]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
6 years agoRemove strict inclusion guards in unified AD header
Jean-Paul Pelteret [Thu, 16 Nov 2017 17:08:26 +0000 (18:08 +0100)]
Remove strict inclusion guards in unified AD header

6 years agoMerge pull request #5392 from jppelteret/ad-numbers_and_type_traits
Jean-Paul Pelteret [Thu, 16 Nov 2017 07:26:39 +0000 (08:26 +0100)]
Merge pull request #5392 from jppelteret/ad-numbers_and_type_traits

 Implement type traits and helper classes for AD numbers

6 years agoMerge pull request #5471 from masterleinad/avoid_ub
Martin Kronbichler [Thu, 16 Nov 2017 07:06:28 +0000 (08:06 +0100)]
Merge pull request #5471 from masterleinad/avoid_ub

Guard some calls to memcpy, memset and memmove to avoid undefined behavior

6 years agoAdd tests for number traits classes: Sacado 5392/head
Jean-Paul Pelteret [Fri, 3 Nov 2017 19:15:41 +0000 (20:15 +0100)]
Add tests for number traits classes: Sacado

6 years agoAdd tests for number traits classes: Adol-C
Jean-Paul Pelteret [Fri, 3 Nov 2017 19:15:24 +0000 (20:15 +0100)]
Add tests for number traits classes: Adol-C

6 years agoImplement type traits and helper classes for Sacado numbers
Jean-Paul Pelteret [Fri, 3 Nov 2017 13:18:11 +0000 (14:18 +0100)]
Implement type traits and helper classes for Sacado numbers

6 years agoImplement type traits and helper classes for Adol-C numbers
Jean-Paul Pelteret [Fri, 3 Nov 2017 13:08:31 +0000 (14:08 +0100)]
Implement type traits and helper classes for Adol-C numbers

6 years agoAdd core headers for internally supported AD numbers
Jean-Paul Pelteret [Fri, 3 Nov 2017 12:47:04 +0000 (13:47 +0100)]
Add core headers for internally supported AD numbers

- Type codes
- Type traits

6 years agoAdd a unifying header for auto-differentation.
Jean-Paul Pelteret [Wed, 15 Nov 2017 12:44:12 +0000 (13:44 +0100)]
Add a unifying header for auto-differentation.

6 years agoAdd initial outline of documentation for the AD/SD module.
Jean-Paul Pelteret [Wed, 15 Nov 2017 12:37:18 +0000 (13:37 +0100)]
Add initial outline of documentation for the AD/SD module.

6 years agoMerge pull request #5472 from gassmoeller/fix_find_active_cell_around_point
Daniel Arndt [Thu, 16 Nov 2017 00:01:05 +0000 (01:01 +0100)]
Merge pull request #5472 from gassmoeller/fix_find_active_cell_around_point

Fix search for the cell of a vertex

6 years agoGuard some calls to memcpy, memset and memmove to avoid undefined behavior 5471/head
Daniel Arndt [Wed, 15 Nov 2017 15:50:21 +0000 (16:50 +0100)]
Guard some calls to memcpy, memset and memmove to avoid undefined behavior

6 years agoFix search for a vertex location 5472/head
Rene Gassmoeller [Wed, 15 Nov 2017 21:10:51 +0000 (14:10 -0700)]
Fix search for a vertex location

6 years agoMerge pull request #5457 from davydden/tests/sundials_fixes
Luca Heltai [Wed, 15 Nov 2017 16:37:17 +0000 (17:37 +0100)]
Merge pull request #5457 from davydden/tests/sundials_fixes

try to fix sundials tests

6 years agoMerge pull request #5467 from davydden/fix_deprecated_bug
Denis Davydov [Wed, 15 Nov 2017 12:08:55 +0000 (13:08 +0100)]
Merge pull request #5467 from davydden/fix_deprecated_bug

fix deprecation bug

6 years agofix deprecation bug 5467/head
Denis Davydov [Wed, 15 Nov 2017 10:52:52 +0000 (11:52 +0100)]
fix deprecation bug

