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dealii.git
4 years agoMerge pull request #9966 from bangerth/58
Timo Heister [Mon, 27 Apr 2020 14:20:32 +0000 (10:20 -0400)]
Merge pull request #9966 from bangerth/58

Fix two formulas in step-58.

4 years agoFix two formulas in step-58. 9966/head
Wolfgang Bangerth [Mon, 27 Apr 2020 14:09:00 +0000 (08:09 -0600)]
Fix two formulas in step-58.

4 years agoMerge pull request #9938 from rezarastak/remove_const_private_members
Daniel Arndt [Mon, 27 Apr 2020 02:08:51 +0000 (22:08 -0400)]
Merge pull request #9938 from rezarastak/remove_const_private_members

4 years agoMerge pull request #9963 from tjhei/test_tbb_lambda
Daniel Arndt [Mon, 27 Apr 2020 02:08:19 +0000 (22:08 -0400)]
Merge pull request #9963 from tjhei/test_tbb_lambda

4 years agoMerge pull request #9962 from peterrum/simplify_update_number_cache
Daniel Arndt [Sun, 26 Apr 2020 23:36:11 +0000 (19:36 -0400)]
Merge pull request #9962 from peterrum/simplify_update_number_cache

4 years agoMerge pull request #9892 from bangerth/step-58
Daniel Arndt [Sun, 26 Apr 2020 23:31:17 +0000 (19:31 -0400)]
Merge pull request #9892 from bangerth/step-58

4 years agoremove a std::bind by lambda 9963/head
Timo Heister [Sun, 26 Apr 2020 23:16:40 +0000 (19:16 -0400)]
remove a std::bind by lambda

part of #9930

4 years agoAdd a changelog entry. 9892/head
Wolfgang Bangerth [Sun, 26 Apr 2020 21:51:31 +0000 (15:51 -0600)]
Add a changelog entry.

4 years agoLeave references to step-58.
Wolfgang Bangerth [Sun, 26 Apr 2020 21:51:59 +0000 (15:51 -0600)]
Leave references to step-58.

4 years agoWrite the code for step-58.
Wolfgang Bangerth [Sun, 26 Apr 2020 21:51:15 +0000 (15:51 -0600)]
Write the code for step-58.

4 years agoWrite the results section of step-58.
Wolfgang Bangerth [Sun, 26 Apr 2020 21:51:01 +0000 (15:51 -0600)]
Write the results section of step-58.

4 years agoWrite the introduction of step-58.
Wolfgang Bangerth [Sun, 26 Apr 2020 21:50:45 +0000 (15:50 -0600)]
Write the introduction of step-58.

4 years agoProvide the infrastructure files for step-58.
Wolfgang Bangerth [Sun, 26 Apr 2020 21:50:24 +0000 (15:50 -0600)]
Provide the infrastructure files for step-58.

4 years agoMerge pull request #9951 from dougshidong/lin_op_trilinos_dealiivector
Martin Kronbichler [Sun, 26 Apr 2020 16:50:25 +0000 (18:50 +0200)]
Merge pull request #9951 from dougshidong/lin_op_trilinos_dealiivector

Allow LinOp<LA::dist::Vector>(TrilinosMatrix).

4 years agoSimplify parallel::TriangulationBase::update_number_cache 9962/head
Peter Munch [Sun, 26 Apr 2020 13:48:45 +0000 (15:48 +0200)]
Simplify parallel::TriangulationBase::update_number_cache

4 years agoMerge pull request #9944 from peterrum/compute_vertices_with_ghost_neighbors_follow_up
Martin Kronbichler [Sun, 26 Apr 2020 05:38:16 +0000 (07:38 +0200)]
Merge pull request #9944 from peterrum/compute_vertices_with_ghost_neighbors_follow_up

Create GridTools::compute_vertices_with_ghost_neighbors()

4 years agoMerge pull request #9958 from peterrum/pdt_remove_1D_hack
Martin Kronbichler [Sun, 26 Apr 2020 05:37:51 +0000 (07:37 +0200)]
Merge pull request #9958 from peterrum/pdt_remove_1D_hack

