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https://gitweb.dealii.org/ - dealii.git/log
Wolfgang Bangerth [Thu, 22 Jun 2023 21:34:00 +0000 (15:34 -0600)]
Add an assertion.
Daniel Arndt [Thu, 22 Jun 2023 20:43:27 +0000 (16:43 -0400)]
Merge pull request #15435 from drwells/cuda-bundled-kokkos-warning
Daniel Arndt [Thu, 22 Jun 2023 20:29:40 +0000 (16:29 -0400)]
Merge pull request #15436 from bangerth/higher-order
David Wells [Thu, 22 Jun 2023 15:04:20 +0000 (11:04 -0400)]
Add a better error message for Cuda + bundled Kokkos.
Wolfgang Bangerth [Thu, 22 Jun 2023 16:07:38 +0000 (10:07 -0600)]
Warn about the use of higher order output when using Visit.
Matthias Maier [Thu, 22 Jun 2023 14:59:43 +0000 (14:59 +0000)]
Merge pull request #15430 from kronbichler/fix_mf_bug
Fix bug in MatrixFree setup for FE_Nothing
Matthias Maier [Thu, 22 Jun 2023 14:59:28 +0000 (14:59 +0000)]
Merge pull request #15431 from kronbichler/fix_bug_constraints
Fix bug in AffineConstraints::make_sorted_row_list
Matthias Maier [Thu, 22 Jun 2023 14:54:40 +0000 (14:54 +0000)]
Merge pull request #15423 from kronbichler/spell_set_up_2
Fix a few more 'set up'
Martin Kronbichler [Thu, 22 Jun 2023 11:53:17 +0000 (13:53 +0200)]
Merge pull request #15428 from tamiko/fix_gcc_13_warnings_1
fe/fe_values: avoid a "maybe uninitialized" warning with gcc-13
Martin Kronbichler [Thu, 22 Jun 2023 11:45:04 +0000 (13:45 +0200)]
Fix bug in AffineConstraints::make_sorted_row_list
Martin Kronbichler [Thu, 22 Jun 2023 09:54:06 +0000 (11:54 +0200)]
Fix bug in MatrixFree setup for FE_Nothing
Matthias Maier [Thu, 22 Jun 2023 06:13:32 +0000 (06:13 +0000)]
Merge pull request #15422 from masterleinad/fix_clang_tidy_9_5
Fix clang-tidy complaints
Matthias Maier [Thu, 22 Jun 2023 05:55:59 +0000 (00:55 -0500)]
fe/fe_values: convert internal::do_function_laplacians to ArrayView
Matthias Maier [Thu, 22 Jun 2023 05:54:10 +0000 (00:54 -0500)]
fe/fe_values: convert internal::do_function_gradients to ArrayView
Matthias Maier [Thu, 22 Jun 2023 05:49:43 +0000 (00:49 -0500)]
fe/fe_values: convert internal::do_function_values to ArrayView
Martin Kronbichler [Wed, 21 Jun 2023 20:26:07 +0000 (22:26 +0200)]
Fix a few more 'set up'
Daniel Arndt [Wed, 21 Jun 2023 20:26:43 +0000 (16:26 -0400)]
Fix clang-tidy complaints
Matthias Maier [Wed, 21 Jun 2023 16:21:58 +0000 (16:21 +0000)]
Merge pull request #15412 from kronbichler/correct_set_up
Spell 'set up' when used as a verb
Matthias Maier [Wed, 21 Jun 2023 16:21:00 +0000 (16:21 +0000)]
Merge pull request #15414 from masterleinad/fix_doxygen_reflinks
Fix doxygen reflinks
Matthias Maier [Wed, 21 Jun 2023 16:20:32 +0000 (16:20 +0000)]
Merge pull request #15397 from tamiko/fix_opencascade_tests
Testsuite: opencascade/stl_(refinement|write): do not compare output
Matthias Maier [Wed, 21 Jun 2023 16:19:15 +0000 (16:19 +0000)]
Merge pull request #15411 from tamiko/fix_a_test_4
Testsuite: symengine/symengine_tensor_operations_04: fix test compilation
Wolfgang Bangerth [Wed, 21 Jun 2023 15:32:19 +0000 (09:32 -0600)]
Merge pull request #15413 from kronbichler/rearrange_make_file
Move source/matrix_free up in build order
Daniel Arndt [Wed, 21 Jun 2023 14:34:06 +0000 (10:34 -0400)]
Fix doxygen reflinks
Martin Kronbichler [Wed, 21 Jun 2023 13:04:19 +0000 (15:04 +0200)]
Merge pull request #15390 from bangerth/icc
Try to work around an Intel compiler issue.