6 years agoMerge pull request #5464 from vishalkenchan/rol/vector_adaptor
Daniel Arndt [Wed, 15 Nov 2017 09:05:59 +0000 (10:05 +0100)]
Merge pull request #5464 from vishalkenchan/rol/vector_adaptor

suppress use of ROL for older versions of Trilinos

6 years agoMerge pull request #5465 from sairajat/AssertionAdd
Daniel Arndt [Wed, 15 Nov 2017 09:05:13 +0000 (10:05 +0100)]
Merge pull request #5465 from sairajat/AssertionAdd

Added Assert in fe_values.h to ensure fe_values object is reinited to cell

6 years agoChecked Indentation 5465/head
RAJAT ARORA [Tue, 14 Nov 2017 18:18:10 +0000 (13:18 -0500)]
Checked Indentation

6 years agoMerge pull request #5463 from jppelteret/sacado_complex_rad_guard
Jean-Paul Pelteret [Tue, 14 Nov 2017 18:15:13 +0000 (19:15 +0100)]
Merge pull request #5463 from jppelteret/sacado_complex_rad_guard

Detect a compiler bug that prevents compilation of complex Sacado::Rad.

6 years agoAdded Assert in fe_values.h to ensure fe_values object is reinited to a cell
RAJAT ARORA [Tue, 14 Nov 2017 18:13:13 +0000 (13:13 -0500)]
Added Assert in fe_values.h to ensure fe_values object is reinited to a cell

6 years agorecommend enabling ROL package while building Trilinos 5464/head
vishalkenchan [Tue, 14 Nov 2017 17:45:24 +0000 (18:45 +0100)]
recommend enabling ROL package while building Trilinos

6 years agosuppress use of ROL for older versions of Trilinos
vishalkenchan [Tue, 14 Nov 2017 16:35:14 +0000 (17:35 +0100)]
suppress use of ROL for older versions of Trilinos

6 years agoMerge pull request #5462 from masterleinad/fix_test_project_03 5264/head
Denis Davydov [Tue, 14 Nov 2017 14:54:51 +0000 (15:54 +0100)]
Merge pull request #5462 from masterleinad/fix_test_project_03

Fix numerics/project_03

6 years agoMerge pull request #5459 from masterleinad/use_c++14_deprecated
Timo Heister [Tue, 14 Nov 2017 14:48:46 +0000 (09:48 -0500)]
Merge pull request #5459 from masterleinad/use_c++14_deprecated

Use c++14's [[deprecated]] if possible

6 years agoDetect a compiler bug that prevents compilation of complex Sacado::Rad. 5463/head
Jean-Paul Pelteret [Tue, 14 Nov 2017 14:31:45 +0000 (15:31 +0100)]
Detect a compiler bug that prevents compilation of complex Sacado::Rad.

6 years agoMerge pull request #5443 from davydden/vtu_binary
Wolfgang Bangerth [Tue, 14 Nov 2017 13:37:24 +0000 (06:37 -0700)]
Merge pull request #5443 from davydden/vtu_binary

filter XML binary output in some tests

6 years agoFix numerics/project_03 5462/head
Daniel Arndt [Tue, 14 Nov 2017 13:04:10 +0000 (14:04 +0100)]
Fix numerics/project_03

6 years agofix sundials tests 5457/head
Denis Davydov [Mon, 13 Nov 2017 20:59:12 +0000 (21:59 +0100)]
fix sundials tests

6 years agoMerge pull request #5461 from jppelteret/fix_5455
Jean-Paul Pelteret [Tue, 14 Nov 2017 08:32:38 +0000 (09:32 +0100)]
Merge pull request #5461 from jppelteret/fix_5455

Add header to tests using Sacado::Rad.

6 years agoUse [[deprecated]] if available 5459/head
Daniel Arndt [Mon, 13 Nov 2017 22:40:06 +0000 (23:40 +0100)]
Use [[deprecated]] if available

6 years agoAdd header to tests using Sacado::Rad. 5461/head
Jean-Paul Pelteret [Tue, 14 Nov 2017 06:35:45 +0000 (07:35 +0100)]
Add header to tests using Sacado::Rad.

For some older versions of Trilinos, the header for templated
Sacado::Rad numbers is missing from Sacado.hpp.

