https://gitweb.dealii.org/

Wolfgang Bangerth [Sat, 23 Nov 2013 04:01:49 +0000 (04:01 +0000)]

Also finish documentation of step-14.

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Wolfgang Bangerth [Sat, 23 Nov 2013 01:57:28 +0000 (01:57 +0000)]

Document the most recent WorkStream changes to step-9. Update output. Use VTK format instead of the outdated GMV format.

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Bruno Turcksin [Fri, 22 Nov 2013 22:30:20 +0000 (22:30 +0000)]

Add documentation for resolve_indices function.

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Bruno Turcksin [Fri, 22 Nov 2013 20:58:21 +0000 (20:58 +0000)]

Add a function to resolve constraint indices.

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Timo Heister [Fri, 22 Nov 2013 20:22:01 +0000 (20:22 +0000)]

inline DoFRenumbering::downstream to fix compilation issue with intel compilers; also remove deprecated MGDoFHandler variant in the process

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Matthias Maier [Fri, 22 Nov 2013 15:58:22 +0000 (15:58 +0000)]

Put the -no-vec declaration into the right file :->

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Timo Heister [Fri, 22 Nov 2013 15:41:05 +0000 (15:41 +0000)]

test requires trilinos

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Wolfgang Bangerth [Fri, 22 Nov 2013 15:08:08 +0000 (15:08 +0000)]

Resolve another oddity in how GCC and ICC output __PRETTY_FUNCTION__, this time when virtual functions are involved.

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Wolfgang Bangerth [Fri, 22 Nov 2013 15:05:35 +0000 (15:05 +0000)]

First part of documenting the switch to WorkStream in GradientEstimation.

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Timo Heister [Fri, 22 Nov 2013 14:42:37 +0000 (14:42 +0000)]

rework r31759 to my liking and fix a few more places

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Timo Heister [Fri, 22 Nov 2013 14:34:38 +0000 (14:34 +0000)]

disable vectorization on intel compilers because they produce wrong code. See issue 156.

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Matthias Maier [Fri, 22 Nov 2013 14:28:04 +0000 (14:28 +0000)]

Replace "rand" by "myrand" in the testsuite to avoid a name clash

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Matthias Maier [Fri, 22 Nov 2013 13:03:11 +0000 (13:03 +0000)]

Bugfix: create ${TARGET}.signed dummy file in CMakeFiles directory

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Wolfgang Bangerth [Fri, 22 Nov 2013 03:34:54 +0000 (03:34 +0000)]

Simplify code slightly.

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Eric Heien [Fri, 22 Nov 2013 02:09:28 +0000 (02:09 +0000)]

Removed comments after confirming changes work

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Wolfgang Bangerth [Fri, 22 Nov 2013 01:14:27 +0000 (01:14 +0000)]

Document the third kind of WorkStream::run.

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Timo Heister [Thu, 21 Nov 2013 22:17:34 +0000 (22:17 +0000)]

fix compiler warning

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Timo Heister [Thu, 21 Nov 2013 21:31:42 +0000 (21:31 +0000)]

add test for issue 154 fixed in r31734

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Timo Heister [Thu, 21 Nov 2013 16:24:24 +0000 (16:24 +0000)]

fix clang warnings

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Timo Heister [Thu, 21 Nov 2013 15:54:28 +0000 (15:54 +0000)]

remove one clang compiler warning

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Timo Heister [Thu, 21 Nov 2013 15:52:52 +0000 (15:52 +0000)]

fix test output

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Timo Heister [Thu, 21 Nov 2013 15:49:28 +0000 (15:49 +0000)]

check in proposed change in issue 148 to get rid of crashes in the tests. Not sure if the logic is correct.

git-svn-id: https://svn.dealii.org/trunk@31748 0785d39b-7218-0410-832d-ea1e28bc413d

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Timo Heister [Thu, 21 Nov 2013 15:45:08 +0000 (15:45 +0000)]

run test with one proc too, because it crashes on some machines

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Timo Heister [Thu, 21 Nov 2013 15:44:42 +0000 (15:44 +0000)]

fix exception specification for rand() in tests

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Timo Heister [Thu, 21 Nov 2013 03:07:40 +0000 (03:07 +0000)]

write own rand() function for the test suite because cygwin has a different implementation. I hope this will not break any test.

