]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
4 years agoFix some more doxygen issues. 10040/head
David Wells [Tue, 5 May 2020 19:06:58 +0000 (15:06 -0400)]
Fix some more doxygen issues.

1. I now get a warning about paper sizes with doxygen 1.8.18:

warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value
Using the default: a4!

   Get around this by just using a4.

2. My LaTeX distribution already defines vcentcolon, so rename our own version
   to dealvcentcolon to preserve compatibility with older tex distributions.

3. Use mathrm instead of text to get underscores to work correctly with
   backslashes with both MathJax and LaTeX. This is the solution we use
   elsewhere in the library.

4 years agoMerge pull request #9391 from peterrum/pft_settings
Luca Heltai [Tue, 5 May 2020 13:09:58 +0000 (15:09 +0200)]
Merge pull request #9391 from peterrum/pft_settings

Refactor settings of p:f:t

4 years agoMerge pull request #9847 from peterrum/nonconti_update_ghost_values
Martin Kronbichler [Tue, 5 May 2020 10:54:47 +0000 (12:54 +0200)]
Merge pull request #9847 from peterrum/nonconti_update_ghost_values

Rename NoncontiguousPartitioner::update_values()

4 years agoMerge pull request #9998 from bangerth/discrete-time
Luca Heltai [Tue, 5 May 2020 07:57:56 +0000 (09:57 +0200)]
Merge pull request #9998 from bangerth/discrete-time

Minor updates to the DiscreteTime class documentation.

4 years agoMerge pull request #10032 from masterleinad/suppres_more_tbb
Wolfgang Bangerth [Tue, 5 May 2020 03:33:53 +0000 (05:33 +0200)]
Merge pull request #10032 from masterleinad/suppres_more_tbb

Suppress more TBB warnings

4 years agoSuppress more TBB warnings 10032/head
Daniel Arndt [Tue, 5 May 2020 01:49:15 +0000 (21:49 -0400)]
Suppress more TBB warnings

4 years agoIntroduce MeshSmoothing in TriangulationDescription::Description 9391/head
Peter Munch [Sun, 19 Jan 2020 10:23:02 +0000 (11:23 +0100)]
Introduce MeshSmoothing in TriangulationDescription::Description

4 years agoMerge pull request #10031 from tcclevenger/step-63-format
Wolfgang Bangerth [Mon, 4 May 2020 20:32:20 +0000 (22:32 +0200)]
Merge pull request #10031 from tcclevenger/step-63-format

Small formatting error

4 years agosect4 -> sect3 10031/head
tcclevenger [Mon, 4 May 2020 20:10:23 +0000 (16:10 -0400)]
sect4 -> sect3

4 years agoRename NoncontiguousPartitioner::uptate_values() 9847/head
Peter Munch [Tue, 7 Apr 2020 08:47:05 +0000 (10:47 +0200)]
Rename NoncontiguousPartitioner::uptate_values()

4 years agoMerge pull request #9991 from dougshidong/create_evenly_distributed_partitioning
Martin Kronbichler [Mon, 4 May 2020 19:04:46 +0000 (21:04 +0200)]
Merge pull request #9991 from dougshidong/create_evenly_distributed_partitioning

Add Utilities::MPI::create_evenly_distributed_partitioning()

4 years agoMerge pull request #10029 from masterleinad/fix_c++20_
Timo Heister [Mon, 4 May 2020 17:47:09 +0000 (13:47 -0400)]
Merge pull request #10029 from masterleinad/fix_c++20_

Fix C++20 warnings and errors

4 years agoAvoid deprecated implicit this capture 10029/head
Daniel Arndt [Mon, 4 May 2020 14:20:30 +0000 (10:20 -0400)]
Avoid deprecated implicit this capture

4 years agoAvoid volatile assignment in TBB
Daniel Arndt [Mon, 4 May 2020 14:19:35 +0000 (10:19 -0400)]
Avoid volatile assignment in TBB