6 years agoMerge pull request #5385 from tjhei/prm_escape_latex
Wolfgang Bangerth [Tue, 14 Nov 2017 05:11:40 +0000 (22:11 -0700)]
Merge pull request #5385 from tjhei/prm_escape_latex

 escape characters in LaTeX format of ParameterHandler

6 years agoFix position of DEAL_II_DEPRECATED
Daniel Arndt [Mon, 13 Nov 2017 21:39:27 +0000 (22:39 +0100)]
Fix position of DEAL_II_DEPRECATED

6 years agofilter out binary data from XML output for some data_out tests 5443/head
Denis Davydov [Sun, 12 Nov 2017 19:47:02 +0000 (20:47 +0100)]
filter out binary data from XML output for some data_out tests

6 years agoMerge pull request #5452 from masterleinad/merge_grid_tools
Wolfgang Bangerth [Mon, 13 Nov 2017 17:13:31 +0000 (10:13 -0700)]
Merge pull request #5452 from masterleinad/merge_grid_tools

Merge parallel::GridTools into GridTools

6 years agocleanup a few data_out_base_vtu tests
Denis Davydov [Sun, 12 Nov 2017 19:20:05 +0000 (20:20 +0100)]
cleanup a few data_out_base_vtu tests

6 years agoUpdate changelog entries 5452/head
Daniel Arndt [Mon, 13 Nov 2017 14:56:33 +0000 (15:56 +0100)]
Update changelog entries

6 years agoReintroduce distributed/grid_tools.h for a deprecation warning
Daniel Arndt [Mon, 13 Nov 2017 14:51:39 +0000 (15:51 +0100)]
Reintroduce distributed/grid_tools.h for a deprecation warning

6 years agoMerge pull request #5447 from masterleinad/deprecate_vector_view
Wolfgang Bangerth [Mon, 13 Nov 2017 14:38:45 +0000 (07:38 -0700)]
Merge pull request #5447 from masterleinad/deprecate_vector_view

Deprecate VectorView

6 years agoMerge pull request #5453 from tjhei/petsc_lu_doc
Wolfgang Bangerth [Mon, 13 Nov 2017 14:35:26 +0000 (07:35 -0700)]
Merge pull request #5453 from tjhei/petsc_lu_doc

update documentation for PETSc PreconditionLU

6 years agoupdate documentation for PETSc PreconditionLU 5453/head
Timo Heister [Mon, 13 Nov 2017 14:05:16 +0000 (09:05 -0500)]
update documentation for PETSc PreconditionLU

6 years agoMerge distributed/grid_tools into grid/grid_tools
Daniel Arndt [Mon, 13 Nov 2017 11:37:24 +0000 (12:37 +0100)]
Merge distributed/grid_tools into grid/grid_tools

6 years agoRemove 'parallel' prefix in distributed/grid_tools
Daniel Arndt [Sun, 12 Nov 2017 20:35:40 +0000 (21:35 +0100)]
Remove 'parallel' prefix in distributed/grid_tools

6 years agoMerge pull request #5448 from bangerth/add-instantiation
Martin Kronbichler [Mon, 13 Nov 2017 13:33:35 +0000 (14:33 +0100)]
Merge pull request #5448 from bangerth/add-instantiation

Add a missing instantiation.

6 years agoMerge pull request #5444 from masterleinad/fix_interface_matrix_entry
Daniel Arndt [Mon, 13 Nov 2017 00:42:42 +0000 (01:42 +0100)]
Merge pull request #5444 from masterleinad/fix_interface_matrix_entry

Fix missing include file in multigrid/interface_matrix_entry_01

6 years agoMove deprecation declaration at the end 5447/head
Daniel Arndt [Sun, 12 Nov 2017 23:59:58 +0000 (00:59 +0100)]
Move deprecation declaration at the end

6 years agoAdd a test. 5448/head
Wolfgang Bangerth [Sun, 12 Nov 2017 23:30:29 +0000 (16:30 -0700)]
Add a test.

6 years agoAdd changelog entry.
Wolfgang Bangerth [Sun, 12 Nov 2017 23:13:41 +0000 (16:13 -0700)]
Add changelog entry.

6 years agoAdd missing instantiation of function.
Wolfgang Bangerth [Sun, 12 Nov 2017 23:13:34 +0000 (16:13 -0700)]
Add missing instantiation of function.

