https://gitweb.dealii.org/ - dealii-svn.git/log

]> https://gitweb.dealii.org/ - dealii-svn.git/log

heister [Wed, 31 Jul 2013 15:01:04 +0000 (15:01 +0000)]

fix SparsityTools::distribute_sparsity_pattern for block systems

git-svn-id: https://svn.dealii.org/trunk@30197 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Wed, 31 Jul 2013 14:31:11 +0000 (14:31 +0000)]

some prm-files

git-svn-id: https://svn.dealii.org/trunk@30196 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Wed, 31 Jul 2013 14:30:00 +0000 (14:30 +0000)]

copied step-42.cc from src/unified

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heister [Wed, 31 Jul 2013 13:41:55 +0000 (13:41 +0000)]

add Oleh to the credits

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heister [Wed, 31 Jul 2013 13:40:09 +0000 (13:40 +0000)]

documentation patch by Oleh Krehel

git-svn-id: https://svn.dealii.org/trunk@30193 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 31 Jul 2013 13:34:45 +0000 (13:34 +0000)]

fix bug in IndexSet

git-svn-id: https://svn.dealii.org/trunk@30192 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Wed, 31 Jul 2013 09:18:29 +0000 (09:18 +0000)]

Checking PETSc-SLEPc compatibility is VERSION_SUBMINOR independent and way to restrictive if not respected. Check MAJOR and MINOR only then go ahead with config.

git-svn-id: https://svn.dealii.org/trunk@30191 0785d39b-7218-0410-832d-ea1e28bc413d

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young [Wed, 31 Jul 2013 09:03:54 +0000 (09:03 +0000)]

Add a publication (correct a publication)

git-svn-id: https://svn.dealii.org/trunk@30190 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Wed, 31 Jul 2013 01:33:58 +0000 (01:33 +0000)]

documentation patch by Oleh Krehel

git-svn-id: https://svn.dealii.org/trunk@30187 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 30 Jul 2013 22:15:50 +0000 (22:15 +0000)]

Add a brief initial sentence.

git-svn-id: https://svn.dealii.org/trunk@30186 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 30 Jul 2013 22:15:12 +0000 (22:15 +0000)]

Comment adjustment.

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maier [Tue, 30 Jul 2013 09:22:03 +0000 (09:22 +0000)]

CMake: And guard the last to occurences of a C compiler as well

git-svn-id: https://svn.dealii.org/trunk@30184 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 30 Jul 2013 09:15:30 +0000 (09:15 +0000)]

CMake: *sigh*

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maier [Tue, 30 Jul 2013 08:58:51 +0000 (08:58 +0000)]

CMake: Bugfix, use use supplied cxx flags throughout the configure phase, clean up CMAKE_REQUIRED_* setup and update documentation

git-svn-id: https://svn.dealii.org/trunk@30182 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 30 Jul 2013 03:02:49 +0000 (03:02 +0000)]

add failing test

git-svn-id: https://svn.dealii.org/trunk@30181 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 30 Jul 2013 02:35:34 +0000 (02:35 +0000)]

add test

git-svn-id: https://svn.dealii.org/trunk@30180 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 30 Jul 2013 02:35:22 +0000 (02:35 +0000)]

throw when you create a FE_Q of degree 0 (otherwise we try to allocate a LOT of memory)

git-svn-id: https://svn.dealii.org/trunk@30179 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 28 Jul 2013 18:32:53 +0000 (18:32 +0000)]

Clarify that a variable is a number of neighbors, not a has some/has no neighbors boolean.

git-svn-id: https://svn.dealii.org/trunk@30178 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 28 Jul 2013 18:32:49 +0000 (18:32 +0000)]

Fix a typo. Add another half sentence.

git-svn-id: https://svn.dealii.org/trunk@30177 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 28 Jul 2013 18:32:44 +0000 (18:32 +0000)]

Align semicolon as usual.

