Testsuite: Port to git

Update run_testsuite.cmake to commit git specific branch, commit, and
author information instead of svn branch and revision number.

Switch to git

... dedicated to the memory of CVS and SVN.

In string_to_int, strip spaces at the front and back as we used to do.

git-svn-id: https://svn.dealii.org/trunk@33203 0785d39b-7218-0410-832d-ea1e28bc413d

Detect errors in Utilities::string_to_int.

git-svn-id: https://svn.dealii.org/trunk@33202 0785d39b-7218-0410-832d-ea1e28bc413d

Detect errors in Utilities::string_to_int.

git-svn-id: https://svn.dealii.org/trunk@33201 0785d39b-7218-0410-832d-ea1e28bc413d

CMake: Do not export -Wl,--as-needed to the user config

This commit tries to address issue 235 by removing -Wl,--as-needed from
DEAL_II_LINKER_FLAGS prior to configuration of deal.II's project
config so that -Wl,--as-needed doesn't show up any more on user side.

git-svn-id: https://svn.dealii.org/trunk@33200 0785d39b-7218-0410-832d-ea1e28bc413d

Remove another unused function.

git-svn-id: https://svn.dealii.org/trunk@33199 0785d39b-7218-0410-832d-ea1e28bc413d

Remove functions that are not needed (and didn't do anything on top of that).

git-svn-id: https://svn.dealii.org/trunk@33198 0785d39b-7218-0410-832d-ea1e28bc413d

Added template to function, and made GridOut::write work also in codimension one.

git-svn-id: https://svn.dealii.org/trunk@33197 0785d39b-7218-0410-832d-ea1e28bc413d

Compute unit face support points of FE_TraceQ

git-svn-id: https://svn.dealii.org/trunk@33194 0785d39b-7218-0410-832d-ea1e28bc413d

some tests had rather large output. oops.

git-svn-id: https://svn.dealii.org/trunk@33192 0785d39b-7218-0410-832d-ea1e28bc413d

fix last commit

git-svn-id: https://svn.dealii.org/trunk@33191 0785d39b-7218-0410-832d-ea1e28bc413d

testsuite: also log the two filenames in diff in one line for scripting reasons

git-svn-id: https://svn.dealii.org/trunk@33190 0785d39b-7218-0410-832d-ea1e28bc413d

adjust test output

git-svn-id: https://svn.dealii.org/trunk@33189 0785d39b-7218-0410-832d-ea1e28bc413d

Fixed another call to KSPSetOperators

git-svn-id: https://svn.dealii.org/trunk@33188 0785d39b-7218-0410-832d-ea1e28bc413d

CMake: Bugfix: Generate options for test subprojects as a list

git-svn-id: https://svn.dealii.org/trunk@33187 0785d39b-7218-0410-832d-ea1e28bc413d

CMake: The obligatory bugfix...

git-svn-id: https://svn.dealii.org/trunk@33186 0785d39b-7218-0410-832d-ea1e28bc413d

CMake: Port to version 3.0.0, part 3.

Quick fix for new lexer rules (tm)

git-svn-id: https://svn.dealii.org/trunk@33185 0785d39b-7218-0410-832d-ea1e28bc413d

CMake: Port to version 3.0.0, part 2.

This commit removes the testsuite subproject regeneration callback and
cleans up the relevant code

git-svn-id: https://svn.dealii.org/trunk@33184 0785d39b-7218-0410-832d-ea1e28bc413d

Add a forgotten entry.

git-svn-id: https://svn.dealii.org/trunk@33182 0785d39b-7218-0410-832d-ea1e28bc413d

Update it a bit.

git-svn-id: https://svn.dealii.org/trunk@33181 0785d39b-7218-0410-832d-ea1e28bc413d

Improve documentation of step-52.

git-svn-id: https://svn.dealii.org/trunk@33180 0785d39b-7218-0410-832d-ea1e28bc413d

Address issue #228 (https://code.google.com/p/dealii/issues/detail?id=228): Teach GridReordering::reorder_cells() to use the vertex numbering that we have used every since deal.II 5.2. Remove the code for this from grid_generator.cc and instead call reorder_cells() from there with the flag set.

