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https://gitweb.dealii.org/ - dealii.git/log
Wolfgang Bangerth [Sat, 23 Nov 2013 17:05:53 +0000 (17:05 +0000)]
Increase queue size for WorkStream::run operation as a result of some timing
efforts.
git-svn-id: https://svn.dealii.org/trunk@31773
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Guido Kanschat [Sat, 23 Nov 2013 08:02:51 +0000 (08:02 +0000)]
change encoding to UTF-8
git-svn-id: https://svn.dealii.org/trunk@31772
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Wolfgang Bangerth [Sat, 23 Nov 2013 04:03:12 +0000 (04:03 +0000)]
Document the changes in tutorials better.
git-svn-id: https://svn.dealii.org/trunk@31771
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Wolfgang Bangerth [Sat, 23 Nov 2013 04:01:49 +0000 (04:01 +0000)]
Also finish documentation of step-14.
git-svn-id: https://svn.dealii.org/trunk@31770
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Wolfgang Bangerth [Sat, 23 Nov 2013 01:57:28 +0000 (01:57 +0000)]
Document the most recent WorkStream changes to step-9. Update output. Use VTK format instead of the outdated GMV format.
git-svn-id: https://svn.dealii.org/trunk@31769
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Bruno Turcksin [Fri, 22 Nov 2013 22:30:20 +0000 (22:30 +0000)]
Add documentation for resolve_indices function.
git-svn-id: https://svn.dealii.org/trunk@31768
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Bruno Turcksin [Fri, 22 Nov 2013 20:58:21 +0000 (20:58 +0000)]
Add a function to resolve constraint indices.
git-svn-id: https://svn.dealii.org/trunk@31767
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Timo Heister [Fri, 22 Nov 2013 20:22:01 +0000 (20:22 +0000)]
inline DoFRenumbering::downstream to fix compilation issue with intel compilers; also remove deprecated MGDoFHandler variant in the process
git-svn-id: https://svn.dealii.org/trunk@31766
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Matthias Maier [Fri, 22 Nov 2013 15:58:22 +0000 (15:58 +0000)]
Put the -no-vec declaration into the right file :->
git-svn-id: https://svn.dealii.org/trunk@31765
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Timo Heister [Fri, 22 Nov 2013 15:41:05 +0000 (15:41 +0000)]
test requires trilinos
git-svn-id: https://svn.dealii.org/trunk@31764
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Wolfgang Bangerth [Fri, 22 Nov 2013 15:08:08 +0000 (15:08 +0000)]
Resolve another oddity in how GCC and ICC output __PRETTY_FUNCTION__, this time when virtual functions are involved.
git-svn-id: https://svn.dealii.org/trunk@31763
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Wolfgang Bangerth [Fri, 22 Nov 2013 15:05:35 +0000 (15:05 +0000)]
First part of documenting the switch to WorkStream in GradientEstimation.
git-svn-id: https://svn.dealii.org/trunk@31762
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Timo Heister [Fri, 22 Nov 2013 14:42:37 +0000 (14:42 +0000)]
rework r31759 to my liking and fix a few more places
git-svn-id: https://svn.dealii.org/trunk@31761
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Timo Heister [Fri, 22 Nov 2013 14:34:38 +0000 (14:34 +0000)]
disable vectorization on intel compilers because they produce wrong code. See issue 156.
git-svn-id: https://svn.dealii.org/trunk@31760
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Matthias Maier [Fri, 22 Nov 2013 14:28:04 +0000 (14:28 +0000)]
Replace "rand" by "myrand" in the testsuite to avoid a name clash
git-svn-id: https://svn.dealii.org/trunk@31759
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Matthias Maier [Fri, 22 Nov 2013 13:03:11 +0000 (13:03 +0000)]
Bugfix: create ${TARGET}.signed dummy file in CMakeFiles directory
git-svn-id: https://svn.dealii.org/trunk@31758
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Wolfgang Bangerth [Fri, 22 Nov 2013 03:34:54 +0000 (03:34 +0000)]
Simplify code slightly.