6 years agoDeprecate VectorView
Daniel Arndt [Sun, 12 Nov 2017 21:09:31 +0000 (22:09 +0100)]
Deprecate VectorView

6 years agoMerge pull request #5445 from drwells/update-gdbinit
Wolfgang Bangerth [Sun, 12 Nov 2017 21:11:19 +0000 (14:11 -0700)]
Merge pull request #5445 from drwells/update-gdbinit

Update the GDB pretty-printer.

6 years agoMerge pull request #5446 from drwells/convert-to-utf8
Wolfgang Bangerth [Sun, 12 Nov 2017 21:10:48 +0000 (14:10 -0700)]
Merge pull request #5446 from drwells/convert-to-utf8

Prefer UTF-8 to latin-1.

6 years agoPrefer UTF-8 to latin-1. 5446/head
David Wells [Sun, 12 Nov 2017 20:56:13 +0000 (15:56 -0500)]
Prefer UTF-8 to latin-1.

6 years agoUpdate the GDB pretty-printer. 5445/head
David Wells [Sun, 12 Nov 2017 20:52:15 +0000 (15:52 -0500)]
Update the GDB pretty-printer.

The data array variable was renamed from 'val' to 'values' in 2faae204c26.

6 years agoFix missing include filed in multigrid/interface_matrix_entry_01 5444/head
Daniel Arndt [Sun, 12 Nov 2017 20:35:40 +0000 (21:35 +0100)]
Fix missing include filed in multigrid/interface_matrix_entry_01

6 years agoMerge pull request #5442 from davydden/fix_illegal_character
David Wells [Sun, 12 Nov 2017 19:33:57 +0000 (14:33 -0500)]
Merge pull request #5442 from davydden/fix_illegal_character

fix illegal character (<F6> instead of oe)

6 years agofix illegal character (<F6> instead of oe) 5442/head
Denis Davydov [Sun, 12 Nov 2017 19:26:45 +0000 (20:26 +0100)]
fix illegal character (<F6> instead of oe)

7 years agoMerge pull request #5439 from kronbichler/extend_trilinos_direct_solver
Jean-Paul Pelteret [Fri, 10 Nov 2017 21:02:53 +0000 (22:02 +0100)]
Merge pull request #5439 from kronbichler/extend_trilinos_direct_solver

 Let Trilinos direct solver use given factorization with LA::distributed::Vector

7 years agomove to namespace 5385/head
Timo Heister [Fri, 10 Nov 2017 19:23:16 +0000 (14:23 -0500)]
move to namespace

7 years agoMerge pull request #5434 from tjhei/test_dos_2_unix
Timo Heister [Fri, 10 Nov 2017 18:03:17 +0000 (13:03 -0500)]
Merge pull request #5434 from tjhei/test_dos_2_unix

fix dos formatted files in contrib/utilities/indent

7 years agoMerge pull request #5380 from vishalkenchan/rol/vector_adaptor
Jean-Paul Pelteret [Fri, 10 Nov 2017 15:46:45 +0000 (16:46 +0100)]
Merge pull request #5380 from vishalkenchan/rol/vector_adaptor

Using Trilinos/ROL library

7 years agoAdd test. 5439/head
Martin Kronbichler [Fri, 10 Nov 2017 14:33:31 +0000 (15:33 +0100)]
Add test.

7 years agoChangelog
Martin Kronbichler [Fri, 10 Nov 2017 13:52:33 +0000 (14:52 +0100)]
Changelog

7 years agoEnable Trilinos direct solvers with LA::distributed::Vector.
Martin Kronbichler [Fri, 10 Nov 2017 13:50:09 +0000 (14:50 +0100)]
Enable Trilinos direct solvers with LA::distributed::Vector.

