]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
7 years agoFix up 'the the ' in the documentation 4487/head
Daniel Arndt [Tue, 6 Jun 2017 11:50:56 +0000 (13:50 +0200)]
Fix up 'the the ' in the documentation

7 years agoMerge pull request #4450 from kronbichler/mapping_transform_R2U_performance
Wolfgang Bangerth [Mon, 5 Jun 2017 20:34:55 +0000 (14:34 -0600)]
Merge pull request #4450 from kronbichler/mapping_transform_R2U_performance

Performance improvement for MappingQ::transform_real_to_unit_cell

7 years agoAdd changelog 4450/head
Martin Kronbichler [Mon, 5 Jun 2017 14:48:36 +0000 (16:48 +0200)]
Add changelog

7 years agoAdd test
Martin Kronbichler [Mon, 5 Jun 2017 14:45:21 +0000 (16:45 +0200)]
Add test

7 years agoAdjust output on test.
Martin Kronbichler [Sat, 3 Jun 2017 14:56:26 +0000 (16:56 +0200)]
Adjust output on test.

The change in the algorithm resulted in picking another cell for points exactly on the interface between two (or more) cell.s

7 years agoFix bug in eulerian mapping regarding preservation of vertex locations
Martin Kronbichler [Sat, 3 Jun 2017 14:51:00 +0000 (16:51 +0200)]
Fix bug in eulerian mapping regarding preservation of vertex locations

7 years agoUse cheap guess in transfinite manifold
Martin Kronbichler [Sat, 3 Jun 2017 14:50:39 +0000 (16:50 +0200)]
Use cheap guess in transfinite manifold

7 years agoSimplify initial guess for Newton iteration of transform_real_to_unit_cell
Martin Kronbichler [Wed, 31 May 2017 10:39:07 +0000 (12:39 +0200)]
Simplify initial guess for Newton iteration of transform_real_to_unit_cell

7 years agoIntroduce function real_to_unit_cell_affine_approximation.
Martin Kronbichler [Sat, 3 Jun 2017 14:39:14 +0000 (16:39 +0200)]
Introduce function real_to_unit_cell_affine_approximation.

7 years agoMerge pull request #4484 from drwells/fix-petsc-bool
Denis Davydov [Mon, 5 Jun 2017 04:15:30 +0000 (06:15 +0200)]
Merge pull request #4484 from drwells/fix-petsc-bool

Remove usages of the deprecated PetscBooleanType.

7 years agoMerge pull request #4485 from bangerth/grammar-fix
Denis Davydov [Mon, 5 Jun 2017 04:13:49 +0000 (06:13 +0200)]
Merge pull request #4485 from bangerth/grammar-fix

Fix grammar in cmake error messages.

7 years agoFix grammar in cmake error messages. 4485/head
Wolfgang Bangerth [Mon, 5 Jun 2017 01:30:04 +0000 (19:30 -0600)]
Fix grammar in cmake error messages.

7 years agoRemove usages of the deprecated PetscBooleanType. 4484/head
David Wells [Sun, 4 Jun 2017 23:49:27 +0000 (19:49 -0400)]
Remove usages of the deprecated PetscBooleanType.

Followup to db66997e97: we should avoid using deprecated types in the library
and public headers.

7 years agoMerge pull request #4477 from bangerth/deprecate-prm-handler
David Wells [Sun, 4 Jun 2017 21:00:36 +0000 (17:00 -0400)]
Merge pull request #4477 from bangerth/deprecate-prm-handler

Deprecate ParameterHandler::print_parameters_section().

7 years agoMerge pull request #4480 from kronbichler/add_mapping_test
David Wells [Sun, 4 Jun 2017 19:21:29 +0000 (15:21 -0400)]
Merge pull request #4480 from kronbichler/add_mapping_test

Add test where inversion in real_to_unit_cell fails

7 years agoMerge pull request #4481 from drwells/remove-old-petsc-compatibility
Martin Kronbichler [Sun, 4 Jun 2017 06:50:00 +0000 (08:50 +0200)]
Merge pull request #4481 from drwells/remove-old-petsc-compatibility

Remove support for versions of PETSc before 3.3.0.