git-svn-id: https://svn.dealii.org/trunk@33179 0785d39b-7218-0410-832d-ea1e28bc413d

Copy Luca's example from tests/manifold/manifold_06.cc.

git-svn-id: https://svn.dealii.org/trunk@33178 0785d39b-7218-0410-832d-ea1e28bc413d

Do not write copies of the output to /tmp.

git-svn-id: https://svn.dealii.org/trunk@33177 0785d39b-7218-0410-832d-ea1e28bc413d

Reindent files according to our usual style.

git-svn-id: https://svn.dealii.org/trunk@33176 0785d39b-7218-0410-832d-ea1e28bc413d

Tests for the previous commit.

git-svn-id: https://svn.dealii.org/trunk@33175 0785d39b-7218-0410-832d-ea1e28bc413d

Also provide GridOut::write_vtu().

git-svn-id: https://svn.dealii.org/trunk@33174 0785d39b-7218-0410-832d-ea1e28bc413d

Tests for the previous commit.

git-svn-id: https://svn.dealii.org/trunk@33173 0785d39b-7218-0410-832d-ea1e28bc413d

Provide a function GridOut::write_vtk().

git-svn-id: https://svn.dealii.org/trunk@33172 0785d39b-7218-0410-832d-ea1e28bc413d

Clarify a piece of documentation that was pretty much unintelligible before.

git-svn-id: https://svn.dealii.org/trunk@33171 0785d39b-7218-0410-832d-ea1e28bc413d

The GridOut::Svg class does not implement functions to declare and parse parameters. Remove the declarations (currently commented out anyway) to avoid confusion.

git-svn-id: https://svn.dealii.org/trunk@33170 0785d39b-7218-0410-832d-ea1e28bc413d

Added set_manifold with two arguments.

git-svn-id: https://svn.dealii.org/trunk@33168 0785d39b-7218-0410-832d-ea1e28bc413d

Adjust type.

git-svn-id: https://svn.dealii.org/trunk@33166 0785d39b-7218-0410-832d-ea1e28bc413d

Start a new tutorial on geometry.

git-svn-id: https://svn.dealii.org/trunk@33165 0785d39b-7218-0410-832d-ea1e28bc413d

Move entry to the right place.

git-svn-id: https://svn.dealii.org/trunk@33164 0785d39b-7218-0410-832d-ea1e28bc413d

Fixed memory consumption test in realease mode.

git-svn-id: https://svn.dealii.org/trunk@33163 0785d39b-7218-0410-832d-ea1e28bc413d

Fix bug

git-svn-id: https://svn.dealii.org/trunk@33162 0785d39b-7218-0410-832d-ea1e28bc413d

Integrated branch manifold_id_intermediated into trunk.

git-svn-id: https://svn.dealii.org/trunk@33158 0785d39b-7218-0410-832d-ea1e28bc413d

Merged from trunk.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33157 0785d39b-7218-0410-832d-ea1e28bc413d

Fixed failing tests due to manifold id being an int.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33156 0785d39b-7218-0410-832d-ea1e28bc413d

Fixed get_boundary/manifold_ids. Removed all references to get_boundary in tria.cc

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33155 0785d39b-7218-0410-832d-ea1e28bc413d

Merged from trunk.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33154 0785d39b-7218-0410-832d-ea1e28bc413d

Fix some fallout from changing the size of manifold_id.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33153 0785d39b-7218-0410-832d-ea1e28bc413d

Arg...