Remove 1D hack from p:d:t

4 years agoMerge pull request #9960 from masterleinad/fix_trilinos_block_reinit
Martin Kronbichler [Sun, 26 Apr 2020 05:37:04 +0000 (07:37 +0200)]
Merge pull request #9960 from masterleinad/fix_trilinos_block_reinit

Fix calling TrilinosWrappers::BlockSparseMatrix::reinit with BlockSparseMatrix

4 years agoAllow LinOp<LA::dist::Vector>(TrilinosMatrix). 9951/head
Doug Shi-Dong [Fri, 24 Apr 2020 17:12:52 +0000 (13:12 -0400)]
Allow LinOp<LA::dist::Vector>(TrilinosMatrix).

4 years agoMerge pull request #9936 from rezarastak/improve_booleans
Daniel Arndt [Sat, 25 Apr 2020 19:20:49 +0000 (15:20 -0400)]
Merge pull request #9936 from rezarastak/improve_booleans

4 years agoMerge pull request #9959 from peterrum/doxygen_copy_new_triangulation_to_p4est
Daniel Arndt [Sat, 25 Apr 2020 19:07:10 +0000 (15:07 -0400)]
Merge pull request #9959 from peterrum/doxygen_copy_new_triangulation_to_p4est

4 years agoMerge pull request #9956 from jppelteret/doc_boost_serialization_split_member
Jean-Paul Pelteret [Sat, 25 Apr 2020 17:54:08 +0000 (19:54 +0200)]
Merge pull request #9956 from jppelteret/doc_boost_serialization_split_member

Add documentation for hidden serialize() functions

4 years agoFix calling TrilinosWrappers::BlockSparseMatrix::reinit with BlockSparseMatrix 9960/head
Daniel Arndt [Sat, 25 Apr 2020 17:05:43 +0000 (13:05 -0400)]
Fix calling TrilinosWrappers::BlockSparseMatrix::reinit with BlockSparseMatrix

4 years agoFix doxygen appearance copy_new_triangulation_to_p4est 9959/head
Peter Munch [Sat, 25 Apr 2020 16:55:10 +0000 (18:55 +0200)]
Fix doxygen appearance copy_new_triangulation_to_p4est

4 years agoRemove 1D hack from p:d:t 9958/head
Peter Munch [Sat, 25 Apr 2020 15:44:45 +0000 (17:44 +0200)]
Remove 1D hack from p:d:t

4 years agoMerge pull request #9920 from masterleinad/remove_doc_doxygen_tutorial
Jean-Paul Pelteret [Sat, 25 Apr 2020 13:03:16 +0000 (15:03 +0200)]
Merge pull request #9920 from masterleinad/remove_doc_doxygen_tutorial

Remove doc/doxygen/tutorial

4 years agoAdd documentation for hidden serialize() functions 9956/head
Jean-Paul Pelteret [Sat, 25 Apr 2020 12:39:58 +0000 (14:39 +0200)]
Add documentation for hidden serialize() functions

4 years agoMerge pull request #9955 from masterleinad/remove_remaining_deprecations
Daniel Arndt [Sat, 25 Apr 2020 04:12:58 +0000 (00:12 -0400)]
Merge pull request #9955 from masterleinad/remove_remaining_deprecations

4 years agoMerge pull request #9952 from masterleinad/remove_range_partitioner
Wolfgang Bangerth [Sat, 25 Apr 2020 02:44:05 +0000 (04:44 +0200)]
Merge pull request #9952 from masterleinad/remove_range_partitioner

Remove domain_partitioner and range_partitioner from TrilinosWrappers

4 years agoMerge pull request #9949 from peterrum/pst_update_number_cache_private
Wolfgang Bangerth [Sat, 25 Apr 2020 02:20:16 +0000 (04:20 +0200)]
Merge pull request #9949 from peterrum/pst_update_number_cache_private

Make parallel::shared::Triangulation::update_number_cache private

4 years agoRemove the last deprecations 9955/head
Daniel Arndt [Fri, 24 Apr 2020 23:13:54 +0000 (19:13 -0400)]
Remove the last deprecations