7 years agoRemove support for versions of PETSc before 3.3.0. 4481/head
David Wells [Sat, 3 Jun 2017 19:42:35 +0000 (15:42 -0400)]
Remove support for versions of PETSc before 3.3.0.

7 years agoMerge pull request #4479 from drwells/fix-absolute-links
Martin Kronbichler [Sat, 3 Jun 2017 19:45:47 +0000 (21:45 +0200)]
Merge pull request #4479 from drwells/fix-absolute-links

Make some documentation links relative.

7 years agoAdd test where inversion in real_to_unit_cell fails 4480/head
Martin Kronbichler [Sat, 3 Jun 2017 19:40:11 +0000 (21:40 +0200)]
Add test where inversion in real_to_unit_cell fails

7 years agoMerge pull request #4454 from masterleinad/remove_trilinos_vector_base
Daniel Arndt [Sat, 3 Jun 2017 18:45:07 +0000 (20:45 +0200)]
Merge pull request #4454 from masterleinad/remove_trilinos_vector_base

Remove TrilinosWrappers::VectorBase

7 years agoMake some documentation links relative. 4479/head
David Wells [Sat, 3 Jun 2017 18:18:57 +0000 (14:18 -0400)]
Make some documentation links relative.

The other tutorial programs use relative links in these cases.

7 years agoFix up trilinos_precondition.h 4454/head
Daniel Arndt [Sat, 3 Jun 2017 16:56:48 +0000 (18:56 +0200)]
Fix up trilinos_precondition.h

7 years agoFix up blank spaces after 'operator'
Daniel Arndt [Sat, 3 Jun 2017 14:56:34 +0000 (16:56 +0200)]
Fix up blank spaces after 'operator'

7 years agoRemove TrilinosWrappers::VectorBase
Daniel Arndt [Tue, 30 May 2017 22:25:23 +0000 (00:25 +0200)]
Remove TrilinosWrappers::VectorBase

7 years agoMerge pull request #4469 from bangerth/update-prm-handler
David Wells [Sat, 3 Jun 2017 16:52:11 +0000 (12:52 -0400)]
Merge pull request #4469 from bangerth/update-prm-handler

Minor cleanups in ParameterHandler.

7 years agoMerge pull request #4466 from bangerth/fe-clone
David Wells [Sat, 3 Jun 2017 13:51:00 +0000 (09:51 -0400)]
Merge pull request #4466 from bangerth/fe-clone

Let FE::clone() return a std::unique_ptr.

7 years agoAdd a changelog entry. 4477/head
Wolfgang Bangerth [Fri, 2 Jun 2017 22:06:37 +0000 (16:06 -0600)]
Add a changelog entry.

7 years agoWrap comments in ParameterHandler::print_parameters_section().
Wolfgang Bangerth [Fri, 2 Jun 2017 22:05:43 +0000 (16:05 -0600)]
Wrap comments in ParameterHandler::print_parameters_section().

7 years agoDeprecate ParameterHandler::print_parameters_section().
Wolfgang Bangerth [Fri, 2 Jun 2017 22:05:23 +0000 (16:05 -0600)]
Deprecate ParameterHandler::print_parameters_section().

7 years agoMerge pull request #4475 from bangerth/fix-test
Matthias Maier [Fri, 2 Jun 2017 21:02:27 +0000 (16:02 -0500)]
Merge pull request #4475 from bangerth/fix-test

Add secondary output for one test.

7 years agoAdd secondary output for one test. 4475/head
Wolfgang Bangerth [Fri, 2 Jun 2017 20:34:58 +0000 (14:34 -0600)]
Add secondary output for one test.

The test takes one more or less iteration, depending on the system.
So add a secondary output.

7 years agoMerge pull request #4472 from kronbichler/fix_grid_tools_regularize_test
Wolfgang Bangerth [Fri, 2 Jun 2017 19:31:28 +0000 (13:31 -0600)]
Merge pull request #4472 from kronbichler/fix_grid_tools_regularize_test

Fix GridTools::regularize_mesh test output

7 years agoFix GridTools::regularize_mesh test output 4472/head
Martin Kronbichler [Fri, 2 Jun 2017 18:54:48 +0000 (20:54 +0200)]
Fix GridTools::regularize_mesh test output

7 years agoMerge pull request #4470 from bangerth/indent
Daniel Arndt [Fri, 2 Jun 2017 18:18:19 +0000 (20:18 +0200)]
Merge pull request #4470 from bangerth/indent

Change some indentation oddities.