git-svn-id: https://svn.dealii.org/trunk@30176 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 27 Jul 2013 15:35:03 +0000 (15:35 +0000)]

Minor adjustments.

git-svn-id: https://svn.dealii.org/trunk@30175 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 27 Jul 2013 12:23:29 +0000 (12:23 +0000)]

CMake: Adjust MPI error message

git-svn-id: https://svn.dealii.org/trunk@30174 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 27 Jul 2013 12:15:16 +0000 (12:15 +0000)]

CMake: Cleanup

git-svn-id: https://svn.dealii.org/trunk@30173 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 27 Jul 2013 12:12:34 +0000 (12:12 +0000)]

CMake: Cleanup and restructure

git-svn-id: https://svn.dealii.org/trunk@30172 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 27 Jul 2013 11:48:15 +0000 (11:48 +0000)]

CMake: Fix typos

git-svn-id: https://svn.dealii.org/trunk@30171 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 27 Jul 2013 11:32:59 +0000 (11:32 +0000)]

CMake: A new header for Make.global_options as well

git-svn-id: https://svn.dealii.org/trunk@30170 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 27 Jul 2013 11:26:39 +0000 (11:26 +0000)]

CMake: Cleanup deal.IIConfig.cmake a bit

git-svn-id: https://svn.dealii.org/trunk@30169 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Sat, 27 Jul 2013 11:12:52 +0000 (11:12 +0000)]

Adapt step-18 to the resent changes in DataOut

git-svn-id: https://svn.dealii.org/trunk@30168 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sat, 27 Jul 2013 10:51:45 +0000 (10:51 +0000)]

No need for 'typename'.

git-svn-id: https://svn.dealii.org/trunk@30167 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 26 Jul 2013 22:58:02 +0000 (22:58 +0000)]

Also instantiate a member template.

git-svn-id: https://svn.dealii.org/trunk@30166 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 26 Jul 2013 20:53:24 +0000 (20:53 +0000)]

Add explicit instantiations.

git-svn-id: https://svn.dealii.org/trunk@30165 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 26 Jul 2013 18:23:16 +0000 (18:23 +0000)]

Fix names of header files.

git-svn-id: https://svn.dealii.org/trunk@30164 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 26 Jul 2013 18:20:35 +0000 (18:20 +0000)]

Improve error message.

git-svn-id: https://svn.dealii.org/trunk@30163 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 26 Jul 2013 16:31:42 +0000 (16:31 +0000)]

Fix wrong link (thanks, Jean!).

git-svn-id: https://svn.dealii.org/trunk@30162 0785d39b-7218-0410-832d-ea1e28bc413d

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frohne [Fri, 26 Jul 2013 15:34:23 +0000 (15:34 +0000)]

Diss of nicole klein 2013

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bangerth [Fri, 26 Jul 2013 13:45:27 +0000 (13:45 +0000)]

Update.

git-svn-id: https://svn.dealii.org/trunk@30160 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Fri, 26 Jul 2013 11:30:37 +0000 (11:30 +0000)]

Fix comment.

git-svn-id: https://svn.dealii.org/trunk@30159 0785d39b-7218-0410-832d-ea1e28bc413d

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turcksin [Thu, 25 Jul 2013 15:18:48 +0000 (15:18 +0000)]

Fix a bug when using 64bit indices.

git-svn-id: https://svn.dealii.org/trunk@30158 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 25 Jul 2013 13:54:49 +0000 (13:54 +0000)]

Link to download site from news page.