git-svn-id: https://svn.dealii.org/trunk@31756
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Eric Heien [Fri, 22 Nov 2013 02:09:28 +0000 (02:09 +0000)]
Removed comments after confirming changes work
git-svn-id: https://svn.dealii.org/trunk@31755
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Wolfgang Bangerth [Fri, 22 Nov 2013 01:14:27 +0000 (01:14 +0000)]
Document the third kind of WorkStream::run.
git-svn-id: https://svn.dealii.org/trunk@31754
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Timo Heister [Thu, 21 Nov 2013 22:17:34 +0000 (22:17 +0000)]
fix compiler warning
git-svn-id: https://svn.dealii.org/trunk@31753
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Timo Heister [Thu, 21 Nov 2013 21:31:42 +0000 (21:31 +0000)]
add test for issue 154 fixed in r31734
git-svn-id: https://svn.dealii.org/trunk@31752
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Timo Heister [Thu, 21 Nov 2013 16:24:24 +0000 (16:24 +0000)]
fix clang warnings
git-svn-id: https://svn.dealii.org/trunk@31751
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Timo Heister [Thu, 21 Nov 2013 15:54:28 +0000 (15:54 +0000)]
remove one clang compiler warning
git-svn-id: https://svn.dealii.org/trunk@31750
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Timo Heister [Thu, 21 Nov 2013 15:52:52 +0000 (15:52 +0000)]
fix test output
git-svn-id: https://svn.dealii.org/trunk@31749
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Timo Heister [Thu, 21 Nov 2013 15:49:28 +0000 (15:49 +0000)]
check in proposed change in issue 148 to get rid of crashes in the tests. Not sure if the logic is correct.
git-svn-id: https://svn.dealii.org/trunk@31748
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Timo Heister [Thu, 21 Nov 2013 15:45:08 +0000 (15:45 +0000)]
run test with one proc too, because it crashes on some machines
git-svn-id: https://svn.dealii.org/trunk@31747
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Timo Heister [Thu, 21 Nov 2013 15:44:42 +0000 (15:44 +0000)]
fix exception specification for rand() in tests
git-svn-id: https://svn.dealii.org/trunk@31746
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Timo Heister [Thu, 21 Nov 2013 03:07:40 +0000 (03:07 +0000)]
write own rand() function for the test suite because cygwin has a different implementation. I hope this will not break any test.
git-svn-id: https://svn.dealii.org/trunk@31745
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Timo Heister [Thu, 21 Nov 2013 02:18:32 +0000 (02:18 +0000)]
reference tests.h in test
git-svn-id: https://svn.dealii.org/trunk@31744
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Matthias Maier [Thu, 21 Nov 2013 01:22:06 +0000 (01:22 +0000)]
Testsuite: Bugfix: Fix a typo that prevented all tests under ./deal.II/tests from being set up
git-svn-id: https://svn.dealii.org/trunk@31743
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Matthias Maier [Wed, 20 Nov 2013 21:55:56 +0000 (21:55 +0000)]
Documentation update
git-svn-id: https://svn.dealii.org/trunk@31741
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Matthias Maier [Wed, 20 Nov 2013 21:33:59 +0000 (21:33 +0000)]
CMake: Forbid to use ninja together with icc
git-svn-id: https://svn.dealii.org/trunk@31740
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Matthias Maier [Wed, 20 Nov 2013 21:08:30 +0000 (21:08 +0000)]
Testsuite: Some more refactoring and cleanup
git-svn-id: https://svn.dealii.org/trunk@31739
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Timo Heister [Wed, 20 Nov 2013 20:27:59 +0000 (20:27 +0000)]
clean up and simplify recent changes in exceptions.cc
git-svn-id: https://svn.dealii.org/trunk@31738
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Daniel Arndt [Wed, 20 Nov 2013 18:55:19 +0000 (18:55 +0000)]
Finally fixed the bug in make_zero_boundary_constraints (Issue 154)
git-svn-id: https://svn.dealii.org/trunk@31734
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Daniel Arndt [Wed, 20 Nov 2013 17:39:44 +0000 (17:39 +0000)]
Revert false correction.
