-svn-id: https://svn.dealii.org/trunk@33082
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Daniel Arndt [Mon, 23 Jun 2014 16:16:57 +0000 (16:16 +0000)]
Removed the workaround for TrilinosWrappers::VectorBase::sadd when using different maps for version >=11.9, Issue 191
git-svn-id: https://svn.dealii.org/trunk@33081
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Guido Kanschat [Mon, 23 Jun 2014 09:52:13 +0000 (09:52 +0000)]
colorize hypercubes
git-svn-id: https://svn.dealii.org/trunk@33079
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Matthias Maier [Mon, 23 Jun 2014 08:12:40 +0000 (08:12 +0000)]
I'm proud to pass the 'CMake dunce cap' on to somebody else :->
git-svn-id: https://svn.dealii.org/trunk@33078
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Matthias Maier [Sun, 22 Jun 2014 20:39:54 +0000 (20:39 +0000)]
CMake: Port to version 3.0.0, part 1.
This commit sets the following policies to the old behaviour for CMake
3.0.0 or newer:
- CMP0026: We query the library target for its name via the LOCATION
property.
- CMP0037: We override the 'help' targets in case of the Makefile
generator. Because we can(tm).
git-svn-id: https://svn.dealii.org/trunk@33077
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Wolfgang Bangerth [Sun, 22 Jun 2014 12:54:28 +0000 (12:54 +0000)]
Require the current version of deal.II.
git-svn-id: https://svn.dealii.org/trunk@33076
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Wolfgang Bangerth [Sun, 22 Jun 2014 12:52:44 +0000 (12:52 +0000)]
Improve an error message.
git-svn-id: https://svn.dealii.org/trunk@33075
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Wolfgang Bangerth [Sun, 22 Jun 2014 11:41:17 +0000 (11:41 +0000)]
More minor adjustments.
git-svn-id: https://svn.dealii.org/trunk@33074
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Wolfgang Bangerth [Sun, 22 Jun 2014 11:37:58 +0000 (11:37 +0000)]
Remove duplicate coefficient.
git-svn-id: https://svn.dealii.org/trunk@33073
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Wolfgang Bangerth [Sun, 22 Jun 2014 11:29:53 +0000 (11:29 +0000)]
Explain purpose. Build on step-26.
git-svn-id: https://svn.dealii.org/trunk@33072
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Wolfgang Bangerth [Sun, 22 Jun 2014 11:27:56 +0000 (11:27 +0000)]
Start to look over step-52. Adjust step-26 accordingly.
git-svn-id: https://svn.dealii.org/trunk@33071
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Wolfgang Bangerth [Sun, 22 Jun 2014 02:33:09 +0000 (02:33 +0000)]
Add to the documentation in a couple of places.
git-svn-id: https://svn.dealii.org/trunk@33070
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Wolfgang Bangerth [Sun, 22 Jun 2014 02:32:55 +0000 (02:32 +0000)]
Escape a couple of words.
git-svn-id: https://svn.dealii.org/trunk@33069
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Wolfgang Bangerth [Sun, 22 Jun 2014 02:32:28 +0000 (02:32 +0000)]
Document in more detail what one line does and how to extend it.
git-svn-id: https://svn.dealii.org/trunk@33068
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Wolfgang Bangerth [Sun, 22 Jun 2014 02:31:06 +0000 (02:31 +0000)]
Document in more detail what one line does and how to extend it.
git-svn-id: https://svn.dealii.org/trunk@33067
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Guido Kanschat [Fri, 20 Jun 2014 15:39:05 +0000 (15:39 +0000)]
introduce function to set single components in mask
git-svn-id: https://svn.dealii.org/trunk@33066
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Guido Kanschat [Fri, 20 Jun 2014 14:44:39 +0000 (14:44 +0000)]
improve documentation and add a missing const
git-svn-id: https://svn.dealii.org/trunk@33065
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Wolfgang Bangerth [Thu, 19 Jun 2014 23:36:49 +0000 (23:36 +0000)]
Fix some indentation issues.
git-svn-id: https://svn.dealii.org/trunk@33064
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Wolfgang Bangerth [Thu, 19 Jun 2014 23:36:01 +0000 (23:36 +0000)]
Use correkt grammr.
