]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
7 years agobugfix
Matthias Maier [Tue, 15 Aug 2017 21:35:29 +0000 (23:35 +0200)]
bugfix

7 years agoAdd CUDA setup to DEAL_II_INITIALIZE_CACHED_VARIABLES
Matthias Maier [Tue, 15 Aug 2017 06:39:52 +0000 (01:39 -0500)]
Add CUDA setup to DEAL_II_INITIALIZE_CACHED_VARIABLES

7 years agobugfix
Matthias Maier [Tue, 15 Aug 2017 06:34:08 +0000 (08:34 +0200)]
bugfix

7 years agoCMake: Update internal CUDA setup, remove obsolete code
Matthias Maier [Mon, 14 Aug 2017 22:39:26 +0000 (17:39 -0500)]
CMake: Update internal CUDA setup, remove obsolete code

Update internal CUDA setup to use native language features. If the
current CMake version is too old, fall back to the old behavior.

Further, remove obsolete CUDA configuration from tests.

7 years agoCMake: Restructure CUDA detection
Matthias Maier [Mon, 14 Aug 2017 22:35:55 +0000 (17:35 -0500)]
CMake: Restructure CUDA detection

This commit restructures the CUDA detection into its own FindCUDA.cmake
module. Further, CUDA support now requires CMake version 3.9 for proper
cmake-internal language support.

7 years agoMerge pull request #4833 from masterleinad/avoid_warning
Wolfgang Bangerth [Mon, 14 Aug 2017 20:31:56 +0000 (14:31 -0600)]
Merge pull request #4833 from masterleinad/avoid_warning

Avoid warnings related to the deprecation of types_are_equal

7 years agoMerge pull request #4829 from tjhei/mesh_loop_mg
Luca Heltai [Mon, 14 Aug 2017 20:15:36 +0000 (14:15 -0600)]
Merge pull request #4829 from tjhei/mesh_loop_mg

add mesh_loop GMG test

7 years agoMerge pull request #4794 from luca-heltai/new-find-active-cells-around-points
Timo Heister [Mon, 14 Aug 2017 20:15:04 +0000 (16:15 -0400)]
Merge pull request #4794 from luca-heltai/new-find-active-cells-around-points

New find active cells around point.

7 years agoMerge pull request #4844 from luca-heltai/enable-nanoflann-doc
Wolfgang Bangerth [Mon, 14 Aug 2017 20:09:26 +0000 (14:09 -0600)]
Merge pull request #4844 from luca-heltai/enable-nanoflann-doc

Add NANOFLANN to doxygen.

7 years agoMerge pull request #4842 from tjhei/enable_doxygen_for_cuda
Wolfgang Bangerth [Mon, 14 Aug 2017 20:09:01 +0000 (14:09 -0600)]
Merge pull request #4842 from tjhei/enable_doxygen_for_cuda

enable CUDA in doxygen

7 years agoAdded DEAL_II_WITH_NANOFLANN to doxygen. 4844/head
Luca Heltai [Mon, 14 Aug 2017 20:07:26 +0000 (14:07 -0600)]
Added DEAL_II_WITH_NANOFLANN to doxygen.

7 years agoenable CUDA in doxygen 4842/head
Timo Heister [Mon, 14 Aug 2017 20:06:38 +0000 (14:06 -0600)]
enable CUDA in doxygen

7 years agoMerge pull request #4841 from tamiko/kdtree_fixup
Luca Heltai [Mon, 14 Aug 2017 19:20:04 +0000 (13:20 -0600)]
Merge pull request #4841 from tamiko/kdtree_fixup

Bugfix: Make library compile with -DWITH_NANOFLANN=ON

7 years agoBugfix: Make library compile with -DWITH_NANOFLANN=ON 4841/head
Matthias Maier [Mon, 14 Aug 2017 19:17:05 +0000 (14:17 -0500)]
Bugfix: Make library compile with -DWITH_NANOFLANN=ON

We were missing a mandatory include in numerics/kdtree.h

7 years agoNew find active cell around point. 4794/head
Luca Heltai [Sat, 12 Aug 2017 21:53:32 +0000 (15:53 -0600)]
New find active cell around point.

7 years agoVertex to cells center directions.
Luca Heltai [Sat, 12 Aug 2017 21:53:13 +0000 (15:53 -0600)]
Vertex to cells center directions.

