]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
4 years agoMerge pull request #9813 from bangerth/cleanups-2
Daniel Arndt [Sat, 4 Apr 2020 13:26:50 +0000 (09:26 -0400)]
Merge pull request #9813 from bangerth/cleanups-2

Simplify some code by using a range-based for loop.

4 years agoMerge pull request #9636 from tamiko/reintroduce_aio
Daniel Arndt [Sat, 4 Apr 2020 13:23:21 +0000 (09:23 -0400)]
Merge pull request #9636 from tamiko/reintroduce_aio

Step-69: Introduce asynchronous IO mechanism

4 years agoMerge pull request #9814 from bangerth/assertion
Daniel Arndt [Sat, 4 Apr 2020 13:06:25 +0000 (09:06 -0400)]
Merge pull request #9814 from bangerth/assertion

Add a missing assertion.

4 years agoMerge pull request #9806 from bangerth/69-2
Martin Kronbichler [Sat, 4 Apr 2020 06:55:00 +0000 (08:55 +0200)]
Merge pull request #9806 from bangerth/69-2

Use AE spelling 'disk' instead of BE spelling 'disc'.

4 years agoMerge pull request #9810 from peterrum/dofhandler_blockinfo
Martin Kronbichler [Sat, 4 Apr 2020 06:25:48 +0000 (08:25 +0200)]
Merge pull request #9810 from peterrum/dofhandler_blockinfo

Add functions accepting hp::DoFHandler to BlockInfo

4 years agofix documentation 9636/head
Matthias Maier [Fri, 3 Apr 2020 03:54:23 +0000 (22:54 -0500)]
fix documentation

4 years agorefactor to use shared pointer
Matthias Maier [Fri, 3 Apr 2020 03:35:45 +0000 (22:35 -0500)]
refactor to use shared pointer

4 years agoRefactor output thread; only perform IO asynchronously
Matthias Maier [Thu, 2 Apr 2020 22:14:30 +0000 (17:14 -0500)]
Refactor output thread; only perform IO asynchronously

4 years agoadd an configuration option
Matthias Maier [Thu, 2 Apr 2020 21:21:10 +0000 (16:21 -0500)]
add an configuration option

4 years agoRevert "remove asynchronous IO mechanism"
Matthias Maier [Sat, 7 Mar 2020 20:19:59 +0000 (14:19 -0600)]
Revert "remove asynchronous IO mechanism"

This reverts commit 7980483d1654923c44f67491699b82e6b5ce4e51.

4 years agoMerge pull request #9796 from kronbichler/improve_quarter_hyper_ball
Daniel Arndt [Sat, 4 Apr 2020 04:24:02 +0000 (00:24 -0400)]
Merge pull request #9796 from kronbichler/improve_quarter_hyper_ball

Improve mesh quality of quarter hyper ball

4 years agoUse AE spelling 'disk' instead of BE spelling 'disc'. 9806/head
Wolfgang Bangerth [Fri, 3 Apr 2020 02:16:33 +0000 (20:16 -0600)]
Use AE spelling 'disk' instead of BE spelling 'disc'.

4 years agoMerge pull request #9801 from masterleinad/remove_pointer_matrix
Daniel Arndt [Sat, 4 Apr 2020 04:04:34 +0000 (00:04 -0400)]
Merge pull request #9801 from masterleinad/remove_pointer_matrix

Remove PointerMatrix*

4 years agoAdd a missing assertion. 9814/head
Wolfgang Bangerth [Sat, 4 Apr 2020 04:02:43 +0000 (22:02 -0600)]
Add a missing assertion.

4 years agoSimplify some code by using a range-based for loop. 9813/head
Wolfgang Bangerth [Fri, 3 Apr 2020 23:28:38 +0000 (17:28 -0600)]
Simplify some code by using a range-based for loop.