7 years agoadded rol tests 5380/head
vishalkenchan [Fri, 10 Nov 2017 09:15:36 +0000 (10:15 +0100)]
added rol tests

7 years agoadd a vector adaptor to use Trilinos/ROL library; added cmake variable DEAL_II_TRILIN...
vishalkenchan [Fri, 10 Nov 2017 09:15:12 +0000 (10:15 +0100)]
add a vector adaptor to use Trilinos/ROL library; added cmake variable DEAL_II_TRILINOS_WITH_ROL

7 years agofix dos formatted files in contrib/utilities/indent 5434/head
Timo Heister [Thu, 9 Nov 2017 18:58:51 +0000 (13:58 -0500)]
fix dos formatted files in contrib/utilities/indent

7 years agoMerge pull request #5408 from kronbichler/speedup_spherical_manifold
Martin Kronbichler [Thu, 9 Nov 2017 20:19:07 +0000 (21:19 +0100)]
Merge pull request #5408 from kronbichler/speedup_spherical_manifold

Speed up SphericalManifold::get_new_point

7 years agoMerge pull request #5433 from bangerth/fix-inst.in
Timo Heister [Thu, 9 Nov 2017 18:27:19 +0000 (13:27 -0500)]
Merge pull request #5433 from bangerth/fix-inst.in

Rename class groups in template-arguments.in.

7 years agoMerge pull request #5430 from bangerth/new-tests
Denis Davydov [Thu, 9 Nov 2017 17:30:45 +0000 (18:30 +0100)]
Merge pull request #5430 from bangerth/new-tests

Add tests for VectorTools::integrate_difference() using complex data types.

7 years agoRename class groups in template-arguments.in. 5433/head
Wolfgang Bangerth [Thu, 9 Nov 2017 15:08:54 +0000 (08:08 -0700)]
Rename class groups in template-arguments.in.

The previous name no longer adequately represented what these classes were. Fix this.

7 years agoMerge pull request #5428 from bangerth/set-perms
Timo Heister [Thu, 9 Nov 2017 16:06:42 +0000 (11:06 -0500)]
Merge pull request #5428 from bangerth/set-perms

Set file permissions in the indentation script.

7 years agoMerge pull request #5431 from bangerth/add-changelog
Denis Davydov [Thu, 9 Nov 2017 15:06:22 +0000 (16:06 +0100)]
Merge pull request #5431 from bangerth/add-changelog

Add a changelog entry for complex-valued vectors.

7 years agoAdd a changelog entry for complex-valued vectors. 5431/head
Wolfgang Bangerth [Thu, 9 Nov 2017 15:00:24 +0000 (08:00 -0700)]
Add a changelog entry for complex-valued vectors.

7 years agoAdd tests for VectorTools::integrate_difference() using complex data types. 5430/head
Wolfgang Bangerth [Thu, 9 Nov 2017 14:52:31 +0000 (07:52 -0700)]
Add tests for VectorTools::integrate_difference() using complex data types.

7 years agoMinor adjustments to one test.
Wolfgang Bangerth [Thu, 9 Nov 2017 14:52:03 +0000 (07:52 -0700)]
Minor adjustments to one test.

7 years agoMerge pull request #5419 from bangerth/more-complex
Martin Kronbichler [Thu, 9 Nov 2017 08:17:33 +0000 (09:17 +0100)]
Merge pull request #5419 from bangerth/more-complex

Allow outputting complex-valued data through DataOut.

7 years agoMerge pull request #5429 from bangerth/instantiations
Jean-Paul Pelteret [Thu, 9 Nov 2017 05:36:45 +0000 (06:36 +0100)]
Merge pull request #5429 from bangerth/instantiations

Instantiate some more functions for the codim-1 case.

7 years agoInstantiate some more functions for the codim-1 case. 5429/head
Wolfgang Bangerth [Thu, 9 Nov 2017 00:22:10 +0000 (17:22 -0700)]
Instantiate some more functions for the codim-1 case.

While there, also simplify the file slightly.

7 years agoSet file permissions in the indentation script. 5428/head
Wolfgang Bangerth [Wed, 8 Nov 2017 20:15:18 +0000 (13:15 -0700)]
Set file permissions in the indentation script.

7 years agoAdd more tests that check both real and complex-valued output at the same time. 5419/head
Wolfgang Bangerth [Wed, 8 Nov 2017 19:56:36 +0000 (12:56 -0700)]
Add more tests that check both real and complex-valued output at the same time.

7 years agoSimplify code a bit.
Wolfgang Bangerth [Wed, 8 Nov 2017 19:52:26 +0000 (12:52 -0700)]
Simplify code a bit.