git-svn-id: https://svn.dealii.org/trunk@33063
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Wolfgang Bangerth [Thu, 19 Jun 2014 23:34:38 +0000 (23:34 +0000)]
Patch by Denis Davydov: Introduce n_global_active_cells() also in dealii::Triangulation.
git-svn-id: https://svn.dealii.org/trunk@33062
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Wolfgang Bangerth [Thu, 19 Jun 2014 15:21:15 +0000 (15:21 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@33061
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Wolfgang Bangerth [Thu, 19 Jun 2014 07:23:45 +0000 (07:23 +0000)]
Improve error message and give some guidance on what to do.
git-svn-id: https://svn.dealii.org/trunk@33060
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Wolfgang Bangerth [Wed, 18 Jun 2014 15:03:08 +0000 (15:03 +0000)]
Provide information with many of the FEValues* functions about which update_* flag needs to be passed for the function to work. This was a common problem during the workshop.
git-svn-id: https://svn.dealii.org/trunk@33059
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Luca Heltai [Wed, 18 Jun 2014 12:49:43 +0000 (12:49 +0000)]
Fixed bug in delete_duplicated_vertices, which was running only up to dim instead of spacedim when considering distance.
git-svn-id: https://svn.dealii.org/trunk@33058
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Wolfgang Bangerth [Wed, 18 Jun 2014 05:01:45 +0000 (05:01 +0000)]
Fix missing space.
git-svn-id: https://svn.dealii.org/trunk@33057
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Wolfgang Bangerth [Tue, 17 Jun 2014 14:52:02 +0000 (14:52 +0000)]
Better markup.
git-svn-id: https://svn.dealii.org/trunk@33056
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Matthias Maier [Tue, 17 Jun 2014 12:56:38 +0000 (12:56 +0000)]
CMake: Cosmetic fixes wrt CMP0037 in CMake-3.0.0
- Suppress policy warning CMP0037 when using CMake-3.0.0, or newer
- restrict target redefinition to ".*Unix Makefiles" Generators
- Cleanup help messages to advertise "make info" instead of "make help"
git-svn-id: https://svn.dealii.org/trunk@33055
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Wolfgang Bangerth [Tue, 17 Jun 2014 11:23:30 +0000 (11:23 +0000)]
Improve documentation. Do not output the number of cells any more (only the number of active cells) because it is not often of great interest. Talk about it, though.
git-svn-id: https://svn.dealii.org/trunk@33054
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Wolfgang Bangerth [Tue, 17 Jun 2014 11:10:26 +0000 (11:10 +0000)]
Unify the use of spaces before () in one place.
git-svn-id: https://svn.dealii.org/trunk@33053
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Wolfgang Bangerth [Tue, 17 Jun 2014 07:08:07 +0000 (07:08 +0000)]
Adjust the name of the argument to make it clear that it refers to a
quadrature point.
git-svn-id: https://svn.dealii.org/trunk@33052
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Wolfgang Bangerth [Mon, 16 Jun 2014 16:08:15 +0000 (16:08 +0000)]
Improve markup.
git-svn-id: https://svn.dealii.org/trunk@33051
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Wolfgang Bangerth [Mon, 16 Jun 2014 15:41:14 +0000 (15:41 +0000)]
Fix some more broken markup.
git-svn-id: https://svn.dealii.org/trunk@33050
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Wolfgang Bangerth [Mon, 16 Jun 2014 15:07:34 +0000 (15:07 +0000)]
Fix a broken markup.
git-svn-id: https://svn.dealii.org/trunk@33049
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Wolfgang Bangerth [Mon, 16 Jun 2014 15:05:58 +0000 (15:05 +0000)]
Fill in a missing title.
git-svn-id: https://svn.dealii.org/trunk@33048
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Wolfgang Bangerth [Sun, 15 Jun 2014 15:46:13 +0000 (15:46 +0000)]
Patch by Michal Wichrowski: fix the same bug in a second place.
git-svn-id: https://svn.dealii.org/trunk@33047
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Wolfgang Bangerth [Sun, 15 Jun 2014 15:45:45 +0000 (15:45 +0000)]
Add some documentation and clarify an awkwardly explained concept.
git-svn-id: https://svn.dealii.org/trunk@33046
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Wolfgang Bangerth [Sun, 15 Jun 2014 14:29:18 +0000 (14:29 +0000)]
Provide some more instantiations for the codimension 1 case.