7 years agoChange some indentation oddities. 4470/head
Wolfgang Bangerth [Fri, 2 Jun 2017 16:32:36 +0000 (10:32 -0600)]
Change some indentation oddities.

The majority of these are related to space before comma. I did all of
this by first running astyle 3.0.1 to see what it changes, and then
running astyle 2.04 as usual again. 3.0.1 fixes up a few oddities
that 2.04 doesn't undo, and most of these are probably worthwhile
keeping.

There are some corner cases where we had purposefully aligned commas
with leading spaces, and one could consider not making this change,
or updating it by hand. But I don't feel strongly enough about
this to really go to lengths here.

7 years agoRemove more outdated comments. 4469/head
Wolfgang Bangerth [Fri, 2 Jun 2017 16:14:52 +0000 (10:14 -0600)]
Remove more outdated comments.

7 years agoSimplify control flow a bit.
Wolfgang Bangerth [Fri, 2 Jun 2017 16:11:52 +0000 (10:11 -0600)]
Simplify control flow a bit.

7 years agoRemove an outdated comment.
Wolfgang Bangerth [Fri, 2 Jun 2017 16:11:21 +0000 (10:11 -0600)]
Remove an outdated comment.

7 years agoAdd changelog entry. 4466/head
Wolfgang Bangerth [Fri, 2 Jun 2017 14:56:11 +0000 (08:56 -0600)]
Add changelog entry.

7 years agoMerge pull request #4467 from kronbichler/fix_refinement_listeners
Daniel Arndt [Fri, 2 Jun 2017 14:03:49 +0000 (16:03 +0200)]
Merge pull request #4467 from kronbichler/fix_refinement_listeners

Adjust test to clear signal at tria destructor

7 years agoAdjust refinement listener to raising the clear signal at tria destructor 4467/head
Martin Kronbichler [Fri, 2 Jun 2017 12:02:08 +0000 (14:02 +0200)]
Adjust refinement listener to raising the clear signal at tria destructor

7 years agoMerge pull request #4356 from masterleinad/remove_deprecated_serial_trilinos_vectors
Martin Kronbichler [Fri, 2 Jun 2017 08:25:58 +0000 (10:25 +0200)]
Merge pull request #4356 from masterleinad/remove_deprecated_serial_trilinos_vectors

Remove deprecated serial TrilinosWrappers vectors

7 years agoMerge pull request #4463 from masterleinad/fix-explicit-instantiation-warning
Martin Kronbichler [Fri, 2 Jun 2017 06:21:02 +0000 (08:21 +0200)]
Merge pull request #4463 from masterleinad/fix-explicit-instantiation-warning

Allow using VectorTools::subtract_mean_value for all distributed vector classes

7 years agoMerge pull request #4464 from kronbichler/master
Martin Kronbichler [Fri, 2 Jun 2017 06:20:22 +0000 (08:20 +0200)]
Merge pull request #4464 from kronbichler/master

Fix bug introduced in rebase of transfinite manifold commit

7 years agoLet FE::clone() return a std::unique_ptr.
Wolfgang Bangerth [Thu, 1 Jun 2017 21:11:58 +0000 (15:11 -0600)]
Let FE::clone() return a std::unique_ptr.

7 years agoAllow using VectorTools::subtract_mean_value for all distributed vector classes 4463/head
Daniel Arndt [Thu, 1 Jun 2017 15:57:22 +0000 (17:57 +0200)]
Allow using VectorTools::subtract_mean_value for all distributed vector classes

7 years agoMerge pull request #4465 from bangerth/document-minmaxavg
Daniel Arndt [Thu, 1 Jun 2017 21:29:06 +0000 (23:29 +0200)]
Merge pull request #4465 from bangerth/document-minmaxavg

Better document Utilities::MPI::MinMaxAvg.