4 years agoAdd functions accepting hp::DoFHandler to BlockInfo 9810/head
Peter Munch [Fri, 3 Apr 2020 21:35:19 +0000 (23:35 +0200)]
Add functions accepting hp::DoFHandler to BlockInfo

4 years agoMerge pull request #9758 from peterrum/parallel_namespace_problem
Daniel Arndt [Fri, 3 Apr 2020 21:03:45 +0000 (17:03 -0400)]
Merge pull request #9758 from peterrum/parallel_namespace_problem

Explicitly spell dealii::parallel in multiple places

4 years agoRemove PointerMatrix* 9801/head
Daniel Arndt [Wed, 1 Apr 2020 18:54:51 +0000 (14:54 -0400)]
Remove PointerMatrix*

4 years agoChangelog 9796/head
Martin Kronbichler [Thu, 2 Apr 2020 16:42:19 +0000 (18:42 +0200)]
Changelog

4 years agoAdd pictures of new mesh
Martin Kronbichler [Thu, 2 Apr 2020 16:42:08 +0000 (18:42 +0200)]
Add pictures of new mesh

4 years agoImprove mesh quality of quarter hyper ball
Martin Kronbichler [Thu, 2 Apr 2020 12:20:44 +0000 (14:20 +0200)]
Improve mesh quality of quarter hyper ball

4 years agoMerge pull request #9787 from luca-heltai/base64-encode-decode
Daniel Arndt [Fri, 3 Apr 2020 19:00:36 +0000 (15:00 -0400)]
Merge pull request #9787 from luca-heltai/base64-encode-decode

Encode and decode Base64 format.

4 years agoMerge pull request #9800 from masterleinad/minimize_boost_geometry
Daniel Arndt [Fri, 3 Apr 2020 16:58:03 +0000 (12:58 -0400)]
Merge pull request #9800 from masterleinad/minimize_boost_geometry

Minimize boost/geometry.h includes

4 years agoExplicitly spell dealii::parallel in multiple places 9758/head
Peter Munch [Sat, 28 Mar 2020 12:52:57 +0000 (13:52 +0100)]
Explicitly spell dealii::parallel in multiple places

4 years agoRemoved old Base64 code from data_out_base.cc 9787/head
Luca Heltai [Fri, 3 Apr 2020 14:52:48 +0000 (16:52 +0200)]
Removed old Base64 code from data_out_base.cc

4 years agoEncode and decode Base64 format.
Luca Heltai [Wed, 1 Apr 2020 09:14:21 +0000 (11:14 +0200)]
Encode and decode Base64 format.

4 years agoMinimize boost/geometry.h includes 9800/head
Daniel Arndt [Thu, 2 Apr 2020 17:55:33 +0000 (13:55 -0400)]
Minimize boost/geometry.h includes

4 years agoMerge pull request #9786 from masterleinad/remove_filteredmatrix
Martin Kronbichler [Thu, 2 Apr 2020 17:23:00 +0000 (19:23 +0200)]
Merge pull request #9786 from masterleinad/remove_filteredmatrix

Remove deprecated class FilteredMatrix

4 years agoMerge pull request #9791 from peterrum/DoFAccessor_use_hp_cache
Wolfgang Bangerth [Thu, 2 Apr 2020 15:36:01 +0000 (17:36 +0200)]
Merge pull request #9791 from peterrum/DoFAccessor_use_hp_cache

Simplify DoFCellAccessor::distribute_local_to_global()

4 years agoSimplify DoFCellAccessor::distribute_local_to_global() 9791/head
Peter Munch [Wed, 1 Apr 2020 23:16:31 +0000 (01:16 +0200)]
Simplify DoFCellAccessor::distribute_local_to_global()

4 years agoMerge pull request #9789 from tjhei/point_no_boost_all
Daniel Arndt [Thu, 2 Apr 2020 00:09:03 +0000 (20:09 -0400)]
Merge pull request #9789 from tjhei/point_no_boost_all

remove boost/geometry.hpp from Point

4 years agoMerge pull request #9783 from peterrum/ph_pattern_segfault
Daniel Arndt [Wed, 1 Apr 2020 22:05:54 +0000 (18:05 -0400)]
Merge pull request #9783 from peterrum/ph_pattern_segfault

Pass ExcNoMatch the description directly

4 years agoremove boost/geometry.hpp from Point 9789/head
Timo Heister [Wed, 1 Apr 2020 19:56:39 +0000 (15:56 -0400)]
remove boost/geometry.hpp from Point

We are including point.h in large parts of deal.II and the
boost/geometry/ header is a shortcut to include all of boost geometry.
Instead, only selectively include the parts we actually need. This
should speed up compilation of deal.II.