git-svn-id: https://svn.dealii.org/trunk@33045
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Wolfgang Bangerth [Sun, 15 Jun 2014 14:15:34 +0000 (14:15 +0000)]
Patch by Michal Wichrowski: Instantiate some functions for codimension 1.
git-svn-id: https://svn.dealii.org/trunk@33044
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Wolfgang Bangerth [Sun, 15 Jun 2014 13:31:56 +0000 (13:31 +0000)]
Patch by Denis Davydov: Triangulation::has_hanging_nodes() and similar in parallel::distributed::Triangulation.
git-svn-id: https://svn.dealii.org/trunk@33043
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Wolfgang Bangerth [Sun, 15 Jun 2014 13:31:37 +0000 (13:31 +0000)]
Patch by Denis Davydov: Triangulation::has_hanging_nodes() and similar in parallel::distributed::Triangulation.
git-svn-id: https://svn.dealii.org/trunk@33042
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Martin Kronbichler [Fri, 13 Jun 2014 15:28:01 +0000 (15:28 +0000)]
Make somewhat more general
git-svn-id: https://svn.dealii.org/trunk@33041
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Martin Kronbichler [Fri, 13 Jun 2014 12:01:42 +0000 (12:01 +0000)]
Implement FEEvaluation for FE_Q_DG0 elements
git-svn-id: https://svn.dealii.org/trunk@33040
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Martin Kronbichler [Thu, 12 Jun 2014 08:03:40 +0000 (08:03 +0000)]
Simplify TrilinosSparsityPattern::is_compressed(), add test
git-svn-id: https://svn.dealii.org/trunk@33039
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Wolfgang Bangerth [Thu, 12 Jun 2014 05:38:03 +0000 (05:38 +0000)]
Clarify documentation in a number of places.
git-svn-id: https://svn.dealii.org/trunk@33038
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Wolfgang Bangerth [Thu, 12 Jun 2014 05:20:11 +0000 (05:20 +0000)]
Add something to the documentation.
git-svn-id: https://svn.dealii.org/trunk@33037
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Wolfgang Bangerth [Thu, 12 Jun 2014 05:20:01 +0000 (05:20 +0000)]
Provide a function with the documentation it was previously missing.
git-svn-id: https://svn.dealii.org/trunk@33036
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Wolfgang Bangerth [Thu, 12 Jun 2014 05:19:56 +0000 (05:19 +0000)]
Remove a useless line, as pointed out by Denis Davydov.
git-svn-id: https://svn.dealii.org/trunk@33035
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Wolfgang Bangerth [Thu, 12 Jun 2014 05:19:51 +0000 (05:19 +0000)]
Fix typos.
git-svn-id: https://svn.dealii.org/trunk@33034
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Guido Kanschat [Wed, 11 Jun 2014 16:53:59 +0000 (16:53 +0000)]
documentation and formatting
git-svn-id: https://svn.dealii.org/trunk@33033
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Guido Kanschat [Wed, 11 Jun 2014 16:53:43 +0000 (16:53 +0000)]
add access to system element
git-svn-id: https://svn.dealii.org/trunk@33032
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Guido Kanschat [Wed, 11 Jun 2014 16:53:15 +0000 (16:53 +0000)]
remove empty lines in output
git-svn-id: https://svn.dealii.org/trunk@33031
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Guido Kanschat [Wed, 11 Jun 2014 09:47:28 +0000 (09:47 +0000)]
add instantiation
git-svn-id: https://svn.dealii.org/trunk@33030
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Guido Kanschat [Wed, 11 Jun 2014 09:23:31 +0000 (09:23 +0000)]
improve documentation
git-svn-id: https://svn.dealii.org/trunk@33029
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Wolfgang Bangerth [Sun, 8 Jun 2014 04:35:51 +0000 (04:35 +0000)]
Remove a note that only pertains to versions that are by now older than a year.
git-svn-id: https://svn.dealii.org/trunk@33027
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Wolfgang Bangerth [Sat, 7 Jun 2014 23:43:24 +0000 (23:43 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@33026
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Wolfgang Bangerth [Fri, 6 Jun 2014 18:48:02 +0000 (18:48 +0000)]
Fix bug #220: a few typos.
git-svn-id: https://svn.dealii.org/trunk@33025
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