7 years agoMerge pull request #5423 from drwells/fix-unity-build
Jean-Paul Pelteret [Wed, 8 Nov 2017 19:37:22 +0000 (20:37 +0100)]
Merge pull request #5423 from drwells/fix-unity-build

Disambiguate parallel::GridTools and GridTools.

7 years agoMerge pull request #5424 from bangerth/fix-test
Matthias Maier [Wed, 8 Nov 2017 17:46:01 +0000 (11:46 -0600)]
Merge pull request #5424 from bangerth/fix-test

Fix test.

7 years agoMerge pull request #5425 from bangerth/fix-line-endings
Matthias Maier [Wed, 8 Nov 2017 17:45:42 +0000 (11:45 -0600)]
Merge pull request #5425 from bangerth/fix-line-endings

Consistently use UNIX line endings.

7 years agoConsistently use UNIX line endings. 5425/head
Wolfgang Bangerth [Wed, 8 Nov 2017 17:42:04 +0000 (10:42 -0700)]
Consistently use UNIX line endings.

7 years agoConvert DOS to Unix line endings. 5424/head
Wolfgang Bangerth [Wed, 8 Nov 2017 17:31:47 +0000 (10:31 -0700)]
Convert DOS to Unix line endings.

7 years agoFix test output.
Wolfgang Bangerth [Wed, 8 Nov 2017 17:29:06 +0000 (10:29 -0700)]
Fix test output.

7 years agoMerge pull request #5391 from jppelteret/ad-product_types
Matthias Maier [Wed, 8 Nov 2017 17:27:55 +0000 (11:27 -0600)]
Merge pull request #5391 from jppelteret/ad-product_types

Implement more product types for AD numbers

7 years agoMerge pull request #5422 from tjhei/doxygen_deprecated
Wolfgang Bangerth [Wed, 8 Nov 2017 16:45:52 +0000 (09:45 -0700)]
Merge pull request #5422 from tjhei/doxygen_deprecated

doxygen: fix deprecated function signatures

7 years agoInclude Adol-C product types header in fe_values 5391/head
Jean-Paul Pelteret [Wed, 8 Nov 2017 16:36:08 +0000 (17:36 +0100)]
Include Adol-C product types header in fe_values

Fixes #5420

7 years agoDisambiguate parallel::GridTools and GridTools. 5423/head
David Wells [Wed, 8 Nov 2017 16:30:56 +0000 (11:30 -0500)]
Disambiguate parallel::GridTools and GridTools.

7 years agoImplement ProductType for Adol-C numbers
Jean-Paul Pelteret [Fri, 3 Nov 2017 18:56:53 +0000 (19:56 +0100)]
Implement ProductType for Adol-C numbers

7 years agoAdd support and implement ProductType for Trilinos Sacado::Rad numbers
Jean-Paul Pelteret [Fri, 3 Nov 2017 18:56:01 +0000 (19:56 +0100)]
Add support and implement ProductType for Trilinos Sacado::Rad numbers

7 years agoMerge pull request #5421 from jppelteret/fix_5420
Jean-Paul Pelteret [Wed, 8 Nov 2017 15:30:03 +0000 (16:30 +0100)]
Merge pull request #5421 from jppelteret/fix_5420

Fix expansion for Adol-C numbers

7 years agodoxygen: fix deprecatedfunction signatures 5422/head
Timo Heister [Wed, 8 Nov 2017 14:49:44 +0000 (09:49 -0500)]
doxygen: fix deprecatedfunction signatures

Deprecated functions show up with a trailing "1". Fix this.

Example: has_generalized_face_support_points() in http://www.dealii.org/developer/doxygen/deal.II/classFiniteElement.html

7 years agobreak
Timo Heister [Wed, 8 Nov 2017 14:31:16 +0000 (09:31 -0500)]
break

7 years agoupdate
Timo Heister [Wed, 8 Nov 2017 14:22:44 +0000 (09:22 -0500)]
update

7 years agoFix expansion for Adol-C numbers 5421/head
Jean-Paul Pelteret [Wed, 8 Nov 2017 13:40:40 +0000 (14:40 +0100)]
Fix expansion for Adol-C numbers


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