Martin Kronbichler [Wed, 21 Jun 2023 13:04:01 +0000 (15:04 +0200)]
Merge pull request #15399 from tamiko/fix_rpe_tests
Testsuite: do not compare output for some rpe/* tests
Martin Kronbichler [Wed, 21 Jun 2023 13:03:37 +0000 (15:03 +0200)]
Merge pull request #15409 from bangerth/typo
Fix a typo in the name of a function in the documentation.
Martin Kronbichler [Wed, 21 Jun 2023 13:03:18 +0000 (15:03 +0200)]
Merge pull request #15396 from tamiko/fix_a_test
Testsuite: numerics/nonlinear_solver_selector_03_petsc: add output variant
Martin Kronbichler [Wed, 21 Jun 2023 13:02:26 +0000 (15:02 +0200)]
Merge pull request #15404 from tamiko/fix_a_test_2
Testsuite: sharedtria/communicate_active_fe_indices_01b: do not compare test output
Martin Kronbichler [Wed, 21 Jun 2023 13:02:05 +0000 (15:02 +0200)]
Merge pull request #15407 from bangerth/version
Correct a version number.
Daniel Arndt [Wed, 21 Jun 2023 11:16:27 +0000 (07:16 -0400)]
Merge pull request #15394 from tamiko/fix_metis_tests_2
Testsuite: mpi/hp_cell_weights_* do not compare output for metis variants
Daniel Arndt [Wed, 21 Jun 2023 11:13:39 +0000 (07:13 -0400)]
Merge pull request #15408 from bangerth/77-1
Minor adjustment to step-77.
Daniel Arndt [Wed, 21 Jun 2023 11:13:09 +0000 (07:13 -0400)]
Merge pull request #15405 from masterleinad/fix_more_tests_9_5
Fix some more tests without hypre and with C++20
Martin Kronbichler [Wed, 21 Jun 2023 07:24:52 +0000 (09:24 +0200)]
Merge pull request #15403 from tamiko/fix_scalapack_tests
Testsuite: scalapack/scalapack_05: add output variant
Martin Kronbichler [Wed, 21 Jun 2023 06:18:21 +0000 (08:18 +0200)]
Move source/matrix_free up in build order
Martin Kronbichler [Wed, 21 Jun 2023 06:06:29 +0000 (08:06 +0200)]
Spell 'set up' when used as a verb
Martin Kronbichler [Wed, 21 Jun 2023 05:44:20 +0000 (07:44 +0200)]
Merge pull request #15392 from taojinllnl/add_entry_news_changes_minor
add an entry in doc/news/changes/minor for PR #15377
Matthias Maier [Wed, 21 Jun 2023 02:17:43 +0000 (21:17 -0500)]
Test symengine/symengine_tensor_operations_04: fix test compilation
This partially reverts
7ad068984b29f5712dd2bed5742459a9e2030ac3
This part has been commited and merged accidentally (partly due to our
CI not testing any symengine artifacts).
Unfortunately, the anticipated replacement of `begin_raw()` by
`unrolled_to_component_indices(i)` does not work as intended. It is
neither implemented for Tensor of rank 0, nor for SymmetricTensor of
rank 4.
Marc Fehling [Wed, 21 Jun 2023 01:17:12 +0000 (19:17 -0600)]
Merge pull request #15393 from bangerth/doxygen
Fix poor doxygen indentation choices.
Wolfgang Bangerth [Wed, 21 Jun 2023 00:44:54 +0000 (18:44 -0600)]
Fix a typo in the name of a function in the documentation.
Wolfgang Bangerth [Wed, 21 Jun 2023 00:27:34 +0000 (18:27 -0600)]
Minor adjustment to step-77.
Marc Fehling [Tue, 20 Jun 2023 23:30:38 +0000 (18:30 -0500)]
Work around an Intel18 compiler issue.
