https://gitweb.dealii.org/

Matthias Maier [Sun, 24 Mar 2013 09:51:22 +0000 (09:51 +0000)]

CMake: Bugfix. Make bundled tbb compile again

git-svn-id: https://svn.dealii.org/trunk@29010 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sun, 24 Mar 2013 09:17:07 +0000 (09:17 +0000)]

CMake: Bugfix, switch the order of includes...

git-svn-id: https://svn.dealii.org/trunk@29009 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sun, 24 Mar 2013 01:34:48 +0000 (01:34 +0000)]

CMake: Bugfix, add SHLIBLD and SHLIBFLAGS back to Make.global_options

git-svn-id: https://svn.dealii.org/trunk@29008 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sun, 24 Mar 2013 01:22:32 +0000 (01:22 +0000)]

CMake: Make includes a bit more robust

git-svn-id: https://svn.dealii.org/trunk@29007 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sun, 24 Mar 2013 00:33:12 +0000 (00:33 +0000)]

CMake: Bugfix

git-svn-id: https://svn.dealii.org/trunk@29006 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sun, 24 Mar 2013 00:09:26 +0000 (00:09 +0000)]

Remove forgotten obsolete file

git-svn-id: https://svn.dealii.org/trunk@29005 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 23 Mar 2013 23:57:36 +0000 (23:57 +0000)]

CMake: Finish CMake documentation

git-svn-id: https://svn.dealii.org/trunk@29004 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 23 Mar 2013 23:57:19 +0000 (23:57 +0000)]

CMake: Bugfixes in configure_boost.cmake

git-svn-id: https://svn.dealii.org/trunk@29003 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 23 Mar 2013 23:57:19 +0000 (23:57 +0000)]

CMake: Remove this little hack

git-svn-id: https://svn.dealii.org/trunk@29002 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 23 Mar 2013 23:57:18 +0000 (23:57 +0000)]

CMake: Print external libraries in the summary

git-svn-id: https://svn.dealii.org/trunk@29001 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 23 Mar 2013 23:57:17 +0000 (23:57 +0000)]

CMake: Fix a TODO in FindTBB.cmake

git-svn-id: https://svn.dealii.org/trunk@29000 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 23 Mar 2013 23:57:16 +0000 (23:57 +0000)]

CMake: Some more documentation and code cleanup

git-svn-id: https://svn.dealii.org/trunk@28999 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Sat, 23 Mar 2013 23:57:16 +0000 (23:57 +0000)]

Run some selected tests in the build_tests

git-svn-id: https://svn.dealii.org/trunk@28998 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 22 Mar 2013 21:20:13 +0000 (21:20 +0000)]

benchmark: interactive plot

git-svn-id: https://svn.dealii.org/trunk@28995 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Fri, 22 Mar 2013 19:41:17 +0000 (19:41 +0000)]

Document the use configuration of BLAS and LAPACK better.

git-svn-id: https://svn.dealii.org/trunk@28994 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Fri, 22 Mar 2013 15:52:10 +0000 (15:52 +0000)]

Function to instruct SLEPc to exploit symmetry operations.

git-svn-id: https://svn.dealii.org/trunk@28990 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Fri, 22 Mar 2013 14:45:26 +0000 (14:45 +0000)]

Remove 64BIT directive in PETScWrappers. PetscErrorCode is always right.

git-svn-id: https://svn.dealii.org/trunk@28987 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Fri, 22 Mar 2013 13:36:35 +0000 (13:36 +0000)]

produce reproducible output

git-svn-id: https://svn.dealii.org/trunk@28985 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Fri, 22 Mar 2013 13:35:11 +0000 (13:35 +0000)]

fix two more locations of double to int and remove date from output

git-svn-id: https://svn.dealii.org/trunk@28984 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 22 Mar 2013 02:58:01 +0000 (02:58 +0000)]

fix warning

git-svn-id: https://svn.dealii.org/trunk@28980 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Fri, 22 Mar 2013 02:55:41 +0000 (02:55 +0000)]

fix warning

git-svn-id: https://svn.dealii.org/trunk@28979 0785d39b-7218-0410-832d-ea1e28bc413d

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Eric Heien [Thu, 21 Mar 2013 20:43:30 +0000 (20:43 +0000)]