7 years agoGet closest vertex to cell.
Luca Heltai [Sat, 12 Aug 2017 21:52:49 +0000 (15:52 -0600)]
Get closest vertex to cell.

7 years agoMerge pull request #4831 from tamiko/remove_obsolete_check
David Wells [Mon, 14 Aug 2017 19:07:37 +0000 (15:07 -0400)]
Merge pull request #4831 from tamiko/remove_obsolete_check

CMake: Bugfix: Remove SuiteSparse_config PIC test

7 years agoMerge pull request #4837 from masterleinad/changelog_4834
Timo Heister [Mon, 14 Aug 2017 17:39:59 +0000 (13:39 -0400)]
Merge pull request #4837 from masterleinad/changelog_4834

Changelog entry for #4834

7 years agoMerge pull request #4821 from bangerth/fix-3
Timo Heister [Mon, 14 Aug 2017 17:38:58 +0000 (13:38 -0400)]
Merge pull request #4821 from bangerth/fix-3

Reverse template arguments to parallel::GridTools::exchange_cell_data_to_ghosts()

7 years agoAvoid warnings related to deprecation of types_are_equal 4833/head
Daniel Arndt [Mon, 14 Aug 2017 05:22:30 +0000 (07:22 +0200)]
Avoid warnings related to deprecation of types_are_equal

7 years agoChangelog entry for #4834 4837/head
Daniel Arndt [Mon, 14 Aug 2017 16:02:40 +0000 (18:02 +0200)]
Changelog entry for #4834

7 years agoadd mesh_loop GMG test 4829/head
Timo Heister [Mon, 14 Aug 2017 01:17:15 +0000 (19:17 -0600)]
add mesh_loop GMG test

7 years agoMerge pull request #4834 from masterleinad/deprecate_constraint_and_return_value
Wolfgang Bangerth [Mon, 14 Aug 2017 14:54:39 +0000 (08:54 -0600)]
Merge pull request #4834 from masterleinad/deprecate_constraint_and_return_value

Deprecate constraint_and_return_value in favor of std::enable_if

7 years agoMerge pull request #4830 from tamiko/guard_nanoflann_tests
Luca Heltai [Mon, 14 Aug 2017 07:36:18 +0000 (01:36 -0600)]
Merge pull request #4830 from tamiko/guard_nanoflann_tests

Bugfix: Only run kdtree tests if nanoflann is configured

7 years agoDeprecate constraint_and_return_value in favor of std::enable_if 4834/head
Daniel Arndt [Mon, 14 Aug 2017 05:21:36 +0000 (07:21 +0200)]
Deprecate constraint_and_return_value in favor of std::enable_if

7 years agoCMake: Bugfix: Remove SuiteSparse_config PIC test 4831/head
Matthias Maier [Mon, 14 Aug 2017 04:46:31 +0000 (23:46 -0500)]
CMake: Bugfix: Remove SuiteSparse_config PIC test

This is a 5 year old workaround for a very old Debian distribution.
Unfortunately, we run into problems with this PIC test - so simply
remove it.

7 years agoOnly run kdtree tests if nanoflann is configured 4830/head
Matthias Maier [Mon, 14 Aug 2017 04:38:02 +0000 (23:38 -0500)]
Only run kdtree tests if nanoflann is configured

7 years agoMerge pull request #4820 from tamiko/clean_up_logstream-3
Wolfgang Bangerth [Mon, 14 Aug 2017 03:47:14 +0000 (21:47 -0600)]
Merge pull request #4820 from tamiko/clean_up_logstream-3

LogStream: Remove timestamp machinery and memory_consumption

7 years agoMerge pull request #4825 from luca-heltai/kdtree
Matthias Maier [Mon, 14 Aug 2017 01:06:38 +0000 (20:06 -0500)]
Merge pull request #4825 from luca-heltai/kdtree

KDTree class.

7 years agoRemoved reference to deal3lkit, fixed KDTree names. 4825/head
Luca Heltai [Mon, 14 Aug 2017 00:40:36 +0000 (18:40 -0600)]
Removed reference to deal3lkit, fixed KDTree names.

