]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
4 years agoMerge pull request #9138 from bangerth/doc-87
Martin Kronbichler [Wed, 4 Dec 2019 08:10:11 +0000 (09:10 +0100)]
Merge pull request #9138 from bangerth/doc-87

Minor grammar updates.

4 years agoMerge pull request #9136 from bangerth/61-5
Martin Kronbichler [Wed, 4 Dec 2019 08:09:04 +0000 (09:09 +0100)]
Merge pull request #9136 from bangerth/61-5

Link to a paper that describes step-61.

4 years agoMerge pull request #9128 from bangerth/61-2
Martin Kronbichler [Wed, 4 Dec 2019 08:07:53 +0000 (09:07 +0100)]
Merge pull request #9128 from bangerth/61-2

Break postprocessing the velocity out of the function that computes errors

4 years agoMinor grammar updates. 9138/head
Wolfgang Bangerth [Wed, 4 Dec 2019 06:01:34 +0000 (23:01 -0700)]
Minor grammar updates.

4 years agoMerge pull request #9130 from bangerth/61-4
Daniel Arndt [Tue, 3 Dec 2019 22:29:14 +0000 (17:29 -0500)]
Merge pull request #9130 from bangerth/61-4

Use a better way to create graphical output in step-61.

4 years agoMerge pull request #9133 from bangerth/std_cxx11
Daniel Arndt [Tue, 3 Dec 2019 22:27:41 +0000 (17:27 -0500)]
Merge pull request #9133 from bangerth/std_cxx11

Deprecate the files in base/std_cxx11 -- we no longer need them.

4 years agoLink to a paper that describes step-61. 9136/head
Wolfgang Bangerth [Tue, 3 Dec 2019 18:36:07 +0000 (11:36 -0700)]
Link to a paper that describes step-61.

4 years agoUse DEAL_II_WARNING instead. 9133/head
Wolfgang Bangerth [Tue, 3 Dec 2019 18:20:33 +0000 (11:20 -0700)]
Use DEAL_II_WARNING instead.

4 years agoAdd changelog entry.
Wolfgang Bangerth [Tue, 3 Dec 2019 01:54:41 +0000 (18:54 -0700)]
Add changelog entry.

4 years agoDeprecate the files in base/std_cxx11 -- we no longer need them.
Wolfgang Bangerth [Tue, 3 Dec 2019 01:53:21 +0000 (18:53 -0700)]
Deprecate the files in base/std_cxx11 -- we no longer need them.

4 years agoAdd a changelog entry. 9130/head
Wolfgang Bangerth [Tue, 3 Dec 2019 00:31:28 +0000 (17:31 -0700)]
Add a changelog entry.

4 years agoUse a better way to create graphical output in step-61.
Wolfgang Bangerth [Tue, 3 Dec 2019 00:29:55 +0000 (17:29 -0700)]
Use a better way to create graphical output in step-61.

Specifically, rather than creating two output files for the cell pressures
and the Darcy velocities, put them all into a single file using a method
that @kronbichler introduced a while ago.

4 years agoMerge pull request #9127 from bangerth/61-1
David Wells [Tue, 3 Dec 2019 16:21:12 +0000 (11:21 -0500)]
Merge pull request #9127 from bangerth/61-1

Augment step-61 documentation.

4 years agoMerge pull request #9117 from marcfehling/fix-pthread
Matthias Maier [Tue, 3 Dec 2019 15:59:53 +0000 (09:59 -0600)]
Merge pull request #9117 from marcfehling/fix-pthread

Fixed cmake 3.16.0 incompatibility.

4 years agoMerge pull request #9132 from bangerth/std_cxx1x
Daniel Arndt [Tue, 3 Dec 2019 13:18:46 +0000 (08:18 -0500)]
Merge pull request #9132 from bangerth/std_cxx1x

Remove long deprecated headers for C++1x.

4 years agoMerge pull request #9131 from bangerth/mpi
Martin Kronbichler [Tue, 3 Dec 2019 10:25:41 +0000 (11:25 +0100)]
Merge pull request #9131 from bangerth/mpi

Clarify Utilities::MPI::some_to_some().

