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https://gitweb.dealii.org/ - dealii.git/log
Wolfgang Bangerth [Tue, 21 Jan 2020 18:09:45 +0000 (11:09 -0700)]
Update the documentation of int_to_string() and to_string().
Timo Heister [Tue, 21 Jan 2020 15:20:35 +0000 (10:20 -0500)]
Merge pull request #9408 from drwells/fix-channel-doc-2
Clarify a channel limit.
David Wells [Tue, 21 Jan 2020 14:33:11 +0000 (09:33 -0500)]
Clarify a channel limit.
This is a bit tricky since the BlockVector needs channels 100 to 200, but the
class itself should only use 0 to 100.
Daniel Arndt [Tue, 21 Jan 2020 01:47:10 +0000 (20:47 -0500)]
Merge pull request #9401 from drwells/fix-channel-doc
Make channel limits consistent.
David Wells [Tue, 21 Jan 2020 01:01:23 +0000 (20:01 -0500)]
Merge pull request #9398 from simonsticko/fix_make_flux_sparsity_pattern_1D
Fix 1D-bug in one version of make_flux_sparsity_pattern
David Wells [Tue, 21 Jan 2020 01:01:11 +0000 (20:01 -0500)]
Merge pull request #9400 from drwells/use-std-to-string
Utilities::to_string -> std::to_string
David Wells [Mon, 20 Jan 2020 23:03:33 +0000 (18:03 -0500)]
Merge pull request #9404 from tjhei/ci_cxx11
CI: disable cxx14 for the serial linux build
David Wells [Mon, 20 Jan 2020 15:16:31 +0000 (10:16 -0500)]
Utilities::to_string -> std::to_string
None of these use the second arguments for padding so we might as well
use the standard library function.
Timo Heister [Mon, 20 Jan 2020 15:57:48 +0000 (10:57 -0500)]
CI: disable cxx14 for the serial linux build
David Wells [Mon, 20 Jan 2020 17:00:24 +0000 (12:00 -0500)]
Merge pull request #9403 from tjhei/readme_osx_github_actions
add github actions OSX to readme
David Wells [Mon, 20 Jan 2020 16:38:48 +0000 (11:38 -0500)]
Check the value of the communication channel.
The block vector class assumes it can use 100-199, where 200 is the
limit set by the Partitioner class.
Martin Kronbichler [Mon, 20 Jan 2020 16:50:39 +0000 (17:50 +0100)]
Merge pull request #9399 from masterleinad/fix_compiling_c++11
Fix compiling for C++11
Timo Heister [Mon, 20 Jan 2020 15:56:12 +0000 (10:56 -0500)]
add github actions OSX to readme
Daniel Arndt [Mon, 20 Jan 2020 14:29:27 +0000 (09:29 -0500)]
Fix compiling for C++11
Timo Heister [Mon, 20 Jan 2020 13:27:00 +0000 (08:27 -0500)]
Merge pull request #9397 from masterleinad/test_indentation_macos
Test indentation script on Mac OSX
Simon Sticko [Fri, 17 Jan 2020 16:59:07 +0000 (17:59 +0100)]
Fix 1D bug in one version of make_flux_sparsity_pattern.
When a neighbor has children, the function loops over each face and the
children of each face_iterator. But in 1D the number of children of a
face is always zero. The result is that flux-couplings are missed in
the 1D case when not all cells are on the same level.
Fix this by avoiding to iterate over the children of the face in 1D.
This is the same solutions that is already used in line 597 of
source/dofs/dof_tools_sparsity.cc.
Simon Sticko [Fri, 17 Jan 2020 16:34:48 +0000 (17:34 +0100)]
Instantiate hp version of make_flux_sparsity_pattern in 1D.
The version of make_flux_sparsity_pattern that takes cell and face
couplings is not instantiated for hp::DoFHandler in 1D. Trying to
compile code using it leads to a linking error. Instantiate the
function.
Simon Sticko [Fri, 17 Jan 2020 16:10:04 +0000 (17:10 +0100)]
Add test of make_flux_sparsity_pattern in 1D.