7 years agoAddressed comments, renamed classes, externalized implementation
Luca Heltai [Mon, 14 Aug 2017 00:32:10 +0000 (18:32 -0600)]
Addressed comments, renamed classes, externalized implementation

7 years agoMerge pull request #4827 from drwells/skip-arrayview-test-old-boost
Matthias Maier [Mon, 14 Aug 2017 00:01:38 +0000 (19:01 -0500)]
Merge pull request #4827 from drwells/skip-arrayview-test-old-boost

Skip a type checking test on older boost versions.

7 years agoMerge pull request #4826 from masterleinad/fix_trilinos_prec
Matthias Maier [Mon, 14 Aug 2017 00:00:18 +0000 (19:00 -0500)]
Merge pull request #4826 from masterleinad/fix_trilinos_prec

Make trilinos/precondition more robust

7 years agoMake trilinos/precondition more robust 4826/head
Daniel Arndt [Sun, 13 Aug 2017 23:35:49 +0000 (01:35 +0200)]
Make trilinos/precondition more robust

7 years agoMerge pull request #4824 from tjhei/mesh_loop_test
Luca Heltai [Sun, 13 Aug 2017 23:48:51 +0000 (17:48 -0600)]
Merge pull request #4824 from tjhei/mesh_loop_test

Add mesh_loop parallel test and improve MPILogInitAll

7 years agoSkip a type checking test on older boost versions. 4827/head
David Wells [Sun, 13 Aug 2017 23:35:19 +0000 (19:35 -0400)]
Skip a type checking test on older boost versions.

Boost 1.57 does not correctly implement static_vector::const_iterator,
but newer versions of boost fix this problem.

7 years agoFixed indentation.
Luca Heltai [Sun, 13 Aug 2017 23:35:15 +0000 (17:35 -0600)]
Fixed indentation.

7 years agoChanged output arguments and added 3 tests.
Luca Heltai [Sun, 13 Aug 2017 23:30:22 +0000 (17:30 -0600)]
Changed output arguments and added 3 tests.

7 years agoAdd KDTreeDistance implementation
Luca Heltai [Sun, 13 Aug 2017 22:48:56 +0000 (16:48 -0600)]
Add KDTreeDistance implementation

7 years agoMerge pull request #4819 from drwells/deprecate-types-are-equal
David Wells [Sun, 13 Aug 2017 23:23:19 +0000 (19:23 -0400)]
Merge pull request #4819 from drwells/deprecate-types-are-equal

Deprecate types_are_equal.

7 years agoMerge pull request #4812 from davydden/test_fix
Timo Heister [Sun, 13 Aug 2017 23:13:55 +0000 (19:13 -0400)]
Merge pull request #4812 from davydden/test_fix

fix parpack unit test

7 years agoMerge pull request #4816 from masterleinad/revert_4762
Daniel Arndt [Sun, 13 Aug 2017 23:07:31 +0000 (01:07 +0200)]
Merge pull request #4816 from masterleinad/revert_4762

Document the default argument for the coefficient in the create_* functions

7 years agoDocument the default argument for the coefficient 4816/head
Daniel Arndt [Sun, 13 Aug 2017 18:26:41 +0000 (20:26 +0200)]
Document the default argument for the coefficient

7 years agoMerge pull request #4822 from bangerth/fix-4
Timo Heister [Sun, 13 Aug 2017 23:04:32 +0000 (19:04 -0400)]
Merge pull request #4822 from bangerth/fix-4

Better document what the ghost DoF index exchange does.

7 years agoMerge pull request #4823 from tjhei/mesh_loop_test_fix
Wolfgang Bangerth [Sun, 13 Aug 2017 23:00:03 +0000 (17:00 -0600)]
Merge pull request #4823 from tjhei/mesh_loop_test_fix

fix tests/meshworker/mesh_loop_*

7 years agofix tests/meshworker/mesh_loop_ 4823/head
Timo Heister [Sun, 13 Aug 2017 22:49:49 +0000 (18:49 -0400)]
fix tests/meshworker/mesh_loop_

7 years agoadd parallel mesh_loop test 4824/head
Timo Heister [Sun, 13 Aug 2017 22:33:02 +0000 (16:33 -0600)]
add parallel mesh_loop test

7 years agoReverse template arguments to parallel::GridTools::exchange_cell_data_to_ghosts(). 4821/head
Wolfgang Bangerth [Sun, 13 Aug 2017 21:49:31 +0000 (15:49 -0600)]
Reverse template arguments to parallel::GridTools::exchange_cell_data_to_ghosts().