4 years agoMerge pull request #9129 from bangerth/61-3
Martin Kronbichler [Tue, 3 Dec 2019 07:25:18 +0000 (08:25 +0100)]
Merge pull request #9129 from bangerth/61-3

Use 5 refinements in step-61 as default.

4 years agoMerge pull request #9104 from masterleinad/mf_cuda_float
Martin Kronbichler [Tue, 3 Dec 2019 07:17:27 +0000 (08:17 +0100)]
Merge pull request #9104 from masterleinad/mf_cuda_float

Allow using float shape functions

4 years agoAdd a changelog entry. 9132/head
Wolfgang Bangerth [Tue, 3 Dec 2019 01:36:56 +0000 (18:36 -0700)]
Add a changelog entry.

4 years agoRemove long deprecated headers for C++1x.
Wolfgang Bangerth [Tue, 3 Dec 2019 01:30:27 +0000 (18:30 -0700)]
Remove long deprecated headers for C++1x.

4 years agoRemove references to old std_cxx1x namespace.
Wolfgang Bangerth [Tue, 3 Dec 2019 01:34:03 +0000 (18:34 -0700)]
Remove references to old std_cxx1x namespace.

4 years agoRemove a test no longer necessary.
Wolfgang Bangerth [Tue, 3 Dec 2019 01:31:24 +0000 (18:31 -0700)]
Remove a test no longer necessary.

4 years agoClarify Utilities::MPI::some_to_some(). 9131/head
Wolfgang Bangerth [Tue, 3 Dec 2019 01:07:09 +0000 (18:07 -0700)]
Clarify Utilities::MPI::some_to_some().

4 years agoMerge pull request #9121 from luca-heltai/fix-some-to-some
Wolfgang Bangerth [Tue, 3 Dec 2019 01:04:16 +0000 (18:04 -0700)]
Merge pull request #9121 from luca-heltai/fix-some-to-some

Fix some to some.

4 years agoUse 5 refinements in step-61 as default. 9129/head
Wolfgang Bangerth [Tue, 3 Dec 2019 00:05:19 +0000 (17:05 -0700)]
Use 5 refinements in step-61 as default.

4 years agoAdd a changelog entry. 9128/head
Wolfgang Bangerth [Mon, 2 Dec 2019 22:57:52 +0000 (15:57 -0700)]
Add a changelog entry.

4 years agoBreak postprocessing the velocity out of the function that computes errors.
Wolfgang Bangerth [Mon, 2 Dec 2019 22:57:30 +0000 (15:57 -0700)]
Break postprocessing the velocity out of the function that computes errors.

The step-61 program now has a separate function
'compute_postprocessed_velocity' that computes the velocity field as
a postprocessing step after computing the pressure variable. The
resulting velocity field is used in both computing errors and when
creating graphical output.

There is really no functional change, it just rearranges the code
and makes it a bit simpler to read. The only functional simplification
is that we don't compute the velocity at quadrature points from shape
function times coefficient, but use FEValues::get_function_values()
instead.

4 years agoMerge pull request #9115 from tamiko/do_not_export_bundled
Wolfgang Bangerth [Mon, 2 Dec 2019 22:40:18 +0000 (15:40 -0700)]
Merge pull request #9115 from tamiko/do_not_export_bundled

Do not export bundled subdirectory if empty

4 years agoAugment step-61 documentation. 9127/head
Wolfgang Bangerth [Mon, 2 Dec 2019 21:55:53 +0000 (14:55 -0700)]
Augment step-61 documentation.

4 years agoFixed deadlock. 9121/head
Luca Heltai [Mon, 2 Dec 2019 17:32:50 +0000 (18:32 +0100)]
Fixed deadlock.

4 years agoMerge pull request #9122 from drwells/unused-var-warning
Daniel Arndt [Mon, 2 Dec 2019 19:55:42 +0000 (14:55 -0500)]
Merge pull request #9122 from drwells/unused-var-warning

Silence some unused variable warnings.

4 years agoAllow using float shape functions 9104/head
Daniel Arndt [Wed, 27 Nov 2019 23:42:45 +0000 (18:42 -0500)]
Allow using float shape functions

4 years agoFixed cmake 3.16.0 incompatibility. 9117/head
Marc Fehling [Sat, 30 Nov 2019 23:51:16 +0000 (00:51 +0100)]
Fixed cmake 3.16.0 incompatibility.