4 years agoMerge pull request #9953 from kronbichler/fix_another_test
Daniel Arndt [Fri, 24 Apr 2020 23:10:58 +0000 (19:10 -0400)]
Merge pull request #9953 from kronbichler/fix_another_test

4 years agoImprove calculating boolean values 9936/head
Reza Rastak [Wed, 22 Apr 2020 02:49:43 +0000 (19:49 -0700)]
Improve calculating boolean values

4 years agoInclude ComponentMask in vector_tools_interpolate.h 9953/head
Martin Kronbichler [Fri, 24 Apr 2020 18:15:01 +0000 (20:15 +0200)]
Include ComponentMask in vector_tools_interpolate.h

4 years agoMerge pull request #9925 from peterrum/affine_constraints_instantiation
Martin Kronbichler [Fri, 24 Apr 2020 18:09:08 +0000 (20:09 +0200)]
Merge pull request #9925 from peterrum/affine_constraints_instantiation

Instantiate AffineConstraints::distribute_local_to_global

4 years agoMerge pull request #9943 from masterleinad/remove_trilinos_constructors
Martin Kronbichler [Fri, 24 Apr 2020 18:05:27 +0000 (20:05 +0200)]
Merge pull request #9943 from masterleinad/remove_trilinos_constructors

Remove deprecated TrilinosWrappers constructors and reinitializations

4 years agoRemove domain_partitioner and range_partitioner from TrilinosWrappers 9952/head
Daniel Arndt [Fri, 24 Apr 2020 17:11:40 +0000 (13:11 -0400)]
Remove domain_partitioner and range_partitioner from TrilinosWrappers

4 years agoMerge pull request #9946 from kronbichler/fix_tests-1
Daniel Arndt [Fri, 24 Apr 2020 12:50:20 +0000 (08:50 -0400)]
Merge pull request #9946 from kronbichler/fix_tests-1

4 years agoMake parallel::shared::Trinagulation::update_number_cache private 9949/head
Peter Munch [Fri, 24 Apr 2020 10:46:08 +0000 (12:46 +0200)]
Make parallel::shared::Trinagulation::update_number_cache private

4 years agoDo not run MF loop in parallel 9946/head
Martin Kronbichler [Fri, 24 Apr 2020 08:08:15 +0000 (10:08 +0200)]
Do not run MF loop in parallel

4 years agoInclude vector headers
Martin Kronbichler [Fri, 24 Apr 2020 08:07:39 +0000 (10:07 +0200)]
Include vector headers

4 years agoAdd some std headers for minimal bundled case
Martin Kronbichler [Fri, 24 Apr 2020 08:07:20 +0000 (10:07 +0200)]
Add some std headers for minimal bundled case

4 years agoMerge pull request #9929 from masterleinad/split_vectortools
Martin Kronbichler [Thu, 23 Apr 2020 21:57:17 +0000 (23:57 +0200)]
Merge pull request #9929 from masterleinad/split_vectortools

Split VectorTools up

4 years agoconst is removed from private member variables of DiscreteTime 9938/head
Reza Rastak [Wed, 22 Apr 2020 04:22:06 +0000 (21:22 -0700)]
const is removed from private member variables of DiscreteTime

4 years agoMerge pull request #9898 from bangerth/52-1
Daniel Arndt [Thu, 23 Apr 2020 16:20:21 +0000 (12:20 -0400)]
Merge pull request #9898 from bangerth/52-1

4 years agoMerge pull request #9748 from rezarastak/modify_step_21
Wolfgang Bangerth [Thu, 23 Apr 2020 15:37:23 +0000 (17:37 +0200)]
Merge pull request #9748 from rezarastak/modify_step_21

Improve DiscreteTime and use it in step 21

4 years agoMerge pull request #9919 from peterrum/OutputStyle
Luca Heltai [Thu, 23 Apr 2020 10:00:08 +0000 (12:00 +0200)]
Merge pull request #9919 from peterrum/OutputStyle