7 years agoFix documentation TrilinosWrappers::SparseMatrix 4356/head
Daniel Arndt [Thu, 1 Jun 2017 16:57:12 +0000 (18:57 +0200)]
Fix documentation TrilinosWrappers::SparseMatrix

7 years agoMerge pull request #4447 from bangerth/cone-normal
Martin Kronbichler [Thu, 1 Jun 2017 19:47:52 +0000 (21:47 +0200)]
Merge pull request #4447 from bangerth/cone-normal

Add ConeBoundary::normal_vector().

7 years agoFix one more typo in documentation. 4464/head
Martin Kronbichler [Thu, 1 Jun 2017 19:21:08 +0000 (21:21 +0200)]
Fix one more typo in documentation.

7 years agoBetter document Utilities::MPI::MinMaxAvg. 4465/head
Wolfgang Bangerth [Thu, 1 Jun 2017 19:27:41 +0000 (13:27 -0600)]
Better document Utilities::MPI::MinMaxAvg.

7 years agoFix bug introduced by transfinite manifold commit.
Martin Kronbichler [Thu, 1 Jun 2017 19:15:57 +0000 (21:15 +0200)]
Fix bug introduced by transfinite manifold commit.

7 years agoFix doxygen problem. Improve documentation.
Martin Kronbichler [Thu, 1 Jun 2017 19:15:33 +0000 (21:15 +0200)]
Fix doxygen problem. Improve documentation.

7 years agoDon't use TrilinosWrappers::VectorBase anymore
Daniel Arndt [Tue, 30 May 2017 22:01:31 +0000 (00:01 +0200)]
Don't use TrilinosWrappers::VectorBase anymore

7 years agoFix comments in the tests to reference TrilinosWrappers::MPI::Vector
Daniel Arndt [Sat, 27 May 2017 22:40:03 +0000 (00:40 +0200)]
Fix comments in the tests to reference TrilinosWrappers::MPI::Vector

7 years agoAdd changelog entry
Daniel Arndt [Mon, 8 May 2017 22:04:14 +0000 (00:04 +0200)]
Add changelog entry

7 years agoRemove deprecated serial Trilinos vectors from examples
Daniel Arndt [Mon, 8 May 2017 21:31:16 +0000 (23:31 +0200)]
Remove deprecated serial Trilinos vectors from examples

7 years agoRemove deprecated serial Trilinos vectors from test suite
Daniel Arndt [Mon, 8 May 2017 21:30:11 +0000 (23:30 +0200)]
Remove deprecated serial Trilinos vectors from test suite

7 years agoRemove deprecated serial Trilinos vectors
Daniel Arndt [Mon, 8 May 2017 21:28:53 +0000 (23:28 +0200)]
Remove deprecated serial Trilinos vectors

7 years agoMerge pull request #4459 from kronbichler/fix_tria_signals
Martin Kronbichler [Thu, 1 Jun 2017 16:38:45 +0000 (18:38 +0200)]
Merge pull request #4459 from kronbichler/fix_tria_signals

Also clear triangulation signals on destruction

7 years agoAlso clear triangulation signals on destruction 4459/head
Martin Kronbichler [Thu, 1 Jun 2017 13:11:17 +0000 (15:11 +0200)]
Also clear triangulation signals on destruction

7 years agoMerge pull request #4460 from masterleinad/fix_indent_template-arguments
Daniel Arndt [Thu, 1 Jun 2017 16:16:59 +0000 (18:16 +0200)]
Merge pull request #4460 from masterleinad/fix_indent_template-arguments

Fix indentation in template-arguments.in

7 years agoMerge pull request #4461 from kronbichler/master
David Wells [Thu, 1 Jun 2017 15:27:27 +0000 (11:27 -0400)]
Merge pull request #4461 from kronbichler/master

Move changelog entry to major

7 years agoMove changelog entry to major 4461/head
Martin Kronbichler [Thu, 1 Jun 2017 15:23:27 +0000 (17:23 +0200)]
Move changelog entry to major

7 years agoMerge pull request #4456 from tamiko/fix_timer_test
Matthias Maier [Thu, 1 Jun 2017 15:06:51 +0000 (10:06 -0500)]
Merge pull request #4456 from tamiko/fix_timer_test

Testsuite: fix base/timer

7 years agoTestsuite: fix typo 4456/head
Matthias Maier [Thu, 1 Jun 2017 15:06:09 +0000 (10:06 -0500)]
Testsuite: fix typo