Bug fix for HDF5 output, now properly handles processors with 0 patches

git-svn-id: https://svn.dealii.org/trunk@28978 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Thu, 21 Mar 2013 18:43:04 +0000 (18:43 +0000)]

add newline at end of file

git-svn-id: https://svn.dealii.org/trunk@28977 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Thu, 21 Mar 2013 17:43:29 +0000 (17:43 +0000)]

step-42: do not allocate a fat matrix we are not going to use

git-svn-id: https://svn.dealii.org/trunk@28976 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Thu, 21 Mar 2013 17:37:54 +0000 (17:37 +0000)]

step-42: fix formatting and optional command line parameter

git-svn-id: https://svn.dealii.org/trunk@28975 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Thu, 21 Mar 2013 17:26:12 +0000 (17:26 +0000)]

fix typo

git-svn-id: https://svn.dealii.org/trunk@28974 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Thu, 21 Mar 2013 15:19:37 +0000 (15:19 +0000)]

try to fix warnings without seeing them

git-svn-id: https://svn.dealii.org/trunk@28971 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 21 Mar 2013 14:26:25 +0000 (14:26 +0000)]

Make compile again.

git-svn-id: https://svn.dealii.org/trunk@28970 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Thu, 21 Mar 2013 14:01:11 +0000 (14:01 +0000)]

change in IterativeInverse

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Guido Kanschat [Thu, 21 Mar 2013 13:39:10 +0000 (13:39 +0000)]

instantiate DoFInfo for long double

git-svn-id: https://svn.dealii.org/trunk@28968 0785d39b-7218-0410-832d-ea1e28bc413d

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Christian Wuelker [Thu, 21 Mar 2013 13:31:44 +0000 (13:31 +0000)]

Test fuer write_svg

git-svn-id: https://svn.dealii.org/trunk@28967 0785d39b-7218-0410-832d-ea1e28bc413d

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Christian Wuelker [Thu, 21 Mar 2013 13:27:38 +0000 (13:27 +0000)]

Added GridOut::write_svg

git-svn-id: https://svn.dealii.org/trunk@28966 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 20 Mar 2013 23:27:52 +0000 (23:27 +0000)]

Augment documentation.

git-svn-id: https://svn.dealii.org/trunk@28964 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 20 Mar 2013 17:02:43 +0000 (17:02 +0000)]

fix bug in TimerOutput introduced earlier

git-svn-id: https://svn.dealii.org/trunk@28959 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 20 Mar 2013 15:23:07 +0000 (15:23 +0000)]

use new TimerOutput features

git-svn-id: https://svn.dealii.org/trunk@28958 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 20 Mar 2013 15:22:34 +0000 (15:22 +0000)]

more TimerOutput changes

git-svn-id: https://svn.dealii.org/trunk@28957 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 20 Mar 2013 15:16:03 +0000 (15:16 +0000)]

record changes made

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Timo Heister [Wed, 20 Mar 2013 15:13:57 +0000 (15:13 +0000)]

add TimerOutput::reset()

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Timo Heister [Wed, 20 Mar 2013 15:13:13 +0000 (15:13 +0000)]

step-42: update timing stuff

git-svn-id: https://svn.dealii.org/trunk@28954 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 20 Mar 2013 12:25:21 +0000 (12:25 +0000)]

More cleanups.

git-svn-id: https://svn.dealii.org/trunk@28953 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 20 Mar 2013 04:00:05 +0000 (04:00 +0000)]

More standardization.

git-svn-id: https://svn.dealii.org/trunk@28952 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 20 Mar 2013 03:58:20 +0000 (03:58 +0000)]

More renaming.

git-svn-id: https://svn.dealii.org/trunk@28951 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 20 Mar 2013 03:56:14 +0000 (03:56 +0000)]

Simplify process.

git-svn-id: https://svn.dealii.org/trunk@28950 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 20 Mar 2013 03:38:11 +0000 (03:38 +0000)]

Use standard names.

git-svn-id: https://svn.dealii.org/trunk@28949 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 20 Mar 2013 03:20:45 +0000 (03:20 +0000)]

Use SSOR as preconditioner.

git-svn-id: https://svn.dealii.org/trunk@28948 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 20 Mar 2013 02:03:51 +0000 (02:03 +0000)]

Link to the FAQ page to provide a better explanation of what the ExcInUse
error message actually means. I think every single one of my students has hit
this this semester and not a single one has found the solution herself).

git-svn-id: https://svn.dealii.org/trunk@28947 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Tue, 19 Mar 2013 14:35:42 +0000 (14:35 +0000)]

step-42: remove some timingoutput

git-svn-id: https://svn.dealii.org/trunk@28943 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 19 Mar 2013 12:15:51 +0000 (12:15 +0000)]

Update documentation slightly.

git-svn-id: https://svn.dealii.org/trunk@28942 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 19 Mar 2013 12:08:31 +0000 (12:08 +0000)]

Write one section.