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bangerth [Thu, 25 Jul 2013 11:57:24 +0000 (11:57 +0000)]

Re-indent function argument list.

git-svn-id: https://svn.dealii.org/trunk@30156 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 25 Jul 2013 11:07:04 +0000 (11:07 +0000)]

Remove instantiation of a non-public function. This shouldn't be necessary since the function is now in an anonymous namespace and is not exported anyway.

git-svn-id: https://svn.dealii.org/trunk@30155 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Thu, 25 Jul 2013 10:53:32 +0000 (10:53 +0000)]

Patch by Felix Gruber: Fix all sorts of misspellings and documentation markup fixes.

git-svn-id: https://svn.dealii.org/trunk@30154 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Thu, 25 Jul 2013 08:28:41 +0000 (08:28 +0000)]

Reindent parameters in grid_generator.h

git-svn-id: https://svn.dealii.org/trunk@30153 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 24 Jul 2013 18:23:20 +0000 (18:23 +0000)]

Do not execute tutorial programs with mpirun -np 2. It violates the element of least surprise rule.

git-svn-id: https://svn.dealii.org/trunk@30152 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 24 Jul 2013 15:43:22 +0000 (15:43 +0000)]

Make tests work: convert DoFHandler::cell_iterator to DataOut::cell_iterator

git-svn-id: https://svn.dealii.org/trunk@30151 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Wed, 24 Jul 2013 14:28:03 +0000 (14:28 +0000)]

Implement DataOut::add_data_vector with DoFHandler argument to allow for different DoFHandlers

git-svn-id: https://svn.dealii.org/trunk@30150 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 24 Jul 2013 12:58:44 +0000 (12:58 +0000)]

Change GridGenerator from a class to a namespace. Undo introduction of local typedef size_type.

git-svn-id: https://svn.dealii.org/trunk@30149 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 24 Jul 2013 11:40:19 +0000 (11:40 +0000)]

Better document GridTools::laplace_transform.

git-svn-id: https://svn.dealii.org/trunk@30148 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Wed, 24 Jul 2013 09:28:41 +0000 (09:28 +0000)]

Change the comment headers in the examples so that they don't get stripped
away by strip_comments

git-svn-id: https://svn.dealii.org/trunk@30147 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Wed, 24 Jul 2013 03:02:22 +0000 (03:02 +0000)]

Get it right this time...

git-svn-id: https://svn.dealii.org/trunk@30146 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 23 Jul 2013 21:07:44 +0000 (21:07 +0000)]

Set the executable flag. Also adjust the starting revision number.

git-svn-id: https://svn.dealii.org/trunk@30145 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 23 Jul 2013 20:58:39 +0000 (20:58 +0000)]

benchmark: index.html is being generated

git-svn-id: https://svn.dealii.org/trunk@30144 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Tue, 23 Jul 2013 20:56:54 +0000 (20:56 +0000)]

update benchmark (cmake, interactive graphs, etc.)

git-svn-id: https://svn.dealii.org/trunk@30143 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 23 Jul 2013 20:02:51 +0000 (20:02 +0000)]

Also assume that MPI is present when generating documentation.

git-svn-id: https://svn.dealii.org/trunk@30142 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 23 Jul 2013 19:55:47 +0000 (19:55 +0000)]

Normalize results in a more useful way: don't just replace one version number by another, but by a generic string. This way we no longer have to bump version numbers every time we make a release.

git-svn-id: https://svn.dealii.org/trunk@30141 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 23 Jul 2013 17:24:57 +0000 (17:24 +0000)]

Update a remaining license header

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bangerth [Tue, 23 Jul 2013 16:32:21 +0000 (16:32 +0000)]

Remove a vestige from the days of gcc2.95.

git-svn-id: https://svn.dealii.org/trunk@30135 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 23 Jul 2013 15:39:41 +0000 (15:39 +0000)]

Add something.

git-svn-id: https://svn.dealii.org/trunk@30133 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Tue, 23 Jul 2013 13:49:55 +0000 (13:49 +0000)]

Fix some broken links. Update file properties.

git-svn-id: https://svn.dealii.org/trunk@30131 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 23 Jul 2013 09:13:42 +0000 (09:13 +0000)]