7 years agoFix indentation in template-arguments.in 4460/head
Daniel Arndt [Thu, 1 Jun 2017 14:56:54 +0000 (16:56 +0200)]
Fix indentation in template-arguments.in

7 years agoMerge pull request #4404 from kronbichler/transfinite_manifold
Martin Kronbichler [Thu, 1 Jun 2017 14:16:56 +0000 (16:16 +0200)]
Merge pull request #4404 from kronbichler/transfinite_manifold

Transfinite interpolation manifold implementation

7 years agoAvoid division by zero. 4404/head
Martin Kronbichler [Thu, 1 Jun 2017 14:09:03 +0000 (16:09 +0200)]
Avoid division by zero.

7 years agoAdd changelog
Martin Kronbichler [Thu, 1 Jun 2017 08:43:39 +0000 (10:43 +0200)]
Add changelog

7 years agoTransfinite interpolation manifold.
Martin Kronbichler [Thu, 18 May 2017 16:49:10 +0000 (18:49 +0200)]
Transfinite interpolation manifold.

Added tests.
Adjusted division by zero in MappingQGeneric.
Disable using additional points on TransfiniteInterpolationManifold

7 years agoMerge pull request #4449 from tamiko/fix_timer_03_test
Martin Kronbichler [Thu, 1 Jun 2017 12:09:54 +0000 (14:09 +0200)]
Merge pull request #4449 from tamiko/fix_timer_03_test

Tests: Make base/timer_03 test more robust

7 years agoAdd a testcase. 4447/head
Wolfgang Bangerth [Tue, 30 May 2017 22:00:46 +0000 (16:00 -0600)]
Add a testcase.

7 years agoTestsuite: fix base/timer
Matthias Maier [Wed, 31 May 2017 16:50:04 +0000 (11:50 -0500)]
Testsuite: fix base/timer

 - comparing concurrent timer runs on SMP machines with overclocking is
   useless

 - test the whole timer interface for consistency instead

7 years agoTestsuite: Reindent base/timer_03 to make astyle happy 4449/head
Matthias Maier [Wed, 31 May 2017 16:30:45 +0000 (11:30 -0500)]
Testsuite: Reindent base/timer_03 to make astyle happy

7 years agoMerge pull request #4452 from bangerth/fix-typo
Bruno Turcksin [Wed, 31 May 2017 15:49:19 +0000 (11:49 -0400)]
Merge pull request #4452 from bangerth/fix-typo

Fix a grammar error.

7 years agoFix a grammar error. 4452/head
Professor E. G. Puckett [Wed, 31 May 2017 15:43:53 +0000 (09:43 -0600)]
Fix a grammar error.

7 years agoMerge pull request #4448 from bangerth/set-flags
Bruno Turcksin [Wed, 31 May 2017 12:29:50 +0000 (08:29 -0400)]
Merge pull request #4448 from bangerth/set-flags

Fix DataOutInterface::set_flags() for GnuplotFlags.

7 years agoTests: Make base/timer_03 test more robust
Matthias Maier [Wed, 31 May 2017 09:20:43 +0000 (04:20 -0500)]
Tests: Make base/timer_03 test more robust

Closes #4439

7 years agoMerge pull request #4446 from tamiko/fix_feature_config
Denis Davydov [Wed, 31 May 2017 05:55:57 +0000 (07:55 +0200)]
Merge pull request #4446 from tamiko/fix_feature_config

CMake: Fix path to deal.IIFeatureConfig.cmake

7 years agoAdd a test. 4448/head
Wolfgang Bangerth [Tue, 30 May 2017 23:52:33 +0000 (17:52 -0600)]
Add a test.

7 years agoAdd a changelog entry.
Wolfgang Bangerth [Tue, 30 May 2017 23:52:18 +0000 (17:52 -0600)]
Add a changelog entry.

7 years agoFix DataOutInterface::set_flags() for GnuplotFlags.
Wolfgang Bangerth [Tue, 30 May 2017 23:51:14 +0000 (17:51 -0600)]
Fix DataOutInterface::set_flags() for GnuplotFlags.

7 years agoAdd ConeBoundary::normal_vector().
anne-glerum [Tue, 30 May 2017 22:00:31 +0000 (16:00 -0600)]
Add ConeBoundary::normal_vector().