git-svn-id: https://svn.dealii.org/trunk@31733
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Daniel Arndt [Wed, 20 Nov 2013 17:35:25 +0000 (17:35 +0000)]
Fixed bug regarding the use of ComponentMask in make_zero_boundary_constraints.
git-svn-id: https://svn.dealii.org/trunk@31732
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Matthias Maier [Wed, 20 Nov 2013 17:31:56 +0000 (17:31 +0000)]
Bufix: Well, it is a good idea to not destroy formerly working functionality
git-svn-id: https://svn.dealii.org/trunk@31731
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Matthias Maier [Wed, 20 Nov 2013 16:11:01 +0000 (16:11 +0000)]
Testsuite: Remove the dependency of setup_tests on a built library, let's see...
git-svn-id: https://svn.dealii.org/trunk@31730
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Matthias Maier [Wed, 20 Nov 2013 15:41:51 +0000 (15:41 +0000)]
Testsuite: Refactor testsuite setup into its own project.
git-svn-id: https://svn.dealii.org/trunk@31728
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Wolfgang Bangerth [Wed, 20 Nov 2013 14:12:30 +0000 (14:12 +0000)]
Link to the CS&D paper.
git-svn-id: https://svn.dealii.org/trunk@31726
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Wolfgang Bangerth [Wed, 20 Nov 2013 14:00:04 +0000 (14:00 +0000)]
Minor indentation changes.
git-svn-id: https://svn.dealii.org/trunk@31725
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Matthias Maier [Wed, 20 Nov 2013 10:31:09 +0000 (10:31 +0000)]
Cleanup ExceptionBase: Inherit from std::exception and do the c_string handling directly to avoid the const_casts
git-svn-id: https://svn.dealii.org/trunk@31723
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Martin Kronbichler [Wed, 20 Nov 2013 09:54:38 +0000 (09:54 +0000)]
Introduce IterationNumberControl to perform a fixed number of solver steps without throwing an exception.
git-svn-id: https://svn.dealii.org/trunk@31722
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Timo Heister [Tue, 19 Nov 2013 22:27:40 +0000 (22:27 +0000)]
defer backtrace lookup in dealii::Exception for performance reasons
git-svn-id: https://svn.dealii.org/trunk@31720
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Matthias Maier [Tue, 19 Nov 2013 21:43:56 +0000 (21:43 +0000)]
CMake: Bugfix: Only run "make sign" if it is necessary
git-svn-id: https://svn.dealii.org/trunk@31718
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Matthias Maier [Tue, 19 Nov 2013 21:37:09 +0000 (21:37 +0000)]
CMake: Provide a possibility to automatically sign generated executables on Mac OSX
git-svn-id: https://svn.dealii.org/trunk@31717
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Matthias Maier [Tue, 19 Nov 2013 21:14:03 +0000 (21:14 +0000)]
Documentation: Add a small section about how to create a new category
git-svn-id: https://svn.dealii.org/trunk@31716
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Timo Heister [Tue, 19 Nov 2013 19:55:52 +0000 (19:55 +0000)]
replace include of dof_handler_policy.h in dof_handler.h by forward declaration
git-svn-id: https://svn.dealii.org/trunk@31713
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Timo Heister [Tue, 19 Nov 2013 19:53:40 +0000 (19:53 +0000)]
test only works if you have petsc and trilinos
git-svn-id: https://svn.dealii.org/trunk@31712
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Timo Heister [Tue, 19 Nov 2013 16:40:27 +0000 (16:40 +0000)]
rework r31702
git-svn-id: https://svn.dealii.org/trunk@31711
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Timo Heister [Tue, 19 Nov 2013 15:52:06 +0000 (15:52 +0000)]
fix r31695, explicit instantiations are not needed after all
git-svn-id: https://svn.dealii.org/trunk@31710
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Timo Heister [Tue, 19 Nov 2013 15:14:30 +0000 (15:14 +0000)]
rewrap comments (phew)
git-svn-id: https://svn.dealii.org/trunk@31709
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Timo Heister [Tue, 19 Nov 2013 15:06:06 +0000 (15:06 +0000)]
update documentation
git-svn-id: https://svn.dealii.org/trunk@31708
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Matthias Maier [Tue, 19 Nov 2013 14:52:55 +0000 (14:52 +0000)]
Testsuite: Bugfix: Allow to run the testsuite script from within an insource build
git-svn-id: https://svn.dealii.org/trunk@31707
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Toby D. Young [Tue, 19 Nov 2013 13:57:06 +0000 (13:57 +0000)]
Bug fix.