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33152 0785d39b-7218-0410-832d-ea1e28bc413d

Make it compile.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33151 0785d39b-7218-0410-832d-ea1e28bc413d

More documentation updates.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33150 0785d39b-7218-0410-832d-ea1e28bc413d

Enlarge manifold_id to unsigned int, as discussed on the mailing list.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33149 0785d39b-7218-0410-832d-ea1e28bc413d

Leave a note.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33148 0785d39b-7218-0410-832d-ea1e28bc413d

Minor comment updates.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33147 0785d39b-7218-0410-832d-ea1e28bc413d

Indent something.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33146 0785d39b-7218-0410-832d-ea1e28bc413d

Reshuffle items to have them sorted in alphabetical order.

git-svn-id: https://svn.dealii.org/trunk@33145 0785d39b-7218-0410-832d-ea1e28bc413d

update readme.html to refer to muparser

git-svn-id: https://svn.dealii.org/trunk@33144 0785d39b-7218-0410-832d-ea1e28bc413d

Add test for previous commit.

git-svn-id: https://svn.dealii.org/trunk@33143 0785d39b-7218-0410-832d-ea1e28bc413d

Work around a bug in PETSc whereby PETSc does not zero-initialize ghost elements of a vector.

git-svn-id: https://svn.dealii.org/trunk@33142 0785d39b-7218-0410-832d-ea1e28bc413d

Provide more links to video lectures.

git-svn-id: https://svn.dealii.org/trunk@33141 0785d39b-7218-0410-832d-ea1e28bc413d

Annotate some of the programs with links to the video lectures.

git-svn-id: https://svn.dealii.org/trunk@33140 0785d39b-7218-0410-832d-ea1e28bc413d

Fix a bug when using 64bit indices.

git-svn-id: https://svn.dealii.org/trunk@33137 0785d39b-7218-0410-832d-ea1e28bc413d

Go through the rest of the introduction, the results section and some of the program. Make minor adjustments.

git-svn-id: https://svn.dealii.org/trunk@33135 0785d39b-7218-0410-832d-ea1e28bc413d

Remove a file we have not needed for a long time.

git-svn-id: https://svn.dealii.org/trunk@33134 0785d39b-7218-0410-832d-ea1e28bc413d

Group functions for more readable documentation.

git-svn-id: https://svn.dealii.org/trunk@33133 0785d39b-7218-0410-832d-ea1e28bc413d

Update documentation in a couple of places. Remove some code duplication.

git-svn-id: https://svn.dealii.org/trunk@33132 0785d39b-7218-0410-832d-ea1e28bc413d

Reindent script files

git-svn-id: https://svn.dealii.org/trunk@33131 0785d39b-7218-0410-832d-ea1e28bc413d

Minor edits.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33130 0785d39b-7218-0410-832d-ea1e28bc413d

"geometrical" does not exist as a word :-)

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33129 0785d39b-7218-0410-832d-ea1e28bc413d

Minor edits.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33128 0785d39b-7218-0410-832d-ea1e28bc413d

Minor edits.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33127 0785d39b-7218-0410-832d-ea1e28bc413d

Make sure to generate all necessary symbols

git-svn-id: https://svn.dealii.org/trunk@33126 0785d39b-7218-0410-832d-ea1e28bc413d

Augment documentation.

git-svn-id: https://svn.dealii.org/trunk@33125 0785d39b-7218-0410-832d-ea1e28bc413d

Reindent.

git-svn-id: https://svn.dealii.org/trunk@33124 0785d39b-7218-0410-832d-ea1e28bc413d

Add notes for MUMPS.

git-svn-id: https://svn.dealii.org/trunk@33123 0785d39b-7218-0410-832d-ea1e28bc413d

Document how to compile Trilinos with direct solvers.

git-svn-id: https://svn.dealii.org/trunk@33122 0785d39b-7218-0410-832d-ea1e28bc413d

Document how to compile Trilinos with direct solvers.

git-svn-id: https://svn.dealii.org/trunk@33121 0785d39b-7218-0410-832d-ea1e28bc413d

Extend comment of direct solver class

git-svn-id: https://svn.dealii.org/trunk@33120 0785d39b-7218-0410-832d-ea1e28bc413d

Use alias to refer to multithreaded methods.

git-svn-id: https://svn.dealii.org/trunk@33119 0785d39b-7218-0410-832d-ea1e28bc413d

Try to avoid differences in roundoff by using weaker tolerance for Bicgstab solver

git-svn-id: https://svn.dealii.org/trunk@33118 0785d39b-7218-0410-832d-ea1e28bc413d