For the version of make_flux_sparsity_pattern that takes face and cell
couplings, add a 1D test that fails for both types of DoFHandler. For
dealii::DoFHandler it fails because there is a bug in 1D and for the hp
case it fails because make_flux_sparsity_pattern isn't instantiated in
the 1D case.
Daniel Arndt [Sun, 19 Jan 2020 19:54:39 +0000 (14:54 -0500)]
Test indentation script on Mac OSX
Daniel Arndt [Mon, 20 Jan 2020 02:40:51 +0000 (21:40 -0500)]
Merge pull request #9075 from luca-heltai/get-set-particle-positions
Get set particle positions
Daniel Arndt [Sun, 19 Jan 2020 20:10:10 +0000 (15:10 -0500)]
Merge pull request #9389 from peterrum/indexowner_division
Add assert to prevent floating point exception
Luca Heltai [Sun, 19 Jan 2020 18:20:25 +0000 (19:20 +0100)]
Addressed last comments.
Luca Heltai [Mon, 13 Jan 2020 20:35:39 +0000 (21:35 +0100)]
Updated documentation.
Luca Heltai [Mon, 13 Jan 2020 20:06:22 +0000 (21:06 +0100)]
Apply suggestions from code review
Co-Authored-By: Wolfgang Bangerth <bangerth@colostate.edu>
Luca Heltai [Fri, 10 Jan 2020 14:07:31 +0000 (15:07 +0100)]
Get and set particle positions.
Matthias Maier [Sun, 19 Jan 2020 17:41:09 +0000 (11:41 -0600)]
Merge pull request #9371 from luca-heltai/compress-decompress
New compress/decompress using gzip.
Daniel Arndt [Sun, 19 Jan 2020 17:14:42 +0000 (12:14 -0500)]
Merge pull request #9394 from krishnakumarg1984/step7_fix_tautology
fixes a tautology/word repetition in step-7 that was distracting
Krishnakumar Gopalakrishnan [Sun, 19 Jan 2020 14:16:17 +0000 (14:16 +0000)]
fixes a tautology/word repetition in step-7 that was distracting
Martin Kronbichler [Sun, 19 Jan 2020 12:12:56 +0000 (13:12 +0100)]
Merge pull request #9364 from peterrum/consensus_algo_rename_methods
Rename methods in ConsensusAlgorithmProcess
Peter Munch [Sun, 19 Jan 2020 07:29:19 +0000 (08:29 +0100)]
Add assert to prevent floating point exception
David Wells [Sun, 19 Jan 2020 03:24:03 +0000 (22:24 -0500)]
Merge pull request #9380 from bangerth/has_children
Replace !has_children() by is_active().
David Wells [Sun, 19 Jan 2020 03:23:26 +0000 (22:23 -0500)]
Merge pull request #9007 from peterrum/pft_copytria
Add copy_triangulation to parallel::fullydistributed::Triangulation
David Wells [Sun, 19 Jan 2020 02:39:30 +0000 (21:39 -0500)]
Merge pull request #9385 from masterleinad/fix_data_out_active_iterator_tests
Fix tests using DataOut::active_cell_iterator
David Wells [Sun, 19 Jan 2020 02:39:16 +0000 (21:39 -0500)]
Merge pull request #9373 from tjhei/tutorial_dependencies
remove unnecessary tutorial DAG edges
Peter Munch [Tue, 5 Nov 2019 21:52:40 +0000 (22:52 +0100)]
Add copy_triangulation to parallel::fullydistributed::Triangulation
Daniel Arndt [Sat, 18 Jan 2020 05:03:18 +0000 (23:03 -0600)]
Fix tests using DataOut::active_cell_iterator
Wolfgang Bangerth [Fri, 17 Jan 2020 18:17:18 +0000 (11:17 -0700)]
Replace !has_children() by is_active().
Luca Heltai [Fri, 17 Jan 2020 22:26:12 +0000 (23:26 +0100)]
Fix compilation when zlib is not available.