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Timo Heister [Thu, 21 Nov 2013 02:18:32 +0000 (02:18 +0000)]

reference tests.h in test

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Matthias Maier [Thu, 21 Nov 2013 01:22:06 +0000 (01:22 +0000)]

Testsuite: Bugfix: Fix a typo that prevented all tests under ./deal.II/tests from being set up

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Matthias Maier [Wed, 20 Nov 2013 21:55:56 +0000 (21:55 +0000)]

Documentation update

git-svn-id: https://svn.dealii.org/trunk@31741 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Wed, 20 Nov 2013 21:33:59 +0000 (21:33 +0000)]

CMake: Forbid to use ninja together with icc

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Matthias Maier [Wed, 20 Nov 2013 21:08:30 +0000 (21:08 +0000)]

Testsuite: Some more refactoring and cleanup

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Timo Heister [Wed, 20 Nov 2013 20:27:59 +0000 (20:27 +0000)]

clean up and simplify recent changes in exceptions.cc

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Daniel Arndt [Wed, 20 Nov 2013 18:55:19 +0000 (18:55 +0000)]

Finally fixed the bug in make_zero_boundary_constraints (Issue 154)

git-svn-id: https://svn.dealii.org/trunk@31734 0785d39b-7218-0410-832d-ea1e28bc413d

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Daniel Arndt [Wed, 20 Nov 2013 17:39:44 +0000 (17:39 +0000)]

Revert false correction.

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Daniel Arndt [Wed, 20 Nov 2013 17:35:25 +0000 (17:35 +0000)]

Fixed bug regarding the use of ComponentMask in make_zero_boundary_constraints.

git-svn-id: https://svn.dealii.org/trunk@31732 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Wed, 20 Nov 2013 17:31:56 +0000 (17:31 +0000)]

Bufix: Well, it is a good idea to not destroy formerly working functionality

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Matthias Maier [Wed, 20 Nov 2013 16:11:01 +0000 (16:11 +0000)]

Testsuite: Remove the dependency of setup_tests on a built library, let's see...

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Matthias Maier [Wed, 20 Nov 2013 15:41:51 +0000 (15:41 +0000)]

Testsuite: Refactor testsuite setup into its own project.

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Wolfgang Bangerth [Wed, 20 Nov 2013 14:12:30 +0000 (14:12 +0000)]

Link to the CS&D paper.

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Wolfgang Bangerth [Wed, 20 Nov 2013 14:00:04 +0000 (14:00 +0000)]

Minor indentation changes.

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Matthias Maier [Wed, 20 Nov 2013 10:31:09 +0000 (10:31 +0000)]

Cleanup ExceptionBase: Inherit from std::exception and do the c_string handling directly to avoid the const_casts

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Martin Kronbichler [Wed, 20 Nov 2013 09:54:38 +0000 (09:54 +0000)]

Introduce IterationNumberControl to perform a fixed number of solver steps without throwing an exception.

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Timo Heister [Tue, 19 Nov 2013 22:27:40 +0000 (22:27 +0000)]

defer backtrace lookup in dealii::Exception for performance reasons

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Matthias Maier [Tue, 19 Nov 2013 21:43:56 +0000 (21:43 +0000)]

CMake: Bugfix: Only run "make sign" if it is necessary

git-svn-id: https://svn.dealii.org/trunk@31718 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Tue, 19 Nov 2013 21:37:09 +0000 (21:37 +0000)]

CMake: Provide a possibility to automatically sign generated executables on Mac OSX

git-svn-id: https://svn.dealii.org/trunk@31717 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Tue, 19 Nov 2013 21:14:03 +0000 (21:14 +0000)]

Documentation: Add a small section about how to create a new category

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Timo Heister [Tue, 19 Nov 2013 19:55:52 +0000 (19:55 +0000)]

replace include of dof_handler_policy.h in dof_handler.h by forward declaration

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Timo Heister [Tue, 19 Nov 2013 19:53:40 +0000 (19:53 +0000)]

test only works if you have petsc and trilinos

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Timo Heister [Tue, 19 Nov 2013 16:40:27 +0000 (16:40 +0000)]

rework r31702

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Timo Heister [Tue, 19 Nov 2013 15:52:06 +0000 (15:52 +0000)]

fix r31695, explicit instantiations are not needed after all

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Timo Heister [Tue, 19 Nov 2013 15:14:30 +0000 (15:14 +0000)]

rewrap comments (phew)

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Timo Heister [Tue, 19 Nov 2013 15:06:06 +0000 (15:06 +0000)]

update documentation

git-svn-id: https://svn.dealii.org/trunk@31708 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Tue, 19 Nov 2013 14:52:55 +0000 (14:52 +0000)]

Testsuite: Bugfix: Allow to run the testsuite script from within an insource build

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Toby D. Young [Tue, 19 Nov 2013 13:57:06 +0000 (13:57 +0000)]

Bug fix.

git-svn-id: https://svn.dealii.org/trunk@31706 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Tue, 19 Nov 2013 13:54:40 +0000 (13:54 +0000)]

Provide more context in the documentation and link to a paper in preparation.