CMake: Silence clang warnings about unused arguments

git-svn-id: https://svn.dealii.org/trunk@30125 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Tue, 23 Jul 2013 09:13:41 +0000 (09:13 +0000)]

CMake: Bugfix, use the same Generator for when querying for language support.

git-svn-id: https://svn.dealii.org/trunk@30124 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 23 Jul 2013 08:33:32 +0000 (08:33 +0000)]

Add instantiations for dim=1, spacedim=3 to avoid undefined symbols with Intel compiler

git-svn-id: https://svn.dealii.org/trunk@30123 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Tue, 23 Jul 2013 06:45:12 +0000 (06:45 +0000)]

Fix warning with clang: Do not use -funroll-all-loops

git-svn-id: https://svn.dealii.org/trunk@30122 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 22 Jul 2013 23:58:09 +0000 (23:58 +0000)]

Move tests that currently fail.

git-svn-id: https://svn.dealii.org/trunk@30121 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 22 Jul 2013 23:55:08 +0000 (23:55 +0000)]

Add a test that currently fails.

git-svn-id: https://svn.dealii.org/trunk@30120 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 22 Jul 2013 23:19:52 +0000 (23:19 +0000)]

CMake: Implement ENABLE_LANGUAGE_OPTIONAL

git-svn-id: https://svn.dealii.org/trunk@30118 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 22 Jul 2013 21:59:48 +0000 (21:59 +0000)]

CMake: Be a bit more flexible in finding BLACS on DARWIN

git-svn-id: https://svn.dealii.org/trunk@30117 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 22 Jul 2013 21:38:13 +0000 (21:38 +0000)]

Get link to post-8.0 changes back in.

git-svn-id: https://svn.dealii.org/trunk@30116 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Mon, 22 Jul 2013 21:35:18 +0000 (21:35 +0000)]

update ignores

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heister [Mon, 22 Jul 2013 21:32:25 +0000 (21:32 +0000)]

release step 7

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heister [Mon, 22 Jul 2013 21:28:52 +0000 (21:28 +0000)]

update version information

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heister [Mon, 22 Jul 2013 21:25:02 +0000 (21:25 +0000)]

release step: 1, adjust changes

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bangerth [Mon, 22 Jul 2013 21:24:52 +0000 (21:24 +0000)]

Comment out link to recent changes.

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bangerth [Mon, 22 Jul 2013 21:23:43 +0000 (21:23 +0000)]

Announce 8.0.

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bangerth [Mon, 22 Jul 2013 20:48:39 +0000 (20:48 +0000)]

Several more.

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heister [Mon, 22 Jul 2013 20:28:28 +0000 (20:28 +0000)]

add funroll-all-loops if using gcc

git-svn-id: https://svn.dealii.org/trunk@30104 0785d39b-7218-0410-832d-ea1e28bc413d

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maier [Mon, 22 Jul 2013 19:35:24 +0000 (19:35 +0000)]

CMake: A small workaround

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bangerth [Mon, 22 Jul 2013 19:21:43 +0000 (19:21 +0000)]

New test. Currently fails, but clearly demonstrates the problem. The 'generic' output file has been verified to be correct.

git-svn-id: https://svn.dealii.org/trunk@30102 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 22 Jul 2013 19:21:14 +0000 (19:21 +0000)]

Fix the current failure of the various dof_test_21_b variants.

git-svn-id: https://svn.dealii.org/trunk@30101 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 22 Jul 2013 18:35:56 +0000 (18:35 +0000)]

New tests. The outputs have been verified to be correct and have been generated with r29524, which is correct.

git-svn-id: https://svn.dealii.org/trunk@30100 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 22 Jul 2013 18:12:40 +0000 (18:12 +0000)]

Remove unused variable.

git-svn-id: https://svn.dealii.org/trunk@30099 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 22 Jul 2013 18:11:42 +0000 (18:11 +0000)]

Remove unused variable.

git-svn-id: https://svn.dealii.org/trunk@30098 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 22 Jul 2013 15:28:27 +0000 (15:28 +0000)]

Set optimization flags for ICC to -O1 in accordance with the findings
here: http://code.google.com/p/dealii/issues/detail?id=30 . We may
revisit the issue at a later time, but for the moment this is the safe
approach.