4 years agoMerge pull request #9785 from masterleinad/remove_swappable_vector
Daniel Arndt [Wed, 1 Apr 2020 16:43:31 +0000 (12:43 -0400)]
Merge pull request #9785 from masterleinad/remove_swappable_vector

Remove SwappableVector

4 years agoRemove SwappableVector 9785/head
Daniel Arndt [Tue, 31 Mar 2020 23:38:45 +0000 (19:38 -0400)]
Remove SwappableVector

4 years agoRemove deprecated class FilteredMatrix 9786/head
Daniel Arndt [Tue, 31 Mar 2020 00:20:57 +0000 (20:20 -0400)]
Remove deprecated class FilteredMatrix

4 years agoMerge pull request #9767 from kronbichler/mapping_info_output_variants
Daniel Arndt [Wed, 1 Apr 2020 12:39:38 +0000 (08:39 -0400)]
Merge pull request #9767 from kronbichler/mapping_info_output_variants

Add output variants for new MF::MappingInfo test

4 years agoMerge pull request #9784 from masterleinad/constructor_eigenvalueinformation
Martin Kronbichler [Wed, 1 Apr 2020 04:59:45 +0000 (06:59 +0200)]
Merge pull request #9784 from masterleinad/constructor_eigenvalueinformation

Implement default initializer for EigenvalueInformation

4 years agoPass ExcNoMatch the description directly 9783/head
Peter Munch [Tue, 31 Mar 2020 17:31:29 +0000 (19:31 +0200)]
Pass ExcNoMatch the description directly

4 years agoImplement default initializer for EigenvalueInformation 9784/head
Daniel Arndt [Tue, 31 Mar 2020 17:49:26 +0000 (13:49 -0400)]
Implement default initializer for EigenvalueInformation

4 years agoMerge pull request #9490 from simonsticko/add_hyper_cube
David Wells [Tue, 31 Mar 2020 12:42:20 +0000 (08:42 -0400)]
Merge pull request #9490 from simonsticko/add_hyper_cube

Add header quadrature_generator.h

4 years agoAdd header quadrature_generator.h 9490/head
Simon Sticko [Thu, 6 Feb 2020 16:26:04 +0000 (17:26 +0100)]
Add header quadrature_generator.h

Add a header to be used for implementing a QuadratureGenerator class, which
should generate immersed quadrature rules for the different regions of a cell
intersected by the zero contour of a level set function. Add a hypercube class
in a internal namespace QuadratureGeneratorImplementation, which is needed to
implement the underlying algorithm.

4 years agoMerge pull request #9781 from kronbichler/bug_mg_ghost_layer_periodic
David Wells [Mon, 30 Mar 2020 22:55:28 +0000 (18:55 -0400)]
Merge pull request #9781 from kronbichler/bug_mg_ghost_layer_periodic

Fix a bug in mg ghost layer with periodicity and n_levels=1

4 years agoMerge pull request #9780 from bangerth/26
Daniel Arndt [Mon, 30 Mar 2020 22:10:40 +0000 (18:10 -0400)]
Merge pull request #9780 from bangerth/26

Output time and time step in step-26.

4 years agoMerge pull request #9779 from masterleinad/remove_mg_set_debug
Martin Kronbichler [Mon, 30 Mar 2020 19:11:51 +0000 (21:11 +0200)]
Merge pull request #9779 from masterleinad/remove_mg_set_debug

Remove Multigrid::set_debug()

4 years agoMerge pull request #9668 from agrayver/remove_doc_copypaste
Martin Kronbichler [Mon, 30 Mar 2020 18:24:33 +0000 (20:24 +0200)]
Merge pull request #9668 from agrayver/remove_doc_copypaste

Use copydoc for Python wrappers

4 years agoChangelog 9781/head
Martin Kronbichler [Mon, 30 Mar 2020 17:15:44 +0000 (19:15 +0200)]
Changelog

4 years agoTest case
Martin Kronbichler [Mon, 30 Mar 2020 17:13:23 +0000 (19:13 +0200)]
Test case

4 years agoMake sure periodicity is set before constructing hierarchy
Martin Kronbichler [Mon, 30 Mar 2020 17:13:08 +0000 (19:13 +0200)]
Make sure periodicity is set before constructing hierarchy

4 years agoUpdate a changelog entry. 9780/head
Wolfgang Bangerth [Mon, 30 Mar 2020 17:02:00 +0000 (11:02 -0600)]
Update a changelog entry.