4 years agoAvoid allocator::pointer removed in C++20 in Boost
Daniel Arndt [Mon, 4 May 2020 14:19:01 +0000 (10:19 -0400)]
Avoid allocator::pointer removed in C++20 in Boost

4 years agoAdd U::MPI::create_evenly_distributed_partitioning 9991/head
Doug Shi-Dong [Thu, 30 Apr 2020 00:09:18 +0000 (20:09 -0400)]
Add U::MPI::create_evenly_distributed_partitioning

4 years agoRename test output file of mpi_create_partitioning
Doug Shi-Dong [Fri, 1 May 2020 03:35:31 +0000 (23:35 -0400)]
Rename test output file of mpi_create_partitioning

As per
https://github.com/dealii/dealii/pull/9991#discussion_r418361364

4 years agoPass arg by value in create_ascending_partitioning
Doug Shi-Dong [Fri, 1 May 2020 03:32:53 +0000 (23:32 -0400)]
Pass arg by value in create_ascending_partitioning

As per
https://github.com/dealii/dealii/pull/9991#issuecomment-622199929.

4 years agoMerge pull request #10026 from masterleinad/avoid_complex_fabs
Martin Kronbichler [Sun, 3 May 2020 20:43:15 +0000 (22:43 +0200)]
Merge pull request #10026 from masterleinad/avoid_complex_fabs

Avoid using fabs for std::complex

4 years agoMerge pull request #10024 from masterleinad/fix_clang_warnings
Timo Heister [Sun, 3 May 2020 20:02:37 +0000 (16:02 -0400)]
Merge pull request #10024 from masterleinad/fix_clang_warnings

Fix some clang-10 warnings

4 years agoAvoid using fabs for std::complex 10026/head
Daniel Arndt [Sun, 3 May 2020 14:58:33 +0000 (10:58 -0400)]
Avoid using fabs for std::complex

4 years agoMerge pull request #10025 from kronbichler/extend_mf_laplace_coefficient
Daniel Arndt [Sun, 3 May 2020 12:56:43 +0000 (08:56 -0400)]
Merge pull request #10025 from kronbichler/extend_mf_laplace_coefficient

4 years agoSimplify logfile setup in some tests 10025/head
Martin Kronbichler [Sun, 3 May 2020 09:07:30 +0000 (11:07 +0200)]
Simplify logfile setup in some tests

4 years agoChangelog
Martin Kronbichler [Sun, 3 May 2020 09:07:07 +0000 (11:07 +0200)]
Changelog

4 years agoTest case
Martin Kronbichler [Sun, 3 May 2020 09:06:55 +0000 (11:06 +0200)]
Test case

4 years agoImplement cell-wise variable coefficient in MF::LaplaceOperator
Martin Kronbichler [Sun, 3 May 2020 09:06:16 +0000 (11:06 +0200)]
Implement cell-wise variable coefficient in MF::LaplaceOperator

4 years agoMerge pull request #10022 from tamiko/fix_a_test_1
Martin Kronbichler [Sun, 3 May 2020 05:55:49 +0000 (07:55 +0200)]
Merge pull request #10022 from tamiko/fix_a_test_1

Test: adjust iteration count in ginkgo test

4 years agoMerge pull request #10020 from bangerth/include
Martin Kronbichler [Sun, 3 May 2020 05:54:25 +0000 (07:54 +0200)]
Merge pull request #10020 from bangerth/include

Remove an unnecessary include file.

4 years agoMerge pull request #10019 from bangerth/fix-test
Martin Kronbichler [Sun, 3 May 2020 05:53:41 +0000 (07:53 +0200)]
Merge pull request #10019 from bangerth/fix-test

Fix a test by using the stream output precision.