git-svn-id: https://svn.dealii.org/trunk@31706
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Wolfgang Bangerth [Tue, 19 Nov 2013 13:54:40 +0000 (13:54 +0000)]
Provide more context in the documentation and link to a paper in preparation.
git-svn-id: https://svn.dealii.org/trunk@31705
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Timo Heister [Tue, 19 Nov 2013 00:56:36 +0000 (00:56 +0000)]
do not use typeid internally because this is broken on intel 13+. Instead: emulate this in the DoFHandlerPolicy classes. Also update test output
git-svn-id: https://svn.dealii.org/trunk@31702
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Timo Heister [Mon, 18 Nov 2013 16:07:44 +0000 (16:07 +0000)]
add missing instantiations (for intel)
git-svn-id: https://svn.dealii.org/trunk@31701
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Timo Heister [Mon, 18 Nov 2013 13:52:31 +0000 (13:52 +0000)]
test: add whitespace to output so that numdiff can work, output more digits
git-svn-id: https://svn.dealii.org/trunk@31700
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Timo Heister [Mon, 18 Nov 2013 13:50:11 +0000 (13:50 +0000)]
loosen tolerance in test to make it pass
git-svn-id: https://svn.dealii.org/trunk@31699
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Timo Heister [Mon, 18 Nov 2013 12:17:34 +0000 (12:17 +0000)]
output more digits in test
git-svn-id: https://svn.dealii.org/trunk@31698
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Timo Heister [Mon, 18 Nov 2013 03:33:02 +0000 (03:33 +0000)]
output more digits in test
git-svn-id: https://svn.dealii.org/trunk@31697
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Timo Heister [Mon, 18 Nov 2013 01:52:08 +0000 (01:52 +0000)]
mention changes
git-svn-id: https://svn.dealii.org/trunk@31696
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Timo Heister [Mon, 18 Nov 2013 01:43:40 +0000 (01:43 +0000)]
fix template instantiations for GridGenerator::parallelogram, do not pass array as a reference
git-svn-id: https://svn.dealii.org/trunk@31695
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Wolfgang Bangerth [Mon, 18 Nov 2013 01:32:14 +0000 (01:32 +0000)]
Augment documentation.
git-svn-id: https://svn.dealii.org/trunk@31694
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Wolfgang Bangerth [Mon, 18 Nov 2013 01:31:26 +0000 (01:31 +0000)]
Fix the failure of find_cell_10a by implementing a better stopping criterion for the Newton iteration, using a variable metric Newton method.
git-svn-id: https://svn.dealii.org/trunk@31693
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Timo Heister [Mon, 18 Nov 2013 00:04:49 +0000 (00:04 +0000)]
fix typo
git-svn-id: https://svn.dealii.org/trunk@31692
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Wolfgang Bangerth [Sun, 17 Nov 2013 19:36:35 +0000 (19:36 +0000)]
Also run test in optimized mode.