Matthias Maier [Tue, 20 Jun 2023 23:22:59 +0000 (23:22 +0000)]
Merge pull request #15389 from tamiko/fix_metis_tests
Testsuite: metis/metis_*: only run tests, do not compare output
Matthias Maier [Tue, 20 Jun 2023 23:22:08 +0000 (23:22 +0000)]
Merge pull request #15391 from masterleinad/fix_arborx_tests_trilinos14_kokkos4
Fix ArborX tests for Trilinos 14/Kokkos 4
Wolfgang Bangerth [Tue, 20 Jun 2023 22:43:19 +0000 (16:43 -0600)]
Correct a version number.
Daniel Arndt [Tue, 20 Jun 2023 22:25:55 +0000 (18:25 -0400)]
Fix ambiguity for TrilinosWrappers::Iterators comparison operators using C++20
Daniel Arndt [Tue, 20 Jun 2023 22:23:39 +0000 (18:23 -0400)]
Restrict some tests requiring hypre
Matthias Maier [Tue, 20 Jun 2023 22:00:47 +0000 (17:00 -0500)]
Test sharedtria/communicate_active_fe_indices_01b: do not compare test output
The parallel distribution is computed with metis, which is not stable.
Simply skip comparing the test output which listed the number of local
degrees of freedom of a distributed, shared triangulation.
Matthias Maier [Tue, 20 Jun 2023 21:50:39 +0000 (16:50 -0500)]
Test scalapack/scalapack_05: add output variant
It is a bit disconcerting that the computed recirpocal condition number
of the matrix changes. But given the fact that the manual computation
(first number) and the scalapack-internal function return vastly
differing numbers already tell me that the test setup simply isn't
robust.
Let us add an output variant for the scalapack_05 test. I get almost the
same number on three different configuration so I am hopeful that we can
get away with an output variant for the time being.
Marc Fehling [Tue, 20 Jun 2023 21:09:20 +0000 (15:09 -0600)]
Merge pull request #15386 from drwells/codespell-9.5
Release preparation: Run codespell.
Matthias Maier [Tue, 20 Jun 2023 21:06:18 +0000 (16:06 -0500)]
Test rpe/distributed_compute_intersection_locations_{02,04} do not compare output
Let us also modify the following two tests with all their mpirun
variants. I again see slight differences between gcc and clang versions,
and between libc++ and libstdc++.
Matthias Maier [Tue, 20 Jun 2023 20:57:34 +0000 (15:57 -0500)]
Test rpe/convert_intersections_to_rpe_data_02: do not compare output
This test outputs a mesh with differing results between standard
libraries (gnu libstdc++ versus clang/llvm libc++).
Instead of adding another output variant for libc++, let us simply
disable the final comparison and run the test only relying on cgal and
our library to throw an error.
Matthias Maier [Tue, 20 Jun 2023 20:51:27 +0000 (15:51 -0500)]
Test rpe/convert_intersections_to_rpe_data_02: do not compare output
This test outputs a mesh with differing results between cgal library
versions and underlying standard library. I see at least three different
results on the regression tester.
Instead of adding three different variants per mpirun, let us simply
disable the final comparison and run the test only relying on cgal and
our library to throw an error.
Matthias Maier [Tue, 20 Jun 2023 19:45:45 +0000 (14:45 -0500)]
Test opencascade/stl_write: do not compare output
The output of this test is a mesh where depending on the opencascade
version in question, toolchain and hardware a slightly different
interpolation is found. Let us not compare the final mesh and simply
rely on the routine to throw an error if it cannot create and write the
mesh.
Matthias Maier [Tue, 20 Jun 2023 19:42:52 +0000 (14:42 -0500)]
Test opencascade/stl_refinement: do not compare output
The output of this test is a mesh where depending on the opencascade
version in question, toolchain and hardware a slightly different
interpolation is found. Let us not compare the final mesh and simply
rely on the routine to throw an error if it cannot create and refine the
mesh.
Matthias Maier [Tue, 20 Jun 2023 19:32:53 +0000 (14:32 -0500)]
Test: numerics/nonlinear_solver_selector_03_petsc: add output variant
I see a stable, but different, output for this test on three different
machines. Let us thus add an output variant for now.
Note that a proper fix would be to not print initial and final residuals
in these tests. Even though the numbers seem to be pretty stable.
Matthias Maier [Tue, 20 Jun 2023 19:08:06 +0000 (14:08 -0500)]
Test mpi/hp_cell_weights_04: signal failure with a nonzero exit status
As we no longer compare output files for this (metis based) test we have
to signal an error condition (in this case we expect an exception to be
thrown!) with a nonzero exit status.