Timo Heister [Fri, 17 Jan 2020 21:21:02 +0000 (16:21 -0500)]
Merge pull request #9372 from masterleinad/fix_trailing_whitspace_script
Fix removing trailing whitespaces
Wolfgang Bangerth [Fri, 17 Jan 2020 21:17:01 +0000 (14:17 -0700)]
Merge pull request #9381 from bangerth/graph-2
Fix the fill color for the tutorial graph legend.
Wolfgang Bangerth [Fri, 17 Jan 2020 19:28:46 +0000 (12:28 -0700)]
Fix the fill color for the tutorial graph legend.
Timo Heister [Fri, 17 Jan 2020 20:53:41 +0000 (15:53 -0500)]
Merge pull request #9382 from bangerth/graph-3
Don't print lines connecting different parts of the legend.
Wolfgang Bangerth [Fri, 17 Jan 2020 20:33:27 +0000 (13:33 -0700)]
Merge pull request #9366 from krishnakumarg1984/step10_header_expl
In step-10, fixes explanation surrounding new header inclusion. fixes…
Wolfgang Bangerth [Fri, 17 Jan 2020 20:18:56 +0000 (13:18 -0700)]
Don't print lines connecting different parts of the legend.
Krishnakumar Gopalakrishnan [Fri, 17 Jan 2020 15:00:26 +0000 (15:00 +0000)]
In step-10, fixes explanation surrounding new header inclusion. fixes 9356
Wolfgang Bangerth [Fri, 17 Jan 2020 20:11:59 +0000 (13:11 -0700)]
Merge pull request #9375 from krishnakumarg1984/cleanup_dag
Remove some redundant edges from tutorial DAG
Krishnakumar Gopalakrishnan [Fri, 17 Jan 2020 17:16:26 +0000 (17:16 +0000)]
Remove some redundant edges from tutorial DAG
Wolfgang Bangerth [Fri, 17 Jan 2020 19:30:30 +0000 (12:30 -0700)]
Merge pull request #9330 from krishnakumarg1984/glossary_fix_coarsemesh
In glossary for coarse_mesh, use monospace font for refine_global call since doxygen wasn't already hyperlinking it anyway
Wolfgang Bangerth [Fri, 17 Jan 2020 16:56:43 +0000 (09:56 -0700)]
Merge pull request #9370 from bangerth/graph
More work on the tutorial graph
Timo Heister [Fri, 17 Jan 2020 16:37:29 +0000 (11:37 -0500)]
remove unnecessary tutorial DAG edges
Daniel Arndt [Fri, 17 Jan 2020 16:31:04 +0000 (09:31 -0700)]
Fix removing trailing whitespaces
Timo Heister [Fri, 17 Jan 2020 16:31:54 +0000 (11:31 -0500)]
Merge pull request #9365 from krishnakumarg1984/step10_fix_dependency
step-10 builds on step-7. see #9358
Luca Heltai [Fri, 17 Jan 2020 16:09:36 +0000 (17:09 +0100)]
New compress/decompress using gzip.
Wolfgang Bangerth [Wed, 15 Jan 2020 21:01:49 +0000 (14:01 -0700)]
Change the color of time dep. tutorials to a lighter blue.
Wolfgang Bangerth [Wed, 15 Jan 2020 20:52:30 +0000 (13:52 -0700)]
Give edges between same-kind tutorials a larger weight.
Timo Heister [Fri, 17 Jan 2020 16:04:36 +0000 (11:04 -0500)]
Merge pull request #9342 from bangerth/graph
Use the same color edges as for nodes in the tutorial graph.
Krishnakumar Gopalakrishnan [Fri, 17 Jan 2020 14:51:37 +0000 (14:51 +0000)]
step-10 builds on step-7. see 9358
Timo Heister [Fri, 17 Jan 2020 13:18:08 +0000 (08:18 -0500)]
Merge pull request #9352 from bangerth/is_active
Introduce CellAccessor::is_active().
Timo Heister [Fri, 17 Jan 2020 13:17:05 +0000 (08:17 -0500)]
Merge pull request #9359 from bangerth/tut
Work around a doxygen bug that triggers in step-10.