Extend OutputStyle

4 years agoMerge pull request #9941 from dangars/petsc_tvmult_changelog
Peter Munch [Thu, 23 Apr 2020 09:30:36 +0000 (11:30 +0200)]
Merge pull request #9941 from dangars/petsc_tvmult_changelog

Add changelog entry for "Add Tvmult to Petsc PreconditionJacobi"

4 years agoCreate GridTools::compute_vertices_with_ghost_neighbors() 9944/head
Peter Munch [Thu, 23 Apr 2020 06:45:25 +0000 (08:45 +0200)]
Create GridTools::compute_vertices_with_ghost_neighbors()

4 years agoAdd changelog entry 9941/head
Daniel Garcia-Sanchez [Thu, 23 Apr 2020 05:36:43 +0000 (07:36 +0200)]
Add changelog entry

This adds a changelog entry for the commit
"Add Tvmult to PETSc PreconditionerBase" c29092defe521e2093f83efdfb653253baada809

4 years agoChangelog entry 9943/head
Daniel Arndt [Thu, 23 Apr 2020 03:04:26 +0000 (23:04 -0400)]
Changelog entry

4 years agoRemove deprecated TrilinosWrappers constructors and reinitializations
Daniel Arndt [Thu, 23 Apr 2020 02:56:01 +0000 (22:56 -0400)]
Remove deprecated TrilinosWrappers constructors and reinitializations

4 years agoset_next_step_size is renamed to set_desired_next_step_size 9748/head
Reza Rastak [Sun, 19 Apr 2020 06:25:52 +0000 (23:25 -0700)]
set_next_step_size is renamed to set_desired_next_step_size

4 years agochangelog added for improvements to step-21
Reza Rastak [Fri, 27 Mar 2020 04:35:28 +0000 (21:35 -0700)]
changelog added for improvements to step-21

4 years agoStep-21 modified to use DiscreteTime
Reza Rastak [Thu, 26 Mar 2020 04:54:23 +0000 (21:54 -0700)]
Step-21 modified to use DiscreteTime

4 years agoNew const member functions added to DiscreteTime
Reza Rastak [Thu, 26 Mar 2020 05:52:43 +0000 (22:52 -0700)]
New const member functions added to DiscreteTime

4 years agoInstantiate AffineConstraints::distribute_local_to_global for TrilinosWrappers::Spars... 9925/head
Peter Munch [Sat, 18 Apr 2020 21:37:18 +0000 (23:37 +0200)]
Instantiate AffineConstraints::distribute_local_to_global for TrilinosWrappers::SparseMatrix and LinearAlgebra::distributed::Vector

4 years agoExtend OutputStyle 9919/head
Peter Munch [Fri, 17 Apr 2020 19:49:43 +0000 (21:49 +0200)]
Extend OutputStyle

4 years agoMerge pull request #9934 from bangerth/delete
Daniel Arndt [Wed, 22 Apr 2020 16:31:52 +0000 (12:31 -0400)]
Merge pull request #9934 from bangerth/delete

4 years agoMerge pull request #9940 from bangerth/typo
Timo Heister [Wed, 22 Apr 2020 15:28:10 +0000 (11:28 -0400)]
Merge pull request #9940 from bangerth/typo

Fix a typo.

4 years agoFix a typo. 9940/head
Wolfgang Bangerth [Wed, 22 Apr 2020 15:07:43 +0000 (09:07 -0600)]
Fix a typo.

4 years agoExplicitly =delete copy operators for TaskDescriptor. 9934/head
Wolfgang Bangerth [Tue, 21 Apr 2020 15:49:03 +0000 (09:49 -0600)]
Explicitly =delete copy operators for TaskDescriptor.