Matthias Maier [Tue, 20 Jun 2023 19:07:49 +0000 (14:07 -0500)]
Test mpi/hp_cell_weights_04: do not compare output
Matthias Maier [Tue, 20 Jun 2023 19:06:07 +0000 (14:06 -0500)]
Test mpi/hp_cell_weights_03: signal failure with a nonzero exit status
As we no longer compare output files for this (metis based) test we have
to signal an error condition (in this case we expect an exception to be
thrown!) with a nonzero exit status.
Matthias Maier [Tue, 20 Jun 2023 19:05:48 +0000 (14:05 -0500)]
Test mpi/hp_cell_weights_03: do not compare output
Wolfgang Bangerth [Tue, 20 Jun 2023 18:39:45 +0000 (12:39 -0600)]
Fix poor doxygen indentation choices.
Daniel Arndt [Tue, 20 Jun 2023 18:21:15 +0000 (14:21 -0400)]
Merge pull request #15387 from masterleinad/restrict_gridtools_cache_tests
Tao Jin [Tue, 20 Jun 2023 18:10:48 +0000 (14:10 -0400)]
add an entry in doc/news/changes/minor for PR #15377
Daniel Arndt [Tue, 20 Jun 2023 17:52:12 +0000 (13:52 -0400)]
Fix ArborX tests for Trilinos 14/Kokkos 4
Martin Kronbichler [Tue, 20 Jun 2023 18:09:17 +0000 (20:09 +0200)]
Merge pull request #15388 from tamiko/fix_gmsh_tests
Testsuite: fix gmsh tests
Wolfgang Bangerth [Tue, 20 Jun 2023 18:02:47 +0000 (12:02 -0600)]
Try to work around an Intel compiler issue.
David Wells [Tue, 20 Jun 2023 14:10:04 +0000 (10:10 -0400)]
Fix typos caught by the typos program.
Matthias Maier [Tue, 20 Jun 2023 16:22:14 +0000 (11:22 -0500)]
Test metis/metis_*: only run tests, do not compare output
We currently carry 5 output variants per test and I would have to add
another 2 output variants for all tests to pass on the regression
tester.
I think it is time that we acknowledge that metis output is not stable.
Instead let us simply check that the tests compile and run successfully
without throwing an error.
Wolfgang Bangerth [Tue, 20 Jun 2023 16:19:11 +0000 (10:19 -0600)]
Merge pull request #15377 from taojinllnl/remove_error_output_lapack_full_matrix
Remove error output in lapack_full_matrix.cc
Matthias Maier [Tue, 20 Jun 2023 15:40:11 +0000 (10:40 -0500)]
gmsh/gmsh_api_05: add test variant
Matthias Maier [Tue, 20 Jun 2023 15:39:50 +0000 (10:39 -0500)]
Test gmsh/gmsh_api_04: add test output variant
Matthias Maier [Tue, 20 Jun 2023 15:31:55 +0000 (10:31 -0500)]
Test gmsh/gmsh_api*: add MPI_InitFinalize which is necessary if gmsh was built with MPI support
Daniel Arndt [Tue, 20 Jun 2023 15:28:32 +0000 (11:28 -0400)]
Instantiate MGTwoLevelTransferBase explicitly
David Wells [Tue, 20 Jun 2023 14:06:54 +0000 (10:06 -0400)]
Fix a CMake typo.
We now print the correct copyright year.
David Wells [Tue, 20 Jun 2023 13:38:31 +0000 (09:38 -0400)]
9.5: run the double-word typos script.
David Wells [Tue, 20 Jun 2023 13:38:17 +0000 (09:38 -0400)]
9.5: run codespell.