git-svn-id: https://svn.dealii.org/trunk@28941 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 19 Mar 2013 03:50:23 +0000 (03:50 +0000)]

Switch back to a more interesting case.

git-svn-id: https://svn.dealii.org/trunk@28940 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 19 Mar 2013 03:43:39 +0000 (03:43 +0000)]

Verify that the solution is correct.

git-svn-id: https://svn.dealii.org/trunk@28939 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 19 Mar 2013 02:32:21 +0000 (02:32 +0000)]

One more place that needed to be made to compile.

git-svn-id: https://svn.dealii.org/trunk@28938 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Mon, 18 Mar 2013 23:27:00 +0000 (23:27 +0000)]

fix typos in comments

git-svn-id: https://svn.dealii.org/trunk@28937 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 18 Mar 2013 23:19:15 +0000 (23:19 +0000)]

Make more places compile with standard C++98/03.

git-svn-id: https://svn.dealii.org/trunk@28936 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Mon, 18 Mar 2013 23:11:22 +0000 (23:11 +0000)]

Add a heat equation solver. Remove the file with surface points that belongs to the previous incarnation of step-26 that was never finished.

git-svn-id: https://svn.dealii.org/trunk@28935 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Mon, 18 Mar 2013 22:11:53 +0000 (22:11 +0000)]

fix compilation on old gcc

git-svn-id: https://svn.dealii.org/trunk@28934 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Mon, 18 Mar 2013 20:48:12 +0000 (20:48 +0000)]

update step-42 to not need std::unique_ptr

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Wolfgang Bangerth [Mon, 18 Mar 2013 17:54:11 +0000 (17:54 +0000)]

Fix include paths.

git-svn-id: https://svn.dealii.org/trunk@28932 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Mon, 18 Mar 2013 14:56:33 +0000 (14:56 +0000)]

support long double

git-svn-id: https://svn.dealii.org/trunk@28931 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Mon, 18 Mar 2013 14:56:11 +0000 (14:56 +0000)]

support mixed accuracy preconditioning

git-svn-id: https://svn.dealii.org/trunk@28930 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Mon, 18 Mar 2013 14:32:11 +0000 (14:32 +0000)]

add MinRes option

git-svn-id: https://svn.dealii.org/trunk@28929 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 17 Mar 2013 17:55:59 +0000 (17:55 +0000)]

Deprecate the function TimeDependent::end_sweep with an argument indicating the number of threads. Introduce a function without an argument and use TBB facilities to make it parallel as the old one was. Actually introduce a first test for the entire TimeDependent stuff.

git-svn-id: https://svn.dealii.org/trunk@28928 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sun, 17 Mar 2013 17:14:01 +0000 (17:14 +0000)]

Give an example of how to use BLAS/LAPACK.

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Wolfgang Bangerth [Sun, 17 Mar 2013 16:16:15 +0000 (16:16 +0000)]

Update output.

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Wolfgang Bangerth [Sun, 17 Mar 2013 16:14:20 +0000 (16:14 +0000)]

Update error message.

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Wolfgang Bangerth [Sun, 17 Mar 2013 16:12:38 +0000 (16:12 +0000)]

Adjust test output.

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Wolfgang Bangerth [Sun, 17 Mar 2013 16:09:23 +0000 (16:09 +0000)]

Update output.

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Wolfgang Bangerth [Sun, 17 Mar 2013 16:02:54 +0000 (16:02 +0000)]

Mention PETSc's optimized mode.

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Wolfgang Bangerth [Sat, 16 Mar 2013 12:30:32 +0000 (12:30 +0000)]

Rename environment variable to DEAL_II_DIFF.

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Wolfgang Bangerth [Sat, 16 Mar 2013 12:28:41 +0000 (12:28 +0000)]

Update. Rename environment variable to DEAL_II_DIFF.

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Wolfgang Bangerth [Sat, 16 Mar 2013 12:14:07 +0000 (12:14 +0000)]

Update.

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Wolfgang Bangerth [Fri, 15 Mar 2013 22:48:53 +0000 (22:48 +0000)]

Adjust output.

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Wolfgang Bangerth [Fri, 15 Mar 2013 20:48:01 +0000 (20:48 +0000)]

Remove code necessary to support PETSc versions prior to 2.2.1. Such old
versions of PETSc have not been supported in a long time.

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Wolfgang Bangerth [Fri, 15 Mar 2013 18:31:03 +0000 (18:31 +0000)]

Allow default construction of FEValuesExtractor objects, but make sure they are then invalid when used.