4 years agoFix warning about copying in range-based for loop 10024/head
Daniel Arndt [Sun, 3 May 2020 03:54:42 +0000 (23:54 -0400)]
Fix warning about copying in range-based for loop

4 years agoFix warning about default constructors and default assignment operators
Daniel Arndt [Sun, 3 May 2020 03:53:58 +0000 (23:53 -0400)]
Fix warning about default constructors and default assignment operators

4 years agoSilence conversion warning in bundled UMFPACK
Daniel Arndt [Sun, 3 May 2020 03:52:43 +0000 (23:52 -0400)]
Silence conversion warning in bundled UMFPACK

4 years agoTest: adjust iteration count in ginkgo test 10022/head
Matthias Maier [Sun, 3 May 2020 00:39:10 +0000 (19:39 -0500)]
Test: adjust iteration count in ginkgo test

4 years agoMerge pull request #10010 from rezarastak/projection_test
Wolfgang Bangerth [Sat, 2 May 2020 23:03:48 +0000 (01:03 +0200)]
Merge pull request #10010 from rezarastak/projection_test

Test for project_onto_orthogonal_tensors improved

4 years agoRemove an unnecessary include file. 10020/head
Wolfgang Bangerth [Sat, 2 May 2020 23:00:40 +0000 (17:00 -0600)]
Remove an unnecessary include file.

Specifically, vector.h doesn't reference LogStream or deallog and so doesn't need
the include file.

4 years agoFix a test by using the stream output precision. 10019/head
Wolfgang Bangerth [Sat, 2 May 2020 22:42:46 +0000 (16:42 -0600)]
Fix a test by using the stream output precision.

4 years agoMinor updates to the DiscreteTime class documentation. 9998/head
Wolfgang Bangerth [Fri, 1 May 2020 03:19:01 +0000 (21:19 -0600)]
Minor updates to the DiscreteTime class documentation.

4 years agoMerge pull request #10015 from masterleinad/suppress_tbb_warning
Timo Heister [Sat, 2 May 2020 21:23:16 +0000 (17:23 -0400)]
Merge pull request #10015 from masterleinad/suppress_tbb_warning

Suppress warning that tbb/task.h is deprecated

4 years agoMerge pull request #10014 from kronbichler/fix_step-67_table
Wolfgang Bangerth [Sat, 2 May 2020 18:33:49 +0000 (20:33 +0200)]
Merge pull request #10014 from kronbichler/fix_step-67_table

[step-67] Fix a wrong number in program output

4 years agoSuppress warning that tbb/task.h is deprecated 10015/head
Daniel Arndt [Sat, 2 May 2020 16:14:02 +0000 (12:14 -0400)]
Suppress warning that tbb/task.h is deprecated

4 years ago[step-67] Fix a wrong number in result table 10014/head
Martin Kronbichler [Sat, 2 May 2020 15:20:17 +0000 (17:20 +0200)]
[step-67] Fix a wrong number in result table

4 years agoMerge pull request #10011 from kronbichler/fix_step-40_test
Timo Heister [Sat, 2 May 2020 11:25:57 +0000 (07:25 -0400)]
Merge pull request #10011 from kronbichler/fix_step-40_test

Fix step-40 test: Output n_dofs rather than IndexSet

4 years agoFix step-40 test: Output n_dofs rather than IndexSet 10011/head
Martin Kronbichler [Sat, 2 May 2020 05:32:02 +0000 (07:32 +0200)]
Fix step-40 test: Output n_dofs rather than IndexSet

4 years agoTest for project_onto_orthogonal_tensors improved 10010/head
Reza Rastak [Fri, 1 May 2020 20:36:17 +0000 (13:36 -0700)]
Test for project_onto_orthogonal_tensors improved

4 years agoMerge pull request #10007 from drwells/remove-backslashes
Daniel Arndt [Fri, 1 May 2020 17:28:32 +0000 (13:28 -0400)]
Merge pull request #10007 from drwells/remove-backslashes

4 years agoRemove some unneeded backslashes. 10007/head
David Wells [Fri, 1 May 2020 16:53:16 +0000 (12:53 -0400)]
Remove some unneeded backslashes.