git-svn-id: https://svn.dealii.org/trunk@31691
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Wolfgang Bangerth [Sun, 17 Nov 2013 19:35:59 +0000 (19:35 +0000)]
Fix one testcase, see https://code.google.com/p/dealii/issues/detail?id=134 . Since we are having so much trouble with this function, I also left my debug code in there, guarded with \#ifdef DEBUG_NO_NORMAL_FLUX. Adjust testcase.
git-svn-id: https://svn.dealii.org/trunk@31690
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Wolfgang Bangerth [Sun, 17 Nov 2013 19:35:33 +0000 (19:35 +0000)]
Fix one testcase, see https://code.google.com/p/dealii/issues/detail?id=134 . Since we are having so much trouble with this function, I also left my debug code in there, guarded with \#ifdef DEBUG_NO_NORMAL_FLUX.
git-svn-id: https://svn.dealii.org/trunk@31689
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Martin Kronbichler [Sun, 17 Nov 2013 15:45:16 +0000 (15:45 +0000)]
Fix non-MPI case
git-svn-id: https://svn.dealii.org/trunk@31688
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Martin Kronbichler [Sun, 17 Nov 2013 15:44:08 +0000 (15:44 +0000)]
Fix description
git-svn-id: https://svn.dealii.org/trunk@31687
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Martin Steigemann [Sun, 17 Nov 2013 14:49:49 +0000 (14:49 +0000)]
Fixed: FETools::inteprolation_difference was not working with TrilinosWrappers::MPI::Vectors with ghost entries, also, TrilinosWrappers::VectorBase has a get_mpi_communicator method now.
git-svn-id: https://svn.dealii.org/trunk@31686
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Wolfgang Bangerth [Sat, 16 Nov 2013 12:46:15 +0000 (12:46 +0000)]
Fix a note in a comment.
git-svn-id: https://svn.dealii.org/trunk@31684
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Matthias Maier [Sat, 16 Nov 2013 09:39:22 +0000 (09:39 +0000)]
Testsuite: Fix data_out_stack_0?
git-svn-id: https://svn.dealii.org/trunk@31683
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Matthias Maier [Sat, 16 Nov 2013 08:31:05 +0000 (08:31 +0000)]
Bugfix: Define FP_USE_THREAD_SAFE_EVAL in case of enabled multithreading support.
git-svn-id: https://svn.dealii.org/trunk@31682
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Matthias Maier [Sat, 16 Nov 2013 08:04:28 +0000 (08:04 +0000)]
Set missing svn:keywords property on a bunch of files
git-svn-id: https://svn.dealii.org/trunk@31681
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Matthias Maier [Sat, 16 Nov 2013 07:51:41 +0000 (07:51 +0000)]
Fix a lot of stray $Id$s
git-svn-id: https://svn.dealii.org/trunk@31680
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Wolfgang Bangerth [Fri, 15 Nov 2013 23:12:48 +0000 (23:12 +0000)]
Fix error message.
git-svn-id: https://svn.dealii.org/trunk@31679
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Wolfgang Bangerth [Fri, 15 Nov 2013 21:28:50 +0000 (21:28 +0000)]
Minor language fix.