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bangerth [Mon, 22 Jul 2013 15:18:35 +0000 (15:18 +0000)]

Adjust output that differs by round-off.

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heister [Mon, 22 Jul 2013 13:52:46 +0000 (13:52 +0000)]

add publication

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heister [Mon, 22 Jul 2013 13:50:37 +0000 (13:50 +0000)]

add publication

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bangerth [Mon, 22 Jul 2013 12:56:52 +0000 (12:56 +0000)]

Avoid filling a map with numeric_limit<types::boundary_id>::max() elements -- too many if we ever increase the number of bits in boundary_id.

git-svn-id: https://svn.dealii.org/trunk@30093 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 22 Jul 2013 12:44:57 +0000 (12:44 +0000)]

Fix a bug.

git-svn-id: https://svn.dealii.org/trunk@30092 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 22 Jul 2013 12:15:19 +0000 (12:15 +0000)]

Adjust output

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kronbichler [Mon, 22 Jul 2013 09:43:59 +0000 (09:43 +0000)]

Fix global_dof_index in matrix-free class: It should only be used when dealing with deal.II's global dof indices, not the matrix-free dof indices which are transformed into a process-local index space and start at zero on all processors. This limits the MPI-local problem size to 4 billion, but i) that limit is still far away and ii) there were many internal uses of unsigned int left that would have needed re-organization. This change saves memory as dof indices can be saved in 32-bit integer instead of 64-bit integers and still allows problems with >4g global dofs.

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kronbichler [Mon, 22 Jul 2013 09:38:03 +0000 (09:38 +0000)]

Prettify output

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kronbichler [Mon, 22 Jul 2013 06:07:51 +0000 (06:07 +0000)]

Remove stray typename

git-svn-id: https://svn.dealii.org/trunk@30088 0785d39b-7218-0410-832d-ea1e28bc413d

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kronbichler [Mon, 22 Jul 2013 06:03:33 +0000 (06:03 +0000)]

Simplify test case

git-svn-id: https://svn.dealii.org/trunk@30087 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 22 Jul 2013 02:58:54 +0000 (02:58 +0000)]

Implement VectorTools::project also for hp::DoFHandler. This required refactoring a whole bunch of other functions as well, as well as a good number of additional instantiations.

git-svn-id: https://svn.dealii.org/trunk@30086 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 22 Jul 2013 02:46:30 +0000 (02:46 +0000)]

Fix disabling bug in hp::DoFHandler::n_boundary_dofs().

git-svn-id: https://svn.dealii.org/trunk@30085 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Mon, 22 Jul 2013 01:59:20 +0000 (01:59 +0000)]

Put the cheap condition first in a conditional.

git-svn-id: https://svn.dealii.org/trunk@30084 0785d39b-7218-0410-832d-ea1e28bc413d

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bangerth [Sun, 21 Jul 2013 23:56:00 +0000 (23:56 +0000)]

Update comment to match what we are currently doing.

git-svn-id: https://svn.dealii.org/trunk@30083 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 21 Jul 2013 23:47:29 +0000 (23:47 +0000)]

revert to iterating back-wards which was changed in r30061 and broke a couple of tests (I don't understand why exactly though)

git-svn-id: https://svn.dealii.org/trunk@30082 0785d39b-7218-0410-832d-ea1e28bc413d

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heister [Sun, 21 Jul 2013 23:45:46 +0000 (23:45 +0000)]

more publicatoins

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bangerth [Sun, 21 Jul 2013 22:56:58 +0000 (22:56 +0000)]

Provide the same comments for begin_active/end_active as for the other DoFHandler and Triangulation.

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