Daniel Arndt [Fri, 17 Jan 2020 06:37:39 +0000 (23:37 -0700)]
Merge pull request #9231 from kronbichler/inverse_mass_simplify
Simpler CellwiseInverseMassMatrix::apply() function
Peter Munch [Fri, 17 Jan 2020 06:17:34 +0000 (07:17 +0100)]
Rename methods in ConsensusAlgorithmProcess
Wolfgang Bangerth [Fri, 17 Jan 2020 00:55:08 +0000 (17:55 -0700)]
Work around a doxygen bug that triggers in step-10.
Daniel Arndt [Thu, 16 Jan 2020 20:25:26 +0000 (13:25 -0700)]
Merge pull request #9351 from masterleinad/remove_trailing_whitespace
Remove trailing whitespace
Timo Heister [Thu, 16 Jan 2020 19:11:29 +0000 (14:11 -0500)]
Merge pull request #9287 from bangerth/dataout
Replace the Dataout::first_cell/next_cell() mechanism
Wolfgang Bangerth [Thu, 16 Jan 2020 19:04:47 +0000 (12:04 -0700)]
Change all occurrences of CellAccessor::active() to CellAccessor::is_active().
Wolfgang Bangerth [Thu, 16 Jan 2020 18:41:40 +0000 (11:41 -0700)]
Add a changelog entry.
Wolfgang Bangerth [Thu, 16 Jan 2020 18:41:03 +0000 (11:41 -0700)]
Introduce CellAccessor::is_active().
The CellAccessor::active() function did not satisfy the
usual naming scheme of that class in which functions are called
CellAccessor::is_ghost(), CellAccessor::is_locally_owned(), etc. As a
consequence, there is now a new function CellAccessor::is_active(),
with the old function deprecated.
Daniel Arndt [Thu, 16 Jan 2020 17:17:46 +0000 (10:17 -0700)]
Add script
Daniel Arndt [Thu, 16 Jan 2020 16:15:44 +0000 (09:15 -0700)]
Remove trailing whitespace
Wolfgang Bangerth [Thu, 16 Jan 2020 16:26:36 +0000 (09:26 -0700)]
Observe that passing a lambda function to set_cell_selection() also works.
Wolfgang Bangerth [Wed, 15 Jan 2020 16:27:17 +0000 (09:27 -0700)]
Add a changelog entry.
Wolfgang Bangerth [Thu, 16 Jan 2020 15:09:35 +0000 (08:09 -0700)]
Add tests.
Wolfgang Bangerth [Sat, 11 Jan 2020 22:37:06 +0000 (15:37 -0700)]
Replace the first_cell/next_cell mechanism in DataOut.
Wolfgang Bangerth [Sat, 11 Jan 2020 22:35:05 +0000 (15:35 -0700)]
Replace a text description by a static_assert().
Daniel Arndt [Thu, 16 Jan 2020 15:45:43 +0000 (08:45 -0700)]
Merge pull request #9096 from tamiko/mg_output
cleanup typedefs in DataOut
Daniel Arndt [Thu, 16 Jan 2020 14:57:59 +0000 (07:57 -0700)]
Merge pull request #9348 from kronbichler/typo_doc
Fix typo in step-49 doc about gmsh
Daniel Arndt [Thu, 9 Jan 2020 19:50:45 +0000 (14:50 -0500)]
Fix test
Martin Kronbichler [Thu, 16 Jan 2020 07:44:15 +0000 (08:44 +0100)]
Fix typo in step-49 doc about gmsh
Martin Kronbichler [Thu, 16 Jan 2020 07:12:13 +0000 (08:12 +0100)]
Merge pull request #9335 from bangerth/49
Simplify description in step-49.
Martin Kronbichler [Thu, 16 Jan 2020 07:11:02 +0000 (08:11 +0100)]
Merge pull request #9249 from masterleinad/replace_more_threads_mutex
Replace Threads::mutex by std::mutex
Martin Kronbichler [Thu, 16 Jan 2020 07:09:12 +0000 (08:09 +0100)]
Merge pull request #9344 from bangerth/6
Talk about mesh quality in step-6.
Martin Kronbichler [Thu, 16 Jan 2020 07:06:38 +0000 (08:06 +0100)]
Merge pull request #9345 from bangerth/49-2
Clarify comments about distort_random() in step-49.