MathJax doesn't need to escape underscores in text mode.

4 years agoMerge pull request #9993 from kronbichler/fix_la_parallel_vector_type_traits
Martin Kronbichler [Fri, 1 May 2020 14:27:07 +0000 (16:27 +0200)]
Merge pull request #9993 from kronbichler/fix_la_parallel_vector_type_traits

Fix SFINAE detection of LinOp for matrix-free operators

4 years agoMerge pull request #10005 from kronbichler/document_multithreaded_blas
Wolfgang Bangerth [Fri, 1 May 2020 14:21:29 +0000 (16:21 +0200)]
Merge pull request #10005 from kronbichler/document_multithreaded_blas

Comment on the use of thread-safe BLAS/LAPACK

4 years agoMerge pull request #10001 from kronbichler/improve_coupling_mass_matrix
Timo Heister [Fri, 1 May 2020 14:19:42 +0000 (10:19 -0400)]
Merge pull request #10001 from kronbichler/improve_coupling_mass_matrix

Remove quartic complexity from create_coupling_mass_matrix

4 years agoMerge pull request #10004 from kronbichler/refinement_edge_detect
Daniel Arndt [Fri, 1 May 2020 13:20:33 +0000 (09:20 -0400)]
Merge pull request #10004 from kronbichler/refinement_edge_detect

4 years agoMerge pull request #10003 from kronbichler/split_up_matrix_free_compilation
Daniel Arndt [Fri, 1 May 2020 13:17:25 +0000 (09:17 -0400)]
Merge pull request #10003 from kronbichler/split_up_matrix_free_compilation

4 years agoMerge pull request #10002 from kronbichler/convert_to_range_based
Daniel Arndt [Fri, 1 May 2020 12:33:42 +0000 (08:33 -0400)]
Merge pull request #10002 from kronbichler/convert_to_range_based

4 years agoMerge pull request #9999 from bangerth/q-points
Jean-Paul Pelteret [Fri, 1 May 2020 12:20:32 +0000 (14:20 +0200)]
Merge pull request #9999 from bangerth/q-points

Convert steps 4,5,6 to FEValues::quadrature_point_indices().

4 years agoComment on the use of thread-safe BLAS/LAPACK 10005/head
Martin Kronbichler [Fri, 1 May 2020 10:41:32 +0000 (12:41 +0200)]
Comment on the use of thread-safe BLAS/LAPACK

4 years agoBetter document missing refinement edge data in MF for DG 10004/head
Martin Kronbichler [Fri, 1 May 2020 10:14:56 +0000 (12:14 +0200)]
Better document missing refinement edge data in MF for DG

4 years agoSplit up matrix-free compilation into more files 10003/head
Martin Kronbichler [Fri, 1 May 2020 07:38:39 +0000 (09:38 +0200)]
Split up matrix-free compilation into more files

4 years agoConvert some loops over cells to range-based for loops 10002/head
Martin Kronbichler [Fri, 1 May 2020 06:30:02 +0000 (08:30 +0200)]
Convert some loops over cells to range-based for loops

4 years agoFix SFINAE detection of LinOp for matrix-free operators 9993/head
Martin Kronbichler [Thu, 30 Apr 2020 05:39:29 +0000 (07:39 +0200)]
Fix SFINAE detection of LinOp for matrix-free operators

4 years agoMerge pull request #9945 from peterrum/compute_n_locally_owned_active_cells_per_proce...
Martin Kronbichler [Fri, 1 May 2020 05:34:25 +0000 (07:34 +0200)]
Merge pull request #9945 from peterrum/compute_n_locally_owned_active_cells_per_processor_remove

Remove parallel::TriangulationBase::compute_n_locally_owned_active_cellls_per_processor

4 years agoRemove quartic complexity from create_coupling_mass_matrix 10001/head
Martin Kronbichler [Fri, 1 May 2020 05:28:02 +0000 (07:28 +0200)]
Remove quartic complexity from create_coupling_mass_matrix

4 years agoConvert steps 4,5,6 to FEValues::quadrature_point_indices(). 9999/head
Wolfgang Bangerth [Fri, 1 May 2020 03:20:31 +0000 (21:20 -0600)]
Convert steps 4,5,6 to FEValues::quadrature_point_indices().