Patch by Uwe Koecher: select among Trilinos solvers

git-svn-id: https://svn.dealii.org/trunk@33117 0785d39b-7218-0410-832d-ea1e28bc413d

Document which basic linear algebra functions are currently multithreaded.

git-svn-id: https://svn.dealii.org/trunk@33116 0785d39b-7218-0410-832d-ea1e28bc413d

Move the publications site to the top-level of dealii.org to provide it with a more 'corporate' feel.

git-svn-id: https://svn.dealii.org/trunk@33115 0785d39b-7218-0410-832d-ea1e28bc413d

Fix markup.

git-svn-id: https://svn.dealii.org/trunk@33114 0785d39b-7218-0410-832d-ea1e28bc413d

Add one.

git-svn-id: https://svn.dealii.org/trunk@33113 0785d39b-7218-0410-832d-ea1e28bc413d

Update comment

git-svn-id: https://svn.dealii.org/trunk@33112 0785d39b-7218-0410-832d-ea1e28bc413d

Fixed a couple of call changes for PETSc 3.5.0

git-svn-id: https://svn.dealii.org/trunk@33111 0785d39b-7218-0410-832d-ea1e28bc413d

write a debug file with the first residual even if we converge in one step

git-svn-id: https://svn.dealii.org/trunk@33110 0785d39b-7218-0410-832d-ea1e28bc413d

Implement some new Trilinos preconditioner. Tests.

git-svn-id: https://svn.dealii.org/trunk@33109 0785d39b-7218-0410-832d-ea1e28bc413d

Provide missing instantiations.

git-svn-id: https://svn.dealii.org/trunk@33108 0785d39b-7218-0410-832d-ea1e28bc413d

Add two.

git-svn-id: https://svn.dealii.org/trunk@33107 0785d39b-7218-0410-832d-ea1e28bc413d

Update output.

git-svn-id: https://svn.dealii.org/trunk@33106 0785d39b-7218-0410-832d-ea1e28bc413d

Fix markup.

git-svn-id: https://svn.dealii.org/trunk@33105 0785d39b-7218-0410-832d-ea1e28bc413d

Fixed GridGenerator::merge_triangulations, Issue 197

git-svn-id: https://svn.dealii.org/trunk@33104 0785d39b-7218-0410-832d-ea1e28bc413d

Fix test

git-svn-id: https://svn.dealii.org/trunk@33103 0785d39b-7218-0410-832d-ea1e28bc413d

Avoid Epetra_MultiVector with 0 vectors

git-svn-id: https://svn.dealii.org/trunk@33102 0785d39b-7218-0410-832d-ea1e28bc413d

Fix markup.

git-svn-id: https://svn.dealii.org/trunk@33101 0785d39b-7218-0410-832d-ea1e28bc413d

Add another testcase that currently fails, see issue 197 (https://code.google.com/p/dealii/issues/detail?id=197).

git-svn-id: https://svn.dealii.org/trunk@33100 0785d39b-7218-0410-832d-ea1e28bc413d

Commit bug in Trilinos precondition

git-svn-id: https://svn.dealii.org/trunk@33099 0785d39b-7218-0410-832d-ea1e28bc413d

Fixed some comments for boundary ids and manifold ids.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33098 0785d39b-7218-0410-832d-ea1e28bc413d

Fixed serialization issue with manifold ids.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33097 0785d39b-7218-0410-832d-ea1e28bc413d

Merged from trunk.

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33096 0785d39b-7218-0410-832d-ea1e28bc413d

Fixed hp/solution_transfer_05 output to be valid with or without zlib

git-svn-id: https://svn.dealii.org/branches/branch_manifold_id_intermediate@33095 0785d39b-7218-0410-832d-ea1e28bc413d

Simplify FEEvaluation routines considerably by merging all functionality into FEEvaluation. The internal implementation is done in internal::FEEvaluationImpl that provides the same efficient kernels as before, but frees the user from tedious selection of the appropriate kernel for the element in use.

git-svn-id: https://svn.dealii.org/trunk@33094 0785d39b-7218-0410-832d-ea1e28bc413d