Daniel Arndt [Thu, 16 Jan 2020 06:39:59 +0000 (23:39 -0700)]
Merge pull request #9346 from peterrum/exception_fix_type
Fix input argument type of ExcFileNotOpen()
Peter Munch [Thu, 16 Jan 2020 06:30:59 +0000 (07:30 +0100)]
Fix input arguemnt type of ExcFileNotOpen()
Wolfgang Bangerth [Thu, 16 Jan 2020 01:21:49 +0000 (18:21 -0700)]
Clarify comments about distort_random() in step-49.
Wolfgang Bangerth [Thu, 16 Jan 2020 00:39:40 +0000 (17:39 -0700)]
Talk about mesh quality in step-6.
Timo Heister [Wed, 15 Jan 2020 22:35:58 +0000 (17:35 -0500)]
Merge pull request #9327 from bangerth/gmsh
Better document gmsh's features.
Wolfgang Bangerth [Wed, 15 Jan 2020 16:18:45 +0000 (09:18 -0700)]
Simplify description in step-49.
Wolfgang Bangerth [Wed, 15 Jan 2020 00:15:29 +0000 (17:15 -0700)]
Better document gmsh's features.
David Wells [Wed, 15 Jan 2020 21:15:25 +0000 (16:15 -0500)]
Merge pull request #9288 from krishnakumarg1984/krishna_constraints_doc_fix
Update constraints documentation module to reflect recent updates to step-6
David Wells [Wed, 15 Jan 2020 21:09:52 +0000 (16:09 -0500)]
Merge pull request #9337 from masterleinad/fix_some_coverity
Fix some coverity complains
David Wells [Wed, 15 Jan 2020 21:03:35 +0000 (16:03 -0500)]
Merge pull request #9328 from bangerth/write-svg
Fix the instantiations of GridOut::write_svg().
David Wells [Wed, 15 Jan 2020 20:57:45 +0000 (15:57 -0500)]
Merge pull request #9340 from krishnakumarg1984/step49_fixes
Lots of documentation fixes to Step-49 tutorial
Wolfgang Bangerth [Wed, 15 Jan 2020 20:21:31 +0000 (13:21 -0700)]
Use the same color edges as for nodes in the tutorial graph.
Krishnakumar Gopalakrishnan [Tue, 14 Jan 2020 18:05:30 +0000 (18:05 +0000)]
Lots of documentation fixes to Step-49 tutorial
aims to wrap create_coarse_grid function in monospace font
fixes a minor typo
trying to fix the monospace font of step-49.cc file
in step 49, simplify the boundary_count loop by directly using active_face_iterators
In step-49, updates the transform code to directly correspond 1:1 with the given math formula
semantic font use for code in step-49 results/extension
Fixes a documentation error. Move extract_boundary_mesh from GridTools to GridGenerator namespace in step-49
semantic font use for code in step-49 results/extension
Daniel Arndt [Wed, 15 Jan 2020 18:04:35 +0000 (11:04 -0700)]
Merge pull request #9272 from bangerth/deprecate
Make DoFTools::count_dofs_per_{component,block} return its data.
Krishnakumar Gopalakrishnan [Wed, 15 Jan 2020 11:51:35 +0000 (11:51 +0000)]
In glossary for coarse_mesh, use semantic (code) font for refine_global call since doxygen wasn't already hyperlinking it anyway
Wolfgang Bangerth [Wed, 15 Jan 2020 17:15:29 +0000 (10:15 -0700)]
Merge pull request #9300 from krishnakumarg1984/krishna_fix_step6_results
In step 6 results doc, move the header file inclusion sentence to reflect that we need it for Sparse_ILU and not Jacobi preconditioner
Daniel Arndt [Wed, 15 Jan 2020 16:52:53 +0000 (09:52 -0700)]
Merge pull request #9333 from bangerth/pre
Use @pre instead of @note in a number of places.
Daniel Arndt [Wed, 15 Jan 2020 16:14:00 +0000 (09:14 -0700)]
Fix some coverity complains
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