Martin Kronbichler [Tue, 20 Jun 2023 06:58:24 +0000 (08:58 +0200)]
Merge pull request #15385 from tamiko/update_gitattributes
Release preparation: update gitattributes
Matthias Maier [Tue, 20 Jun 2023 04:28:20 +0000 (04:28 +0000)]
Merge pull request #15380 from kronbichler/fix_fe_eval_factory_degree_max
Make FE_EVAL_FACTORY_DEGREE_MAX more robust
Marc Fehling [Tue, 20 Jun 2023 04:20:49 +0000 (22:20 -0600)]
Merge pull request #15384 from tamiko/update_copyright_years
Release preparation: update copyright years
Matthias Maier [Tue, 20 Jun 2023 04:09:47 +0000 (23:09 -0500)]
gitattributes: export cmake configuration file needed for quick tests
Matthias Maier [Tue, 20 Jun 2023 03:23:14 +0000 (22:23 -0500)]
update copyright years: tests
Matthias Maier [Tue, 20 Jun 2023 03:18:27 +0000 (22:18 -0500)]
update copyright years: cmake, contrib, doc, examples
Matthias Maier [Tue, 20 Jun 2023 03:16:46 +0000 (22:16 -0500)]
update copyright years: include, source
Martin Kronbichler [Mon, 19 Jun 2023 17:42:18 +0000 (19:42 +0200)]
Recommend the use of LD_PRELOAD
Martin Kronbichler [Mon, 19 Jun 2023 16:58:34 +0000 (18:58 +0200)]
Make FE_EVAL_FACTORY_DEGREE_MAX more robust
David Wells [Mon, 19 Jun 2023 16:38:53 +0000 (12:38 -0400)]
Merge pull request #15379 from masterleinad/restrict_gridtools_cache_tests
Restrict GridTools::Cache tests using Zoltan
Martin Kronbichler [Mon, 19 Jun 2023 15:55:36 +0000 (17:55 +0200)]
Merge pull request #14978 from peterrum/fgmres_gs
Move OrthogonalizationStrategy into new file
Daniel Arndt [Mon, 19 Jun 2023 15:03:18 +0000 (11:03 -0400)]
Merge pull request #15378 from emmanuel-ferdman/wip
Daniel Arndt [Mon, 19 Jun 2023 13:35:05 +0000 (09:35 -0400)]
Restrict GridTools::Cache tests using Zoltan
Martin Kronbichler [Mon, 19 Jun 2023 10:54:14 +0000 (12:54 +0200)]
Merge pull request #15376 from tamiko/mark_performance_tests_stable
Performance tests: small cleanup and documentation update
Emmanuel Ferdman [Sun, 18 Jun 2023 09:20:56 +0000 (12:20 +0300)]
fix: update ninja build resource
Martin Kronbichler [Mon, 19 Jun 2023 05:17:38 +0000 (07:17 +0200)]
Merge pull request #15297 from marcfehling/blockvector-reinit-ghosted
Choose to initialize BlockVector with ghost elements using reinit(partitioners).
Tao Jin [Sun, 18 Jun 2023 00:58:17 +0000 (20:58 -0400)]
Remove error output in lapack_full_matrix.cc
Based on the error values provided by LAPACK, provide detailed error messages via the AssertThrow mechanism.
David Wells [Sat, 17 Jun 2023 19:13:44 +0000 (15:13 -0400)]
Merge pull request #15372 from bangerth/wait
Wait for communication to finish.
David Wells [Sat, 17 Jun 2023 19:11:19 +0000 (15:11 -0400)]
Merge pull request #15286 from Rombur/cuda_deprecated
Deprecate our own CUDA backend
Wolfgang Bangerth [Sat, 17 Jun 2023 02:28:53 +0000 (20:28 -0600)]
Merge pull request #15369 from jh66637/improve_name
improve name and documentation
Wolfgang Bangerth [Sat, 17 Jun 2023 02:28:43 +0000 (20:28 -0600)]
Merge pull request #15373 from masterleinad/fix_doxygen_requires_petsc_timestepper
Fix doxygen for PETScWrappers::TimeStepper using DEAL_II_CXX20_REQUIRES
Matthias Maier [Sat, 17 Jun 2023 00:07:13 +0000 (19:07 -0500)]
performance_tests/instrumentation_step_3: unify tests
Matthias Maier [Fri, 16 Jun 2023 23:57:30 +0000 (18:57 -0500)]
tests/performance_tests: mark tests used in production as stable
Martin Kronbichler [Fri, 16 Jun 2023 20:38:26 +0000 (22:38 +0200)]
Merge pull request #14955 from peterrum/CellwiseInverseMassMatrixImplBasic_run
Remove specialization of CellwiseInverseMassMatrixImplBasic::run()
Wolfgang Bangerth [Fri, 16 Jun 2023 20:20:21 +0000 (14:20 -0600)]
Merge pull request #15327 from marcfehling/isnan-3
github-actions: Do not treat `tautological-constant-compare` as error.
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