4 years agoReplace compute_point_to_point_communication_pattern with compute_n_point_to_point_co...
Luca Heltai [Mon, 2 Dec 2019 16:06:27 +0000 (17:06 +0100)]
Replace compute_point_to_point_communication_pattern with compute_n_point_to_point_communications

4 years agoSilence some unused variable warnings. 9122/head
David Wells [Mon, 2 Dec 2019 16:04:49 +0000 (11:04 -0500)]
Silence some unused variable warnings.

4 years agoApplied suggestion.
Luca Heltai [Mon, 2 Dec 2019 12:23:36 +0000 (13:23 +0100)]
Applied suggestion.

4 years agoFix some to some.
Luca Heltai [Mon, 2 Dec 2019 10:51:20 +0000 (11:51 +0100)]
Fix some to some.

4 years agoMerge pull request #9110 from masterleinad/serial_tria_particle_handler
Luca Heltai [Mon, 2 Dec 2019 08:52:10 +0000 (09:52 +0100)]
Merge pull request #9110 from masterleinad/serial_tria_particle_handler

Allow using serial triangulations with ParticleHandler

4 years agoMerge pull request #9119 from masterleinad/disable_warning_python_wrappers
Daniel Arndt [Mon, 2 Dec 2019 04:52:44 +0000 (23:52 -0500)]
Merge pull request #9119 from masterleinad/disable_warning_python_wrappers

Disable warning in python-wrappers only for newer clang

4 years agoMerge pull request #9118 from peterrum/get_size_info
Daniel Arndt [Sun, 1 Dec 2019 21:12:03 +0000 (16:12 -0500)]
Merge pull request #9118 from peterrum/get_size_info

Remove MF::get_size_info()

4 years agoDisable warning in python-wrappers only for newer clang 9119/head
Daniel Arndt [Sun, 1 Dec 2019 18:02:20 +0000 (13:02 -0500)]
Disable warning in python-wrappers only for newer clang

4 years agoDo not use MF::get_size_info() 9118/head
Peter Munch [Sun, 1 Dec 2019 08:27:31 +0000 (09:27 +0100)]
Do not use MF::get_size_info()

4 years agoRemove restriction from Particles::Generators tests 9110/head
Daniel Arndt [Sun, 1 Dec 2019 16:30:04 +0000 (11:30 -0500)]
Remove restriction from Particles::Generators tests

4 years agoRemove p4est restriction in Particles::DataOut
Daniel Arndt [Sun, 1 Dec 2019 15:44:10 +0000 (10:44 -0500)]
Remove p4est restriction in Particles::DataOut

4 years agoFix numbering in ParticleHandler::insert_particles()
Daniel Arndt [Sat, 30 Nov 2019 15:55:16 +0000 (10:55 -0500)]
Fix numbering in ParticleHandler::insert_particles()

4 years agoAllow using serial triangulations with ParticleHandler
Daniel Arndt [Fri, 29 Nov 2019 20:00:23 +0000 (15:00 -0500)]
Allow using serial triangulations with ParticleHandler

4 years agoMerge pull request #9072 from luca-heltai/output-particles
Daniel Arndt [Sun, 1 Dec 2019 15:30:34 +0000 (10:30 -0500)]
Merge pull request #9072 from luca-heltai/output-particles

Add simple output for particles.

4 years agoMerge pull request #8963 from peterrum/gridout_vtu_pvtu
Daniel Arndt [Sun, 1 Dec 2019 01:35:49 +0000 (20:35 -0500)]
Merge pull request #8963 from peterrum/gridout_vtu_pvtu

Update tutorials to use write_vtu_with_pvtu_record

4 years agoMerge pull request #8661 from tjhei/fe_interface_values_2
Daniel Arndt [Sun, 1 Dec 2019 01:35:13 +0000 (20:35 -0500)]
Merge pull request #8661 from tjhei/fe_interface_values_2

FEInterfaceValues: replace step-12

4 years agoFix compiler warnings 8661/head
Daniel Arndt [Sat, 30 Nov 2019 18:55:22 +0000 (13:55 -0500)]
Fix compiler warnings