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Timo Heister [Tue, 19 Nov 2013 00:56:36 +0000 (00:56 +0000)]

do not use typeid internally because this is broken on intel 13+. Instead: emulate this in the DoFHandlerPolicy classes. Also update test output

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Timo Heister [Mon, 18 Nov 2013 16:07:44 +0000 (16:07 +0000)]

add missing instantiations (for intel)

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Timo Heister [Mon, 18 Nov 2013 13:52:31 +0000 (13:52 +0000)]

test: add whitespace to output so that numdiff can work, output more digits

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Timo Heister [Mon, 18 Nov 2013 13:50:11 +0000 (13:50 +0000)]

loosen tolerance in test to make it pass

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Timo Heister [Mon, 18 Nov 2013 12:17:34 +0000 (12:17 +0000)]

output more digits in test

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Timo Heister [Mon, 18 Nov 2013 03:33:02 +0000 (03:33 +0000)]

output more digits in test

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Timo Heister [Mon, 18 Nov 2013 01:52:08 +0000 (01:52 +0000)]

mention changes

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Timo Heister [Mon, 18 Nov 2013 01:43:40 +0000 (01:43 +0000)]

fix template instantiations for GridGenerator::parallelogram, do not pass array as a reference

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Wolfgang Bangerth [Mon, 18 Nov 2013 01:32:14 +0000 (01:32 +0000)]

Augment documentation.

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Wolfgang Bangerth [Mon, 18 Nov 2013 01:31:26 +0000 (01:31 +0000)]

Fix the failure of find_cell_10a by implementing a better stopping criterion for the Newton iteration, using a variable metric Newton method.

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Timo Heister [Mon, 18 Nov 2013 00:04:49 +0000 (00:04 +0000)]

fix typo

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Wolfgang Bangerth [Sun, 17 Nov 2013 19:36:35 +0000 (19:36 +0000)]

Also run test in optimized mode.

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Wolfgang Bangerth [Sun, 17 Nov 2013 19:35:59 +0000 (19:35 +0000)]

Fix one testcase, see https://code.google.com/p/dealii/issues/detail?id=134 . Since we are having so much trouble with this function, I also left my debug code in there, guarded with \#ifdef DEBUG_NO_NORMAL_FLUX. Adjust testcase.

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Wolfgang Bangerth [Sun, 17 Nov 2013 19:35:33 +0000 (19:35 +0000)]

Fix one testcase, see https://code.google.com/p/dealii/issues/detail?id=134 . Since we are having so much trouble with this function, I also left my debug code in there, guarded with \#ifdef DEBUG_NO_NORMAL_FLUX.

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Martin Kronbichler [Sun, 17 Nov 2013 15:45:16 +0000 (15:45 +0000)]

Fix non-MPI case

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Martin Kronbichler [Sun, 17 Nov 2013 15:44:08 +0000 (15:44 +0000)]

Fix description

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Martin Steigemann [Sun, 17 Nov 2013 14:49:49 +0000 (14:49 +0000)]

Fixed: FETools::inteprolation_difference was not working with TrilinosWrappers::MPI::Vectors with ghost entries, also, TrilinosWrappers::VectorBase has a get_mpi_communicator method now.

git-svn-id: https://svn.dealii.org/trunk@31686 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Sat, 16 Nov 2013 12:46:15 +0000 (12:46 +0000)]

Fix a note in a comment.

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Matthias Maier [Sat, 16 Nov 2013 09:39:22 +0000 (09:39 +0000)]

Testsuite: Fix data_out_stack_0?

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Matthias Maier [Sat, 16 Nov 2013 08:31:05 +0000 (08:31 +0000)]

Bugfix: Define FP_USE_THREAD_SAFE_EVAL in case of enabled multithreading support.

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Matthias Maier [Sat, 16 Nov 2013 08:04:28 +0000 (08:04 +0000)]

Set missing svn:keywords property on a bunch of files

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Matthias Maier [Sat, 16 Nov 2013 07:51:41 +0000 (07:51 +0000)]

Fix a lot of stray $Id$s

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Wolfgang Bangerth [Fri, 15 Nov 2013 23:12:48 +0000 (23:12 +0000)]

Fix error message.

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Wolfgang Bangerth [Fri, 15 Nov 2013 21:28:50 +0000 (21:28 +0000)]

Minor language fix.