4 years agoOutput time and time step in step-26.
Wolfgang Bangerth [Mon, 30 Mar 2020 17:00:42 +0000 (11:00 -0600)]
Output time and time step in step-26.

4 years agoChange log entry 9779/head
Daniel Arndt [Mon, 30 Mar 2020 16:33:42 +0000 (12:33 -0400)]
Change log entry

4 years agoUpdate tests
Daniel Arndt [Mon, 30 Mar 2020 16:29:40 +0000 (12:29 -0400)]
Update tests

4 years agoUse signals in Multigrid::level_step()
Daniel Arndt [Mon, 30 Mar 2020 16:28:49 +0000 (12:28 -0400)]
Use signals in Multigrid::level_step()

4 years agoMerge pull request #9773 from peterrum/paths_fix_order
Wolfgang Bangerth [Mon, 30 Mar 2020 15:06:49 +0000 (17:06 +0200)]
Merge pull request #9773 from peterrum/paths_fix_order

Fix order of module graphs

4 years agoMerge pull request #9775 from kronbichler/fix_utilities_pow
Daniel Arndt [Mon, 30 Mar 2020 13:40:06 +0000 (09:40 -0400)]
Merge pull request #9775 from kronbichler/fix_utilities_pow

Avoid unnecessary integer overflow in Utilities::pow()

4 years agoMerge pull request #9772 from bangerth/graph
Timo Heister [Mon, 30 Mar 2020 13:35:40 +0000 (09:35 -0400)]
Merge pull request #9772 from bangerth/graph

Further try and disentangle the tutorial graph a bit.

4 years agoMerge pull request #9776 from kronbichler/typo_mapping_info
Daniel Arndt [Mon, 30 Mar 2020 13:09:07 +0000 (09:09 -0400)]
Merge pull request #9776 from kronbichler/typo_mapping_info

MappingInfo: Use correct update flags for face quadrature fields

4 years agoMappingInfo: Use correct update flags for face quadrature fields 9776/head
Martin Kronbichler [Mon, 30 Mar 2020 06:30:35 +0000 (08:30 +0200)]
MappingInfo: Use correct update flags for face quadrature fields

4 years agoTwo test cases 9775/head
Martin Kronbichler [Mon, 30 Mar 2020 06:21:46 +0000 (08:21 +0200)]
Two test cases

4 years agoAvoid unnecessary integer overflow of Utilities::pow()
Martin Kronbichler [Mon, 30 Mar 2020 06:21:26 +0000 (08:21 +0200)]
Avoid unnecessary integer overflow of Utilities::pow()

4 years agoFix order of module graphs 9773/head
Peter Munch [Sun, 29 Mar 2020 21:55:16 +0000 (23:55 +0200)]
Fix order of module graphs

4 years agoMerge pull request #9769 from kronbichler/fix_mapping_fe_field_similarity
Martin Kronbichler [Mon, 30 Mar 2020 05:15:36 +0000 (07:15 +0200)]
Merge pull request #9769 from kronbichler/fix_mapping_fe_field_similarity

Fix mapping fe field similarity

4 years agoMerge pull request #9770 from bangerth/67
Martin Kronbichler [Mon, 30 Mar 2020 04:51:23 +0000 (06:51 +0200)]
Merge pull request #9770 from bangerth/67

Also make step-67 depend on step-40.

4 years agoTest case for MappingManifold 9769/head
Martin Kronbichler [Sun, 29 Mar 2020 18:08:12 +0000 (20:08 +0200)]
Test case for MappingManifold

4 years agochangelog
Martin Kronbichler [Sun, 29 Mar 2020 13:58:46 +0000 (15:58 +0200)]
changelog

4 years agoTestcase
Martin Kronbichler [Sun, 29 Mar 2020 13:58:39 +0000 (15:58 +0200)]
Testcase

4 years agoRemove cell similarity for MappingFEField as we cannot know that
Martin Kronbichler [Sun, 29 Mar 2020 13:58:20 +0000 (15:58 +0200)]
Remove cell similarity for MappingFEField as we cannot know that

4 years agoMerge pull request #9000 from bangerth/nedelec
Martin Kronbichler [Sun, 29 Mar 2020 17:39:57 +0000 (19:39 +0200)]
Merge pull request #9000 from bangerth/nedelec

Fix a bug with a combination Q2 x Nedelec element.