git-svn-id: https://svn.dealii.org/trunk@31678
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Timo Heister [Fri, 15 Nov 2013 21:11:09 +0000 (21:11 +0000)]
update comment
git-svn-id: https://svn.dealii.org/trunk@31677
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Timo Heister [Fri, 15 Nov 2013 21:10:16 +0000 (21:10 +0000)]
fix test output
git-svn-id: https://svn.dealii.org/trunk@31676
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Timo Heister [Fri, 15 Nov 2013 21:10:02 +0000 (21:10 +0000)]
assert that we have a enough fe components in compute_no_normal_flux_constraints
git-svn-id: https://svn.dealii.org/trunk@31675
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Timo Heister [Fri, 15 Nov 2013 18:52:33 +0000 (18:52 +0000)]
add failing test for no_flux
git-svn-id: https://svn.dealii.org/trunk@31674
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Matthias Maier [Fri, 15 Nov 2013 15:35:45 +0000 (15:35 +0000)]
Add PETSC_WITH_COMPLEX to Config.sample
git-svn-id: https://svn.dealii.org/trunk@31673
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Matthias Maier [Fri, 15 Nov 2013 15:31:05 +0000 (15:31 +0000)]
Testsuite: Fix the issue with binary outputs and data_out_base_dx
git-svn-id: https://svn.dealii.org/trunk@31672
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Wolfgang Bangerth [Fri, 15 Nov 2013 15:23:01 +0000 (15:23 +0000)]
Split a function in hopes to alleviate linker errors with ICC.
git-svn-id: https://svn.dealii.org/trunk@31671
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Matthias Maier [Fri, 15 Nov 2013 14:30:09 +0000 (14:30 +0000)]
Testsuite: Also accept numerical values that have a relative error of less than 1.e-8 (but an absolute error of more than 1.e-6)
git-svn-id: https://svn.dealii.org/trunk@31670
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Matthias Maier [Thu, 14 Nov 2013 23:29:32 +0000 (23:29 +0000)]
CMake: Bugfix: Do not use >/dev/null on native Windows targets
git-svn-id: https://svn.dealii.org/trunk@31669
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Matthias Maier [Thu, 14 Nov 2013 23:29:29 +0000 (23:29 +0000)]
CMake: Remove debug output
git-svn-id: https://svn.dealii.org/trunk@31668
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Wolfgang Bangerth [Thu, 14 Nov 2013 23:17:10 +0000 (23:17 +0000)]
Replace the expensive computation of a set intersection with the cheap computation whether two sets have a nonempty intersection at all. We don't need the intersection anyway.
git-svn-id: https://svn.dealii.org/trunk@31667
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Matthias Maier [Thu, 14 Nov 2013 22:20:28 +0000 (22:20 +0000)]
CMake: Print TEST_DIR during configuration so that one actually has a clue which TEST_DIR was processed
git-svn-id: https://svn.dealii.org/trunk@31666
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Guido Kanschat [Thu, 14 Nov 2013 22:19:53 +0000 (22:19 +0000)]
fixed output
git-svn-id: https://svn.dealii.org/trunk@31665
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Guido Kanschat [Thu, 14 Nov 2013 22:10:37 +0000 (22:10 +0000)]
add missing initialization
git-svn-id: https://svn.dealii.org/trunk@31664
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Wolfgang Bangerth [Thu, 14 Nov 2013 21:40:04 +0000 (21:40 +0000)]
Adjust the output of some tests so that we get below the threshold of numdiff.
git-svn-id: https://svn.dealii.org/trunk@31663
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Wolfgang Bangerth [Thu, 14 Nov 2013 21:38:59 +0000 (21:38 +0000)]
Initialize a variable to avoid a testsuite failure with ICC 14.
git-svn-id: https://svn.dealii.org/trunk@31662
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Wolfgang Bangerth [Thu, 14 Nov 2013 20:38:31 +0000 (20:38 +0000)]
Avoid instantiating FE_FaceQ and FE_FaceP in 1d.
git-svn-id: https://svn.dealii.org/trunk@31661
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Wolfgang Bangerth [Thu, 14 Nov 2013 20:29:27 +0000 (20:29 +0000)]
Match function instantiation to the original declaration in hopes to
make ICC 14 happy. Unfortunately, this is not the case.
git-svn-id: https://svn.dealii.org/trunk@31660
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Wolfgang Bangerth [Thu, 14 Nov 2013 20:23:07 +0000 (20:23 +0000)]
Provide a missing template instantiation.
git-svn-id: https://svn.dealii.org/trunk@31659
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