4 years agoMerge pull request #9097 from kronbichler/fix_mf_setup
Daniel Arndt [Sat, 30 Nov 2019 17:56:48 +0000 (12:56 -0500)]
Merge pull request #9097 from kronbichler/fix_mf_setup

Fix MatrixFree::reinit() with FE_Q with face integration facilities

4 years agoMerge pull request #9113 from rezarastak/mpi_min_arrayview
Daniel Arndt [Sat, 30 Nov 2019 17:09:49 +0000 (12:09 -0500)]
Merge pull request #9113 from rezarastak/mpi_min_arrayview

explicit instanciation is provided for Utilities::MPI::min

4 years agoMerge pull request #8774 from jpthiele/hdf5_documentation
Daniel Arndt [Sat, 30 Nov 2019 16:26:18 +0000 (11:26 -0500)]
Merge pull request #8774 from jpthiele/hdf5_documentation

Hdf5 documentation

4 years agoDo not export bundled subdirectory if empty 9115/head
Matthias Maier [Sat, 30 Nov 2019 16:06:41 +0000 (10:06 -0600)]
Do not export bundled subdirectory if empty

Avoid recording a nonexistent include directory in case we do not
install any bundled header files.

4 years agoexplicit instanciation is provided for Utilities::MPI::min and max with ArrayView 9113/head
Reza Rastak [Sat, 30 Nov 2019 08:46:33 +0000 (00:46 -0800)]
explicit instanciation is provided for Utilities::MPI::min and max with ArrayView

4 years agoMerge pull request #9103 from peterrum/partition_triangulation_zorder_nonblocked
Martin Kronbichler [Fri, 29 Nov 2019 08:21:21 +0000 (09:21 +0100)]
Merge pull request #9103 from peterrum/partition_triangulation_zorder_nonblocked

Relax assumpitions in GridTools::partition_triangulation_zorder

4 years agoMerge pull request #9105 from masterleinad/simplify_free
Martin Kronbichler [Fri, 29 Nov 2019 08:20:22 +0000 (09:20 +0100)]
Merge pull request #9105 from masterleinad/simplify_free

Simplify CUDAWrappers::MatrixFree::free

4 years agoMerge pull request #9108 from simonsticko/doc_fix_get_active_neighbors
Daniel Arndt [Fri, 29 Nov 2019 00:36:24 +0000 (19:36 -0500)]
Merge pull request #9108 from simonsticko/doc_fix_get_active_neighbors

Add note on template parameter in doc of GridTools::get_active_neighbors

4 years agoAdd note on template parameter to GridTools::get_active_neighbors. 9108/head
Simon Sticko [Thu, 28 Nov 2019 10:06:19 +0000 (11:06 +0100)]
Add note on template parameter to GridTools::get_active_neighbors.

4 years agoSimplify CUDAWrappers::MatrixFree::free 9105/head
Daniel Arndt [Wed, 27 Nov 2019 23:54:15 +0000 (18:54 -0500)]
Simplify CUDAWrappers::MatrixFree::free

4 years agoRelax assumpitions in GridTools::partition_triangulation_zorder 9103/head
Peter Munch [Wed, 27 Nov 2019 11:19:08 +0000 (12:19 +0100)]
Relax assumpitions in GridTools::partition_triangulation_zorder

4 years agoAdded include guards in the source file 9072/head
blaisb [Wed, 27 Nov 2019 15:46:39 +0000 (10:46 -0500)]
Added include guards in the source file

4 years agoAdded P4est guard to ensure consistency with the reste of the particle library
blaisb [Wed, 27 Nov 2019 15:24:16 +0000 (10:24 -0500)]
Added P4est guard to ensure consistency with the reste of the particle library

4 years agoFixed indentation
blaisb [Wed, 27 Nov 2019 12:26:01 +0000 (07:26 -0500)]
Fixed indentation

4 years agoFixed according to comments
blaisb [Wed, 27 Nov 2019 12:17:20 +0000 (07:17 -0500)]
Fixed according to comments

- Added description for the patches member of the data out class
- Added lines in  between the functions
- Added forward declaration of the particle handler in the data out
class
- Removed non-useful headers