4 years agoUse smaller vector_tools files 9929/head
Daniel Arndt [Tue, 21 Apr 2020 23:04:31 +0000 (19:04 -0400)]
Use smaller vector_tools files

4 years agoSplit vector_tools.h
Daniel Arndt [Mon, 20 Apr 2020 16:35:42 +0000 (12:35 -0400)]
Split vector_tools.h

4 years agoSplit vector_tools.templates.h
Daniel Arndt [Sun, 19 Apr 2020 16:50:21 +0000 (12:50 -0400)]
Split vector_tools.templates.h

4 years agoFix tests
Daniel Arndt [Tue, 21 Apr 2020 21:30:15 +0000 (17:30 -0400)]
Fix tests

4 years agoInstantiate boundary functions for dim<spacedim
Daniel Arndt [Tue, 21 Apr 2020 22:41:05 +0000 (18:41 -0400)]
Instantiate boundary functions for dim<spacedim

4 years agoMerge pull request #9932 from tjhei/tidy_clang10fixes
Wolfgang Bangerth [Tue, 21 Apr 2020 17:33:09 +0000 (19:33 +0200)]
Merge pull request #9932 from tjhei/tidy_clang10fixes

small clang-tidy fix

4 years agosmall clang-tidy fix 9932/head
Timo Heister [Tue, 21 Apr 2020 15:02:54 +0000 (11:02 -0400)]
small clang-tidy fix

4 years agoMerge pull request #9924 from drwells/improve-compilation-times
Timo Heister [Mon, 20 Apr 2020 22:25:50 +0000 (18:25 -0400)]
Merge pull request #9924 from drwells/improve-compilation-times

Improve compilation times

4 years agoMerge pull request #9927 from rezarastak/clang_tidy_enhance
Timo Heister [Mon, 20 Apr 2020 17:19:48 +0000 (13:19 -0400)]
Merge pull request #9927 from rezarastak/clang_tidy_enhance

Clang tidy 9.0 fixes

4 years agoMerge pull request #9912 from tjhei/doc_workload
Wolfgang Bangerth [Mon, 20 Apr 2020 16:23:23 +0000 (18:23 +0200)]
Merge pull request #9912 from tjhei/doc_workload

documentation: workload_imbalance

4 years agoMerge pull request #9926 from peterrum/tutorials_default
Daniel Arndt [Mon, 20 Apr 2020 15:52:52 +0000 (11:52 -0400)]
Merge pull request #9926 from peterrum/tutorials_default

4 years agoMerge pull request #9922 from masterleinad/build_documentation
Timo Heister [Mon, 20 Apr 2020 15:13:40 +0000 (11:13 -0400)]
Merge pull request #9922 from masterleinad/build_documentation

Build and check documentation in CI

4 years agoremove some checks in clang-tidy config 9927/head
Reza Rastak [Mon, 20 Apr 2020 04:15:47 +0000 (21:15 -0700)]
remove some checks in clang-tidy config

4 years agoseveral improvements done based on clang-tidy 9.0 suggestions
Reza Rastak [Mon, 20 Apr 2020 04:09:36 +0000 (21:09 -0700)]
several improvements done based on clang-tidy 9.0 suggestions

4 years agoRemove most <> from tutorials 9926/head
Peter Munch [Sat, 18 Apr 2020 21:54:53 +0000 (23:54 +0200)]
Remove most <> from tutorials

4 years agoInline code examples 9920/head
Daniel Arndt [Sun, 19 Apr 2020 19:51:26 +0000 (15:51 -0400)]
Inline code examples

4 years agodocumentation: workload_imbalance and assert valid 9912/head
Timo Heister [Thu, 16 Apr 2020 21:45:52 +0000 (17:45 -0400)]
documentation: workload_imbalance and assert valid

4 years agoSplit grid_tools.cc into two instantiation files. 9924/head
David Wells [Sat, 18 Apr 2020 20:29:12 +0000 (16:29 -0400)]
Split grid_tools.cc into two instantiation files.

4 years agoMove some non-template functions into a new file.
David Wells [Sat, 18 Apr 2020 20:08:37 +0000 (16:08 -0400)]
Move some non-template functions into a new file.

This will let us split up grid_tools.cc with SPLIT_INSTANTIATIONS_COUNT
in the next step.

4 years agoTweak the settings for unity builds slightly.
David Wells [Sat, 18 Apr 2020 16:57:06 +0000 (12:57 -0400)]
Tweak the settings for unity builds slightly.