4 years agoMerge pull request #9996 from tamiko/clear_some_variables
Daniel Arndt [Fri, 1 May 2020 00:17:18 +0000 (20:17 -0400)]
Merge pull request #9996 from tamiko/clear_some_variables

4 years agoCMake: Clear all cached variables in FindGINKGO.cmake 9996/head
Matthias Maier [Thu, 30 Apr 2020 21:27:12 +0000 (16:27 -0500)]
CMake: Clear all cached variables in FindGINKGO.cmake

4 years agoMerge pull request #9987 from jppelteret/fevalues_qpoint_rbl
Wolfgang Bangerth [Thu, 30 Apr 2020 21:09:41 +0000 (23:09 +0200)]
Merge pull request #9987 from jppelteret/fevalues_qpoint_rbl

Add range based loop for quadrature points to FEValuesBase

4 years agoUse FEValuesBase::quadrature_point_indices() in fe tests 9987/head
Jean-Paul Pelteret [Tue, 28 Apr 2020 21:55:21 +0000 (23:55 +0200)]
Use FEValuesBase::quadrature_point_indices() in fe tests

4 years agoAdd range based loop for QPoints to FEValuesBase
Jean-Paul Pelteret [Tue, 28 Apr 2020 18:16:19 +0000 (20:16 +0200)]
Add range based loop for QPoints to FEValuesBase

4 years agoMerge pull request #9986 from bangerth/fix
Daniel Arndt [Thu, 30 Apr 2020 18:27:47 +0000 (14:27 -0400)]
Merge pull request #9986 from bangerth/fix

4 years agoDo the computations in parallel. 9986/head
Wolfgang Bangerth [Tue, 28 Apr 2020 18:39:55 +0000 (12:39 -0600)]
Do the computations in parallel.

4 years agoAdd a changelog entry.
Wolfgang Bangerth [Tue, 28 Apr 2020 18:20:20 +0000 (12:20 -0600)]
Add a changelog entry.

4 years agoAdd a test.
Wolfgang Bangerth [Tue, 28 Apr 2020 18:19:03 +0000 (12:19 -0600)]
Add a test.

4 years agoFix copying hp::FEValues objects.
Wolfgang Bangerth [Tue, 28 Apr 2020 18:17:57 +0000 (12:17 -0600)]
Fix copying hp::FEValues objects.

4 years agoMerge pull request #9992 from tjhei/speed_up_coupling_08_test
Daniel Arndt [Thu, 30 Apr 2020 12:24:56 +0000 (08:24 -0400)]
Merge pull request #9992 from tjhei/speed_up_coupling_08_test

4 years agoMerge pull request #9950 from luca-heltai/print-parameters-with-output-style
Peter Munch [Thu, 30 Apr 2020 08:59:55 +0000 (10:59 +0200)]
Merge pull request #9950 from luca-heltai/print-parameters-with-output-style

Add ParameterHandler::print_parameters with std::string as input.