4 years agoMerge pull request #9771 from bangerth/doc
Martin Kronbichler [Sun, 29 Mar 2020 17:25:07 +0000 (19:25 +0200)]
Merge pull request #9771 from bangerth/doc

Fix broken documentation.

4 years agoFurther try and disentangle the tutorial graph a bit. 9772/head
Wolfgang Bangerth [Sun, 29 Mar 2020 17:15:04 +0000 (11:15 -0600)]
Further try and disentangle the tutorial graph a bit.

4 years agoFix broken documentation. 9771/head
Wolfgang Bangerth [Sun, 29 Mar 2020 16:48:15 +0000 (10:48 -0600)]
Fix broken documentation.

This was apparently mangled when we ran clang-indent the first time.

4 years agoAlso make step-67 depend on step-40. 9770/head
Wolfgang Bangerth [Sun, 29 Mar 2020 16:45:42 +0000 (10:45 -0600)]
Also make step-67 depend on step-40.

Its parallel node step-69 does, and it only seems reasonable to retain that symmetry.

4 years agoMerge pull request #9765 from rezarastak/table_handler_doc
Wolfgang Bangerth [Sun, 29 Mar 2020 16:09:54 +0000 (18:09 +0200)]
Merge pull request #9765 from rezarastak/table_handler_doc

Minor documentation changes for TableHandler

4 years agoMerge pull request #9764 from peterrum/pow_t
Wolfgang Bangerth [Sun, 29 Mar 2020 16:07:40 +0000 (18:07 +0200)]
Merge pull request #9764 from peterrum/pow_t

Template Utilities::pow()

4 years agoAnd again the fix for the project_bv_curl_conf_04 test 9000/head
Winnifried Wollner [Mon, 9 Mar 2020 13:18:33 +0000 (14:18 +0100)]
And again the fix for the project_bv_curl_conf_04 test

4 years agoRemove Multigrid::set_debug
Daniel Arndt [Sun, 29 Mar 2020 13:37:39 +0000 (09:37 -0400)]
Remove Multigrid::set_debug

4 years agoMerge pull request #9766 from kronbichler/fix_tutorial_graph
Daniel Arndt [Sun, 29 Mar 2020 13:25:31 +0000 (09:25 -0400)]
Merge pull request #9766 from kronbichler/fix_tutorial_graph

Follow-up to step-67: fix tutorial graph

4 years agoAdd output variants for new MF::MappingInfo test 9767/head
Martin Kronbichler [Sun, 29 Mar 2020 11:29:04 +0000 (13:29 +0200)]
Add output variants for new MF::MappingInfo test

4 years agoFollow-up to step-67: fix tutorial graph 9766/head
Martin Kronbichler [Sun, 29 Mar 2020 11:17:32 +0000 (13:17 +0200)]
Follow-up to step-67: fix tutorial graph

4 years agoMinor documentation changes for TableHandler 9765/head
Reza Rastak [Sun, 29 Mar 2020 05:13:50 +0000 (22:13 -0700)]
Minor documentation changes for TableHandler

4 years agoMerge pull request #9763 from kronbichler/avoid_n_array_elements
Daniel Arndt [Sun, 29 Mar 2020 01:30:57 +0000 (21:30 -0400)]
Merge pull request #9763 from kronbichler/avoid_n_array_elements

Avoid deprecated VectorizedArray::n_array_elements

4 years agoTemplate Utilities::pow() 9764/head
Peter Munch [Sat, 28 Mar 2020 22:05:21 +0000 (23:05 +0100)]
Template Utilities::pow()

4 years agoAvoid deprecated VectorizedArray::n_array_elements 9763/head
Martin Kronbichler [Sat, 28 Mar 2020 21:56:53 +0000 (22:56 +0100)]
Avoid deprecated VectorizedArray::n_array_elements