These two unity files had large (3.4 GB for fe/unity_3.cc, 5.4 GB for
grid/unity_0.cc) maximum resident set sizes.

4 years agoBuild documentation 9922/head
Daniel Arndt [Sat, 18 Apr 2020 01:58:35 +0000 (21:58 -0400)]
Build documentation

4 years agoMerge pull request #9880 from masterleinad/fix_doxygen
Wolfgang Bangerth [Sun, 19 Apr 2020 01:29:33 +0000 (03:29 +0200)]
Merge pull request #9880 from masterleinad/fix_doxygen

Avoid doxygen warnings

4 years agoMerge pull request #9915 from tjhei/move_is_multilevel_hierarchy
Daniel Arndt [Sun, 19 Apr 2020 00:47:25 +0000 (20:47 -0400)]
Merge pull request #9915 from tjhei/move_is_multilevel_hierarchy

4 years agomove is_multilevel_hierarchy_constructed() up 9915/head
Timo Heister [Fri, 17 Apr 2020 14:06:17 +0000 (10:06 -0400)]
move is_multilevel_hierarchy_constructed() up

Move is_multilevel_hierarchy_constructed() from
DistributedTriangulationBase to parallel::TriangulationBase

4 years agoMerge pull request #9921 from kronbichler/fix_parallel_vector_16_test
Daniel Arndt [Sat, 18 Apr 2020 13:11:39 +0000 (09:11 -0400)]
Merge pull request #9921 from kronbichler/fix_parallel_vector_16_test

4 years agoMerge pull request #9918 from masterleinad/remove_deprecated_ratio
Martin Kronbichler [Sat, 18 Apr 2020 09:45:15 +0000 (11:45 +0200)]
Merge pull request #9918 from masterleinad/remove_deprecated_ratio

Remove deprecated ratio member functions

4 years agoFix test mpi/parallel_vector_16 9921/head
Martin Kronbichler [Sat, 18 Apr 2020 09:39:47 +0000 (11:39 +0200)]
Fix test mpi/parallel_vector_16

4 years agoRemove doc/doxygen/tutorial
Daniel Arndt [Fri, 17 Apr 2020 23:17:08 +0000 (19:17 -0400)]
Remove doc/doxygen/tutorial

4 years agoMerge pull request #9916 from drwells/improve-step-8
Daniel Arndt [Fri, 17 Apr 2020 23:12:18 +0000 (19:12 -0400)]
Merge pull request #9916 from drwells/improve-step-8

4 years agohotfix step-50 9880/head
Daniel Arndt [Fri, 17 Apr 2020 22:12:10 +0000 (18:12 -0400)]
hotfix step-50

4 years agoFix source
Daniel Arndt [Fri, 17 Apr 2020 21:46:05 +0000 (17:46 -0400)]
Fix source

4 years agoFix include
Daniel Arndt [Fri, 17 Apr 2020 21:12:57 +0000 (17:12 -0400)]
Fix include

4 years agoFix examples
Daniel Arndt [Fri, 17 Apr 2020 21:12:19 +0000 (17:12 -0400)]
Fix examples

4 years agoFix doc
Daniel Arndt [Fri, 17 Apr 2020 21:12:00 +0000 (17:12 -0400)]
Fix doc

4 years agoMerge pull request #9917 from nfehn/step-35
Wolfgang Bangerth [Fri, 17 Apr 2020 16:38:01 +0000 (18:38 +0200)]
Merge pull request #9917 from nfehn/step-35

improve documentation of step-35

4 years agoFix indentation
Daniel Arndt [Mon, 13 Apr 2020 00:42:57 +0000 (20:42 -0400)]
Fix indentation

4 years agoEnable zlib again for doxygen
Daniel Arndt [Mon, 13 Apr 2020 00:40:59 +0000 (20:40 -0400)]
Enable zlib again for doxygen

4 years agoUpdate doc/doxygen/options.dox.in
Daniel Arndt [Mon, 13 Apr 2020 00:38:59 +0000 (20:38 -0400)]
Update doc/doxygen/options.dox.in

Co-Authored-By: Timo Heister <timo.heister@gmail.com>

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