7 years agoUpdate changelog 4820/head
Matthias Maier [Sun, 13 Aug 2017 21:49:54 +0000 (16:49 -0500)]
Update changelog

7 years agotests: Update to latest changes
Matthias Maier [Sun, 13 Aug 2017 21:44:29 +0000 (16:44 -0500)]
tests: Update to latest changes

7 years agoLogStream: Do not default to std::cerr, but std::cout
Matthias Maier [Sun, 13 Aug 2017 22:03:20 +0000 (17:03 -0500)]
LogStream: Do not default to std::cerr, but std::cout

7 years agoallow MPILogInitAll to be used more than once
Timo Heister [Sun, 13 Aug 2017 22:23:52 +0000 (16:23 -0600)]
allow MPILogInitAll to be used more than once

7 years agoMerge pull request #4775 from luca-heltai/meshloop
Wolfgang Bangerth [Sun, 13 Aug 2017 22:20:21 +0000 (16:20 -0600)]
Merge pull request #4775 from luca-heltai/meshloop

Mesh Loop.

7 years agoremove backticks 4775/head
Timo Heister [Sun, 13 Aug 2017 22:16:25 +0000 (16:16 -0600)]
remove backticks

7 years agoreset the CopyData object
Timo Heister [Sun, 13 Aug 2017 22:13:34 +0000 (16:13 -0600)]
reset the CopyData object

7 years agoaddress comments
Timo Heister [Sun, 13 Aug 2017 22:13:02 +0000 (16:13 -0600)]
address comments

7 years agoBetter document what the ghost DoF index exchange does. 4822/head
Wolfgang Bangerth [Sun, 13 Aug 2017 21:50:03 +0000 (15:50 -0600)]
Better document what the ghost DoF index exchange does.

While there, also tighten up the logic of what user flags we set, clear, and
when.

7 years agoLogStream: Remove timestamp machinery and memory_consumption
Matthias Maier [Sun, 13 Aug 2017 21:41:11 +0000 (16:41 -0500)]
LogStream: Remove timestamp machinery and memory_consumption

7 years agoDeprecate types_are_equal. 4819/head
David Wells [Sun, 13 Aug 2017 21:16:41 +0000 (17:16 -0400)]
Deprecate types_are_equal.

C++11 provides std::is_same, which has the same functionality.

7 years agoMerge pull request #4813 from tamiko/clean_up_logstream-2
Matthias Maier [Sun, 13 Aug 2017 19:39:32 +0000 (14:39 -0500)]
Merge pull request #4813 from tamiko/clean_up_logstream-2

LogStream: Remove log_cerr

7 years agoMerge pull request #4817 from bangerth/fix
Matthias Maier [Sun, 13 Aug 2017 19:36:52 +0000 (14:36 -0500)]
Merge pull request #4817 from bangerth/fix

Make DoFAccessor::set_active_fe_index() a 'const' function.

7 years agoMake DoFAccessor::set_active_fe_index() a 'const' function. 4817/head
Wolfgang Bangerth [Sun, 13 Aug 2017 19:21:43 +0000 (13:21 -0600)]
Make DoFAccessor::set_active_fe_index() a 'const' function.

We are not being very consistent in marking which DoFAccessor functions are 'const'
because it's difficult to actually define what 'const' would mean: does it change
the accessor, or does it change the DoFHandler it points to. As a consequence,
the TriaAccessor member functions are *all* const, but the DoFAccessor functions
are more or less random.

Rather than attacking this problem altogether, I'm making the minimal change that
solves the problem I currently have.