4 years agoMerge pull request #8319 from kronbichler/step-67
Wolfgang Bangerth [Sat, 28 Mar 2020 21:16:10 +0000 (22:16 +0100)]
Merge pull request #8319 from kronbichler/step-67

step-67: explicit time integration with matrix-free implementations

4 years agoMerge pull request #9761 from masterleinad/remove_block_matrix_array
Martin Kronbichler [Sat, 28 Mar 2020 20:09:45 +0000 (21:09 +0100)]
Merge pull request #9761 from masterleinad/remove_block_matrix_array

Delete BlockMatrixArray and MeanValueFilter

4 years agoMerge pull request #9755 from bangerth/graphs
Martin Kronbichler [Sat, 28 Mar 2020 17:58:17 +0000 (18:58 +0100)]
Merge pull request #9755 from bangerth/graphs

Copy pieces of the module graph into some of the modules.

4 years agoMerge pull request #9759 from masterleinad/fix_dof_tools_12a
Martin Kronbichler [Sat, 28 Mar 2020 17:57:59 +0000 (18:57 +0100)]
Merge pull request #9759 from masterleinad/fix_dof_tools_12a

Fix failing test dof_tools_12a

4 years agoMerge pull request #9656 from kronbichler/mapping_q_optimize
Wolfgang Bangerth [Sat, 28 Mar 2020 17:03:45 +0000 (18:03 +0100)]
Merge pull request #9656 from kronbichler/mapping_q_optimize

Implement matrix-free evaluation of geometry for MF::MappingInfo

4 years agoChangelog 8319/head
Martin Kronbichler [Sat, 28 Mar 2020 16:23:58 +0000 (17:23 +0100)]
Changelog

4 years agoDelete BlockMatrixArray and MeanValueFilter 9761/head
Daniel Arndt [Thu, 26 Mar 2020 16:08:55 +0000 (12:08 -0400)]
Delete BlockMatrixArray and MeanValueFilter

4 years agoFix failing test dof_tools_12a 9759/head
Daniel Arndt [Sat, 28 Mar 2020 14:52:08 +0000 (10:52 -0400)]
Fix failing test dof_tools_12a

4 years agoChangelog 9656/head
Martin Kronbichler [Sat, 14 Mar 2020 21:57:25 +0000 (22:57 +0100)]
Changelog

4 years agoOne new test, one included in existing one
Martin Kronbichler [Sat, 14 Mar 2020 21:50:07 +0000 (22:50 +0100)]
One new test, one included in existing one

4 years agoImplement matrix-free evaluation of geometry for MF::MappingInfo
Martin Kronbichler [Fri, 13 Mar 2020 08:27:21 +0000 (09:27 +0100)]
Implement matrix-free evaluation of geometry for MF::MappingInfo

4 years agoInstantiate ShapeInfo for all vectorized arrays
Martin Kronbichler [Sat, 28 Mar 2020 14:33:45 +0000 (15:33 +0100)]
Instantiate ShapeInfo for all vectorized arrays

4 years agoFix Wolfgang's final comments
Martin Kronbichler [Sat, 28 Mar 2020 10:04:13 +0000 (11:04 +0100)]
Fix Wolfgang's final comments

4 years agoMerge pull request #5 from bangerth/step-67-3
Martin Kronbichler [Sat, 28 Mar 2020 06:57:08 +0000 (07:57 +0100)]
Merge pull request #5 from bangerth/step-67-3

My last changes to step-67.

4 years agoMerge pull request #9753 from masterleinad/remove_lapackfullmatrix_apply_lu_factorization
Martin Kronbichler [Sat, 28 Mar 2020 06:38:34 +0000 (07:38 +0100)]
Merge pull request #9753 from masterleinad/remove_lapackfullmatrix_apply_lu_factorization

Remove deprecated LAPACKFullMatrix::apply_lu_factorization

4 years agoMerge pull request #9754 from bangerth/52
Martin Kronbichler [Sat, 28 Mar 2020 06:37:51 +0000 (07:37 +0100)]
Merge pull request #9754 from bangerth/52

Also output the current time in .vtu files in step-52.


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