4 years agoMerge pull request #9101 from kronbichler/reduce_mapping_q_memory
Martin Kronbichler [Wed, 27 Nov 2019 09:35:24 +0000 (10:35 +0100)]
Merge pull request #9101 from kronbichler/reduce_mapping_q_memory

Only allocate some MappingQGeneric internal data if necessary

4 years agoChangelog 9101/head
Martin Kronbichler [Tue, 26 Nov 2019 21:38:55 +0000 (22:38 +0100)]
Changelog

4 years agoOnly allocating mapping internal data if necessary
Martin Kronbichler [Tue, 26 Nov 2019 21:38:47 +0000 (22:38 +0100)]
Only allocating mapping internal data if necessary

4 years agoFixed data out according to comments
Bruno Blais [Tue, 26 Nov 2019 22:05:00 +0000 (17:05 -0500)]
Fixed data out according to comments

- Removed now useless comments
- Pruned out includes that were not needed
- Added documentation for constructor and destructor
- Removed useless line in the test documentation

4 years agoAdd python wrappers for MappingQGeneric (#9055)
Bruno Turcksin [Tue, 26 Nov 2019 13:08:19 +0000 (08:08 -0500)]
Add python wrappers for MappingQGeneric (#9055)

Add python wrappers for MappingQGeneric

4 years agoMerge pull request #9088 from masterleinad/suppress_warning_python_bindings
Martin Kronbichler [Tue, 26 Nov 2019 08:06:43 +0000 (09:06 +0100)]
Merge pull request #9088 from masterleinad/suppress_warning_python_bindings

Suppress warning in python-bindings

4 years agoChangelog 9097/head
Martin Kronbichler [Tue, 26 Nov 2019 07:46:04 +0000 (08:46 +0100)]
Changelog

4 years agoNew test case
Martin Kronbichler [Tue, 26 Nov 2019 07:43:44 +0000 (08:43 +0100)]
New test case

4 years agoFix bug in access of dof indices without resolving constraints
Martin Kronbichler [Tue, 26 Nov 2019 07:43:22 +0000 (08:43 +0100)]
Fix bug in access of dof indices without resolving constraints

4 years agoUse range-based for loop
Martin Kronbichler [Tue, 26 Nov 2019 07:41:33 +0000 (08:41 +0100)]
Use range-based for loop

4 years agoMerge pull request #9091 from tjhei/readme_build_status
Martin Kronbichler [Tue, 26 Nov 2019 07:05:38 +0000 (08:05 +0100)]
Merge pull request #9091 from tjhei/readme_build_status

README.md: display build status

4 years agoMerge pull request #9094 from kronbichler/tolerance_find_all_active_cells_around_point
Martin Kronbichler [Tue, 26 Nov 2019 07:04:46 +0000 (08:04 +0100)]
Merge pull request #9094 from kronbichler/tolerance_find_all_active_cells_around_point

Relax default tolerance for find_all_active_cells_around_point

4 years agoMerge pull request #9095 from tjhei/jenkins_allow_master
Daniel Arndt [Mon, 25 Nov 2019 22:46:14 +0000 (17:46 -0500)]
Merge pull request #9095 from tjhei/jenkins_allow_master

jenkins: allow testing master

4 years agojenkins: allow testing master 9095/head
Timo Heister [Mon, 25 Nov 2019 20:28:44 +0000 (15:28 -0500)]
jenkins: allow testing master

4 years agoupdate 9091/head
Timo Heister [Mon, 25 Nov 2019 20:28:22 +0000 (15:28 -0500)]
update

4 years agoAdd test case 9094/head
Martin Kronbichler [Mon, 25 Nov 2019 18:54:07 +0000 (19:54 +0100)]
Add test case

4 years agoRelax default tolerance for find_all_active_cells_around_point
Martin Kronbichler [Mon, 25 Nov 2019 18:53:55 +0000 (19:53 +0100)]
Relax default tolerance for find_all_active_cells_around_point

4 years agoMerge pull request #9090 from tjhei/doc_report_where
Matthias Maier [Mon, 25 Nov 2019 16:09:59 +0000 (10:09 -0600)]
Merge pull request #9090 from tjhei/doc_report_where

make target documentation report location

4 years agoMerge pull request #9092 from drwells/fix-typo
Timo Heister [Mon, 25 Nov 2019 16:03:15 +0000 (11:03 -0500)]
Merge pull request #9092 from drwells/fix-typo