7 years agoMerge pull request #4815 from jppelteret/move_sacado_header_tests
Wolfgang Bangerth [Sun, 13 Aug 2017 19:17:07 +0000 (13:17 -0600)]
Merge pull request #4815 from jppelteret/move_sacado_header_tests

Moved Sacado product type header and moved Sacado tests

7 years agoMoved Sacado product type header and moved Sacado tests 4815/head
Jean-Paul Pelteret [Sun, 13 Aug 2017 18:07:07 +0000 (12:07 -0600)]
Moved Sacado product type header and moved Sacado tests

7 years agofix parpack unit test 4812/head
Denis Davydov [Sun, 13 Aug 2017 16:57:41 +0000 (18:57 +0200)]
fix parpack unit test

7 years agoAugment news entry 4813/head
Matthias Maier [Sun, 13 Aug 2017 18:39:47 +0000 (13:39 -0500)]
Augment news entry

7 years agofix a test
Matthias Maier [Sun, 13 Aug 2017 17:04:13 +0000 (12:04 -0500)]
fix a test

7 years agoLogStream: Remove log_cerr
Matthias Maier [Sun, 13 Aug 2017 17:03:07 +0000 (12:03 -0500)]
LogStream: Remove log_cerr

7 years agoupdate documentation
Timo Heister [Sun, 13 Aug 2017 18:31:38 +0000 (12:31 -0600)]
update documentation

7 years agocleanup assemble flags, fix logic, add asserts, adjust tests
Timo Heister [Sun, 13 Aug 2017 18:17:43 +0000 (12:17 -0600)]
cleanup assemble flags, fix logic, add asserts, adjust tests

7 years agoRevert "Allow the create_* functions to be called with nullptr coefficients"
Daniel Arndt [Sun, 13 Aug 2017 18:12:46 +0000 (20:12 +0200)]
Revert "Allow the create_* functions to be called with nullptr coefficients"

This reverts commit 7bd1893bd9084308c2fb9e51aef8cfa2641617e7.

7 years agoMerge pull request #4769 from tamiko/clean_up_logstream
Wolfgang Bangerth [Sun, 13 Aug 2017 18:12:06 +0000 (12:12 -0600)]
Merge pull request #4769 from tamiko/clean_up_logstream

LogStream: Remove testing mode and float manipulation

7 years agotests: Update test output 4769/head
Matthias Maier [Sun, 13 Aug 2017 16:40:17 +0000 (11:40 -0500)]
tests: Update test output

7 years agotests: Update affected tests
Matthias Maier [Sun, 13 Aug 2017 16:39:37 +0000 (11:39 -0500)]
tests: Update affected tests

7 years agoadd a news entry
Matthias Maier [Thu, 10 Aug 2017 17:49:01 +0000 (12:49 -0500)]
add a news entry

7 years agoLogStream: Remove testing mode and float manipulation
Matthias Maier [Thu, 10 Aug 2017 17:45:08 +0000 (12:45 -0500)]
LogStream: Remove testing mode and float manipulation

For reproducible tests we nowadays use numdiff to compare for small
numerical differences. Thus, remove the old functionality in LogStream.

7 years agotests: numdiff: add "[](){}^' as separators
Matthias Maier [Fri, 11 Aug 2017 00:13:01 +0000 (19:13 -0500)]
tests: numdiff: add "[](){}^' as separators

7 years agoMerge pull request #4807 from tjhei/p4est_iterate_cleanup_2
Timo Heister [Sun, 13 Aug 2017 17:57:40 +0000 (13:57 -0400)]
Merge pull request #4807 from tjhei/p4est_iterate_cleanup_2

clean up p4est::iterate

7 years agoMerge pull request #4814 from tamiko/improve_readme_md
Timo Heister [Sun, 13 Aug 2017 17:56:52 +0000 (13:56 -0400)]
Merge pull request #4814 from tamiko/improve_readme_md

README.md: Make a lot of relative paths clickable.

7 years agomake links https 4814/head
Timo Heister [Sun, 13 Aug 2017 17:56:11 +0000 (13:56 -0400)]
make links https

7 years agoREADME.md: Make a lot of relative paths clickable.
Matthias Maier [Sun, 13 Aug 2017 17:23:21 +0000 (12:23 -0500)]
README.md: Make a lot of relative paths clickable.