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Matthias Maier [Fri, 15 Mar 2013 15:18:43 +0000 (15:18 +0000)]

CMake: Minor documentation cleanup

git-svn-id: https://svn.dealii.org/trunk@28912 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Fri, 15 Mar 2013 10:12:46 +0000 (10:12 +0000)]

CMake: Bugfix

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Matthias Maier [Fri, 15 Mar 2013 09:58:19 +0000 (09:58 +0000)]

CMake: Final cleanup for the MPI stuff

git-svn-id: https://svn.dealii.org/trunk@28910 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Fri, 15 Mar 2013 07:09:36 +0000 (07:09 +0000)]

replace stale output

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Matthias Maier [Fri, 15 Mar 2013 00:26:35 +0000 (00:26 +0000)]

CMake: Remove DEAL_II_ALLOW_GENERIC_MPI and handle this with DEAL_II_WITH_MPI directly

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Matthias Maier [Fri, 15 Mar 2013 00:07:36 +0000 (00:07 +0000)]

CMake: Set default to aggressive MPI disabled

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Matthias Maier [Fri, 15 Mar 2013 00:04:58 +0000 (00:04 +0000)]

CMake: Improve compile flag macros, replace "-O0" with "-O1" on Cygwin targets

git-svn-id: https://svn.dealii.org/trunk@28906 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Thu, 14 Mar 2013 22:24:11 +0000 (22:24 +0000)]

local blocks are in DoFInfo now only

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Matthias Maier [Thu, 14 Mar 2013 17:28:32 +0000 (17:28 +0000)]

CMake: Write the second part of the documentation

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Matthias Maier [Thu, 14 Mar 2013 13:15:07 +0000 (13:15 +0000)]

Reorganize the documentation

git-svn-id: https://svn.dealii.org/trunk@28902 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Thu, 14 Mar 2013 13:15:06 +0000 (13:15 +0000)]

Update the documentation

git-svn-id: https://svn.dealii.org/trunk@28901 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Thu, 14 Mar 2013 09:11:37 +0000 (09:11 +0000)]

Remove most instances of PETSC_USE_64BIT_INDICES. PetscInt is always right.

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Toby D. Young [Thu, 14 Mar 2013 09:10:53 +0000 (09:10 +0000)]

Remove most instances of PETSC_USE_64BIT_INDICES. PetscInt is always right.

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Matthias Maier [Thu, 14 Mar 2013 08:07:11 +0000 (08:07 +0000)]

Move some bits of documentation

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Timo Heister [Thu, 14 Mar 2013 02:42:50 +0000 (02:42 +0000)]

try if this output fixes the tester

git-svn-id: https://svn.dealii.org/trunk@28897 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Thu, 14 Mar 2013 02:41:46 +0000 (02:41 +0000)]

fix test

git-svn-id: https://svn.dealii.org/trunk@28896 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Thu, 14 Mar 2013 00:01:54 +0000 (00:01 +0000)]

And disable threading support for Cygwin

git-svn-id: https://svn.dealii.org/trunk@28894 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Wed, 13 Mar 2013 23:47:22 +0000 (23:47 +0000)]

Porting to Windows: Enable thread support for native Windows targets (mingw so far)

git-svn-id: https://svn.dealii.org/trunk@28893 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Wed, 13 Mar 2013 21:38:18 +0000 (21:38 +0000)]

Some structural changes

git-svn-id: https://svn.dealii.org/trunk@28892 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Wed, 13 Mar 2013 20:18:58 +0000 (20:18 +0000)]

Fix missing closing brace.

git-svn-id: https://svn.dealii.org/trunk@28891 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Wed, 13 Mar 2013 20:17:20 +0000 (20:17 +0000)]

Fix offensive formula

git-svn-id: https://svn.dealii.org/trunk@28890 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 13 Mar 2013 16:45:17 +0000 (16:45 +0000)]

remove ignore

git-svn-id: https://svn.dealii.org/trunk@28888 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 13 Mar 2013 16:12:01 +0000 (16:12 +0000)]

remove more ignores

git-svn-id: https://svn.dealii.org/trunk@28887 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 13 Mar 2013 16:08:51 +0000 (16:08 +0000)]

remove some ignores

git-svn-id: https://svn.dealii.org/trunk@28886 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Wed, 13 Mar 2013 16:08:35 +0000 (16:08 +0000)]

add to documentation

git-svn-id: https://svn.dealii.org/trunk@28885 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Wed, 13 Mar 2013 15:50:14 +0000 (15:50 +0000)]

Bump bundled fparser to version 4.5.1 to avoid a duplicate symbol problem

git-svn-id: https://svn.dealii.org/trunk@28884 0785d39b-7218-0410-832d-ea1e28bc413d

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