7 years agoCMake: Fix path to deal.IIFeatureConfig.cmake 4446/head
Matthias Maier [Tue, 30 May 2017 13:07:14 +0000 (08:07 -0500)]
CMake: Fix path to deal.IIFeatureConfig.cmake

7 years agoMerge pull request #4444 from davydden/gmg_clear
Denis Davydov [Tue, 30 May 2017 12:19:26 +0000 (14:19 +0200)]
Merge pull request #4444 from davydden/gmg_clear

add mg::Matrix::reset() and MGCoarseGridApplySmoother::clear()

7 years agoadd mg::Matrix::reset() and MGCoarseGridApplySmoother::clear() 4444/head
Denis Davydov [Tue, 30 May 2017 09:42:09 +0000 (11:42 +0200)]
add mg::Matrix::reset() and MGCoarseGridApplySmoother::clear()

7 years agoMerge pull request #4437 from davydden/feature_info
Denis Davydov [Mon, 29 May 2017 20:15:33 +0000 (22:15 +0200)]
Merge pull request #4437 from davydden/feature_info

add deal.IIFeatureConfig.cmake which contains detailed info about con…

7 years agonewlines 4437/head
Denis Davydov [Mon, 29 May 2017 15:53:48 +0000 (17:53 +0200)]
newlines

7 years agoadd deal.IIFeatureConfig.cmake which contains detailed info about configured features
Denis Davydov [Mon, 29 May 2017 09:39:08 +0000 (11:39 +0200)]
add deal.IIFeatureConfig.cmake which contains detailed info about configured features

7 years agoMerge pull request #4438 from kronbichler/reduce_size_trilinos_test
Matthias Maier [Mon, 29 May 2017 13:34:44 +0000 (08:34 -0500)]
Merge pull request #4438 from kronbichler/reduce_size_trilinos_test

Reduce size of Trilinos preconditioner test

7 years agoMerge pull request #4435 from kronbichler/augment_documentation_fe_evaluation_2
Martin Kronbichler [Mon, 29 May 2017 11:48:19 +0000 (13:48 +0200)]
Merge pull request #4435 from kronbichler/augment_documentation_fe_evaluation_2

Finalize FEEvaluation documentation update from #4431

7 years agoReduce size of Trilinos preconditioner test 4438/head
Martin Kronbichler [Mon, 29 May 2017 11:01:37 +0000 (13:01 +0200)]
Reduce size of Trilinos preconditioner test

7 years agoMerge pull request #4436 from jppelteret/update_tests_4427
Martin Kronbichler [Mon, 29 May 2017 10:52:14 +0000 (12:52 +0200)]
Merge pull request #4436 from jppelteret/update_tests_4427

Reduce computation time of step-18 based tests

7 years agoFinalize FEEvaluation documentation update from #4431 4435/head
Martin Kronbichler [Mon, 29 May 2017 08:22:42 +0000 (10:22 +0200)]
Finalize FEEvaluation documentation update from #4431

7 years agoReduce computation time of step-18 based tests 4436/head
Jean-Paul Pelteret [Mon, 29 May 2017 08:34:56 +0000 (10:34 +0200)]
Reduce computation time of step-18 based tests

7 years agoMerge pull request #4422 from drwells/add-trilinos-index-access
Martin Kronbichler [Mon, 29 May 2017 07:51:04 +0000 (09:51 +0200)]
Merge pull request #4422 from drwells/add-trilinos-index-access

Move Trilinos index functions into a new header file.

7 years agoMerge pull request #4433 from drwells/fix-task_09-2
Wolfgang Bangerth [Mon, 29 May 2017 02:42:54 +0000 (20:42 -0600)]
Merge pull request #4433 from drwells/fix-task_09-2

Clean up task_09 a bit.

7 years agoMove Trilinos index functions into a new header file. 4422/head
David Wells [Sat, 27 May 2017 21:56:09 +0000 (17:56 -0400)]
Move Trilinos index functions into a new header file.

7 years agoMerge pull request #4428 from tamiko/remove_build_tests
David Wells [Mon, 29 May 2017 02:01:06 +0000 (22:01 -0400)]
Merge pull request #4428 from tamiko/remove_build_tests

Tests: Remove build_tests/ category


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