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Timo Heister [Fri, 15 Nov 2013 21:11:09 +0000 (21:11 +0000)]

update comment

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Timo Heister [Fri, 15 Nov 2013 21:10:16 +0000 (21:10 +0000)]

fix test output

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Timo Heister [Fri, 15 Nov 2013 21:10:02 +0000 (21:10 +0000)]

assert that we have a enough fe components in compute_no_normal_flux_constraints

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Timo Heister [Fri, 15 Nov 2013 18:52:33 +0000 (18:52 +0000)]

add failing test for no_flux

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Matthias Maier [Fri, 15 Nov 2013 15:35:45 +0000 (15:35 +0000)]

Add PETSC_WITH_COMPLEX to Config.sample

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Matthias Maier [Fri, 15 Nov 2013 15:31:05 +0000 (15:31 +0000)]

Testsuite: Fix the issue with binary outputs and data_out_base_dx

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Wolfgang Bangerth [Fri, 15 Nov 2013 15:23:01 +0000 (15:23 +0000)]

Split a function in hopes to alleviate linker errors with ICC.

git-svn-id: https://svn.dealii.org/trunk@31671 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Fri, 15 Nov 2013 14:30:09 +0000 (14:30 +0000)]

Testsuite: Also accept numerical values that have a relative error of less than 1.e-8 (but an absolute error of more than 1.e-6)

git-svn-id: https://svn.dealii.org/trunk@31670 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Thu, 14 Nov 2013 23:29:32 +0000 (23:29 +0000)]

CMake: Bugfix: Do not use >/dev/null on native Windows targets

git-svn-id: https://svn.dealii.org/trunk@31669 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Thu, 14 Nov 2013 23:29:29 +0000 (23:29 +0000)]

CMake: Remove debug output

git-svn-id: https://svn.dealii.org/trunk@31668 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 14 Nov 2013 23:17:10 +0000 (23:17 +0000)]

Replace the expensive computation of a set intersection with the cheap computation whether two sets have a nonempty intersection at all. We don't need the intersection anyway.

git-svn-id: https://svn.dealii.org/trunk@31667 0785d39b-7218-0410-832d-ea1e28bc413d

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Matthias Maier [Thu, 14 Nov 2013 22:20:28 +0000 (22:20 +0000)]

CMake: Print TEST_DIR during configuration so that one actually has a clue which TEST_DIR was processed

git-svn-id: https://svn.dealii.org/trunk@31666 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Thu, 14 Nov 2013 22:19:53 +0000 (22:19 +0000)]

fixed output

git-svn-id: https://svn.dealii.org/trunk@31665 0785d39b-7218-0410-832d-ea1e28bc413d

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Guido Kanschat [Thu, 14 Nov 2013 22:10:37 +0000 (22:10 +0000)]

add missing initialization

git-svn-id: https://svn.dealii.org/trunk@31664 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 14 Nov 2013 21:40:04 +0000 (21:40 +0000)]

Adjust the output of some tests so that we get below the threshold of numdiff.

git-svn-id: https://svn.dealii.org/trunk@31663 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 14 Nov 2013 21:38:59 +0000 (21:38 +0000)]

Initialize a variable to avoid a testsuite failure with ICC 14.

git-svn-id: https://svn.dealii.org/trunk@31662 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 14 Nov 2013 20:38:31 +0000 (20:38 +0000)]

Avoid instantiating FE_FaceQ and FE_FaceP in 1d.

git-svn-id: https://svn.dealii.org/trunk@31661 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 14 Nov 2013 20:29:27 +0000 (20:29 +0000)]

Match function instantiation to the original declaration in hopes to
make ICC 14 happy. Unfortunately, this is not the case.

git-svn-id: https://svn.dealii.org/trunk@31660 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 14 Nov 2013 20:23:07 +0000 (20:23 +0000)]

Provide a missing template instantiation.

git-svn-id: https://svn.dealii.org/trunk@31659 0785d39b-7218-0410-832d-ea1e28bc413d

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Wolfgang Bangerth [Thu, 14 Nov 2013 20:06:27 +0000 (20:06 +0000)]

Augment an exception message. This doesn't solve the problem, but it
gets us closer to it...

git-svn-id: https://svn.dealii.org/trunk@31658 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Thu, 14 Nov 2013 14:16:32 +0000 (14:16 +0000)]

Add a harmless macro PETSC_WITH_COMPLEX.

git-svn-id: https://svn.dealii.org/trunk@31653 0785d39b-7218-0410-832d-ea1e28bc413d

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Toby D. Young [Thu, 14 Nov 2013 14:15:16 +0000 (14:15 +0000)]

Put in a missing word that was bugging me...

git-svn-id: https://svn.dealii.org/trunk@31652 0785d39b-7218-0410-832d-ea1e28bc413d

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