7 years agoMerge pull request #4783 from jppelteret/cmake_adolc_detection
Timo Heister [Sun, 13 Aug 2017 17:39:26 +0000 (13:39 -0400)]
Merge pull request #4783 from jppelteret/cmake_adolc_detection

CMake Adol-C detection

7 years agoAdd stand-alone tests for Adol-C 4783/head
Jean-Paul Pelteret [Fri, 11 Aug 2017 09:16:01 +0000 (03:16 -0600)]
Add stand-alone tests for Adol-C

7 years agoMerge pull request #4806 from bangerth/active-fe-index-4
Timo Heister [Sun, 13 Aug 2017 17:26:02 +0000 (13:26 -0400)]
Merge pull request #4806 from bangerth/active-fe-index-4

Limit setting active_fe_indices to locally owned cells

7 years agoUpdate documentation. 4806/head
Wolfgang Bangerth [Sun, 13 Aug 2017 00:22:23 +0000 (18:22 -0600)]
Update documentation.

7 years agoUpdate config.h to include Adol-C related settings
Jean-Paul Pelteret [Fri, 11 Aug 2017 09:11:10 +0000 (03:11 -0600)]
Update config.h to include Adol-C related settings

7 years agoCMake: Add a check for ADOL-C compatibility
Matthias Maier [Sat, 12 Aug 2017 21:22:07 +0000 (16:22 -0500)]
CMake: Add a check for ADOL-C compatibility

7 years agoAdd CMake detection for Adol-C
Jean-Paul Pelteret [Fri, 11 Aug 2017 09:10:15 +0000 (03:10 -0600)]
Add CMake detection for Adol-C

7 years agoclean up p4est::iterate 4807/head
Timo Heister [Sun, 13 Aug 2017 00:20:22 +0000 (18:20 -0600)]
clean up p4est::iterate

7 years agoMerge pull request #4810 from tamiko/fix_an_assert
Daniel Arndt [Sun, 13 Aug 2017 14:10:53 +0000 (16:10 +0200)]
Merge pull request #4810 from tamiko/fix_an_assert

Fix an assert: It should read "nullptr", not "null_ptr"

7 years agoFix an assert: It should read "nullptr", not "null_ptr" 4810/head
Matthias Maier [Sun, 13 Aug 2017 08:06:34 +0000 (03:06 -0500)]
Fix an assert: It should read "nullptr", not "null_ptr"

7 years agoMerge pull request #4801 from drwells/remove-have-isfinite
Matthias Maier [Sun, 13 Aug 2017 04:39:38 +0000 (23:39 -0500)]
Merge pull request #4801 from drwells/remove-have-isfinite

Remove DEAL_II_HAVE_ISFINITE.

7 years agoMerge pull request #4805 from bangerth/fix
Matthias Maier [Sun, 13 Aug 2017 04:36:06 +0000 (23:36 -0500)]
Merge pull request #4805 from bangerth/fix

Minor test cleanups.

7 years agoMerge pull request #4808 from tjhei/compile_without_mpi
David Wells [Sun, 13 Aug 2017 03:51:19 +0000 (23:51 -0400)]
Merge pull request #4808 from tjhei/compile_without_mpi

make compile without MPI

7 years agomake compile without MPI 4808/head
Timo Heister [Sun, 13 Aug 2017 00:45:26 +0000 (18:45 -0600)]
make compile without MPI

7 years agoLimit setting and getting active_fe_indices to cells where we can do that.
Wolfgang Bangerth [Sat, 22 Jul 2017 00:54:29 +0000 (18:54 -0600)]
Limit setting and getting active_fe_indices to cells where we can do that.

7 years agoDo not set active_fe_indices on non-locally owned cells.
Wolfgang Bangerth [Sat, 12 Aug 2017 23:55:18 +0000 (17:55 -0600)]
Do not set active_fe_indices on non-locally owned cells.

7 years agoDo not set active_fe_indices on non-locally owned cells.
Wolfgang Bangerth [Sat, 12 Aug 2017 23:57:45 +0000 (17:57 -0600)]
Do not set active_fe_indices on non-locally owned cells.

On the other hand, this piece of code tries to do exactly this: after ghost
exchange, we try to set the active_fe_index on a ghost cell to the value
we received from the proper owner of that cell. We work around this by
avoiding cell->set_active_fe_index() on such cells, and manipulate the
underlying data structure directly.

Because these data structures are private, we can no longer do this in a
segregated function in an anonymous namespace, but need to do this in a
function that lives in the 'Implementation' struct.

7 years agoMinor test cleanups. 4805/head
Wolfgang Bangerth [Sun, 13 Aug 2017 00:13:06 +0000 (18:13 -0600)]
Minor test cleanups.


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