Fix typo (Genreal -> General)

4 years agoMerge pull request #9089 from tjhei/doc_cite_step_55
David Wells [Mon, 25 Nov 2019 15:45:16 +0000 (10:45 -0500)]
Merge pull request #9089 from tjhei/doc_cite_step_55

step-55: doc update, add citation

4 years agoFix typo (Genreal -> General) 9092/head
David Wells [Mon, 25 Nov 2019 15:06:54 +0000 (10:06 -0500)]
Fix typo (Genreal -> General)

4 years agoREADME.md: display build status
Timo Heister [Mon, 25 Nov 2019 14:06:59 +0000 (09:06 -0500)]
README.md: display build status

4 years agoMerge pull request #8999 from sophy1029/step-61
Martin Kronbichler [Mon, 25 Nov 2019 09:52:37 +0000 (10:52 +0100)]
Merge pull request #8999 from sophy1029/step-61

Step-61 Use FE_DGRT instead of FE_RT

4 years agoMerge pull request #9086 from masterleinad/minor_improvements_2
Martin Kronbichler [Mon, 25 Nov 2019 09:29:48 +0000 (10:29 +0100)]
Merge pull request #9086 from masterleinad/minor_improvements_2

Minor consistency improvements in tensor.h

4 years agoMerge pull request #9087 from masterleinad/restrict_mpi_tests
Daniel Arndt [Mon, 25 Nov 2019 06:10:00 +0000 (01:10 -0500)]
Merge pull request #9087 from masterleinad/restrict_mpi_tests

Restrict some MPI tests requiring p4est

4 years agoAdd comment 9088/head
Daniel Arndt [Mon, 25 Nov 2019 03:21:05 +0000 (22:21 -0500)]
Add comment

4 years agoMerge pull request #9032 from peterrum/dict_generalize
Timo Heister [Mon, 25 Nov 2019 03:16:56 +0000 (22:16 -0500)]
Merge pull request #9032 from peterrum/dict_generalize

Generalize ComputeIndexOwner::Dictionary

4 years agomake target documentation report location 9090/head
Timo Heister [Sun, 24 Nov 2019 20:59:47 +0000 (15:59 -0500)]
make target documentation report location

I am repeatedly struggling to find the correct .html file to open after
running "make documentation". Fix this by printing the absolute path to
the index.html to the screen.

4 years agostep-55: doc update, add citation 9089/head
Timo Heister [Sun, 24 Nov 2019 20:49:47 +0000 (15:49 -0500)]
step-55: doc update, add citation

4 years agoMerge pull request #9085 from masterleinad/minor_improvements_1
David Wells [Sun, 24 Nov 2019 18:27:36 +0000 (13:27 -0500)]
Merge pull request #9085 from masterleinad/minor_improvements_1

Avoid C-style workaround in DataOutBase

4 years agoSuppress warning in python-bindings
Daniel Arndt [Sun, 24 Nov 2019 14:58:51 +0000 (09:58 -0500)]
Suppress warning in python-bindings

4 years agoRestrict some MPI tests requiring p4est 9087/head
Daniel Arndt [Sun, 24 Nov 2019 14:15:02 +0000 (09:15 -0500)]
Restrict some MPI tests requiring p4est

4 years agoMinor consistency improvements in tensor.h 9086/head
Daniel Arndt [Sat, 23 Nov 2019 20:19:33 +0000 (15:19 -0500)]
Minor consistency improvements in tensor.h

4 years agoAvoid C-style workaround in DataOutBase 9085/head
Daniel Arndt [Sat, 23 Nov 2019 20:18:58 +0000 (15:18 -0500)]
Avoid C-style workaround in DataOutBase

4 years agoMerge pull request #9082 from rezarastak/generic_block_sparse_matrix
Daniel Arndt [Sat, 23 Nov 2019 05:27:27 +0000 (00:27 -0500)]
Merge pull request #9082 from rezarastak/generic_block_sparse_matrix

typedef LinearAlgebraDealII::BlockSparseMatrix is defined


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