4 years agospeed up tests/non_matching/coupling_08 9992/head
Timo Heister [Thu, 30 Apr 2020 00:28:12 +0000 (20:28 -0400)]
speed up tests/non_matching/coupling_08

4 years agoMerge pull request #9984 from tjhei/ci_tidy_allheaders
Daniel Arndt [Wed, 29 Apr 2020 23:27:09 +0000 (19:27 -0400)]
Merge pull request #9984 from tjhei/ci_tidy_allheaders

4 years agoMerge pull request #9264 from nicola-giuliani/cell_measure_non_planar_faces
Daniel Arndt [Wed, 29 Apr 2020 18:37:00 +0000 (14:37 -0400)]
Merge pull request #9264 from nicola-giuliani/cell_measure_non_planar_faces

4 years agoMerge pull request #9968 from marcfehling/precalc-fevalues
Wolfgang Bangerth [Wed, 29 Apr 2020 15:41:38 +0000 (17:41 +0200)]
Merge pull request #9968 from marcfehling/precalc-fevalues

Precalculate hp::FEValues.

4 years agoMerge pull request #9974 from masterleinad/restrict_petsc_test
David Wells [Wed, 29 Apr 2020 15:28:33 +0000 (11:28 -0400)]
Merge pull request #9974 from masterleinad/restrict_petsc_test

Restrict mpi/petsc_step-27

4 years agoFixed tests output. 9950/head
Luca Heltai [Wed, 29 Apr 2020 12:01:48 +0000 (14:01 +0200)]
Fixed tests output.

4 years agoPrecalculate hp::FEValues. 9968/head
Marc Fehling [Mon, 27 Apr 2020 14:09:00 +0000 (16:09 +0200)]
Precalculate hp::FEValues.

4 years agoupdated output 9264/head
Nicola Giuliani [Wed, 29 Apr 2020 07:24:51 +0000 (09:24 +0200)]
updated output

4 years agoMerge pull request #9983 from tjhei/rename_header_guards
Daniel Arndt [Wed, 29 Apr 2020 03:22:20 +0000 (23:22 -0400)]
Merge pull request #9983 from tjhei/rename_header_guards

4 years agoMerge pull request #9979 from simonsticko/constantFunctionHessian
Daniel Arndt [Wed, 29 Apr 2020 02:32:20 +0000 (22:32 -0400)]
Merge pull request #9979 from simonsticko/constantFunctionHessian

4 years agofix script 9984/head
Timo Heister [Tue, 28 Apr 2020 18:50:14 +0000 (14:50 -0400)]
fix script

4 years agoqualify namespace
Timo Heister [Tue, 28 Apr 2020 18:30:31 +0000 (14:30 -0400)]
qualify namespace

4 years agofix typo
Timo Heister [Tue, 28 Apr 2020 16:35:01 +0000 (12:35 -0400)]
fix typo

4 years agoclarify namespace
Timo Heister [Tue, 28 Apr 2020 16:34:34 +0000 (12:34 -0400)]
clarify namespace

4 years agoCI: clang-tidy all headers
Timo Heister [Mon, 27 Apr 2020 15:03:58 +0000 (11:03 -0400)]
CI: clang-tidy all headers

Hijack the already existing dummy.cc to include a dynamically created
header that includes all deal.II header files. This will run clang-tidy
on all headers.
I tried running clang-tidy on a .cc generated inside the build
directory, but this doesn't work for some reason.

closes #9933

4 years agoMerge pull request #9981 from tjhei/tidy_internal_namespace_qualify
Daniel Arndt [Wed, 29 Apr 2020 00:53:09 +0000 (20:53 -0400)]
Merge pull request #9981 from tjhei/tidy_internal_namespace_qualify

4 years agoMerge pull request #9980 from simonsticko/symmetricTensorErrorMessage
Daniel Arndt [Wed, 29 Apr 2020 00:52:53 +0000 (20:52 -0400)]
Merge pull request #9980 from simonsticko/symmetricTensorErrorMessage

4 years agoMerge pull request #9985 from drwells/remove-unused-headers
Daniel Arndt [Tue, 28 Apr 2020 22:43:23 +0000 (18:43 -0400)]
Merge pull request #9985 from drwells/remove-unused-headers

4 years agoMake all possible Short combinations of output work.
Luca Heltai [Tue, 28 Apr 2020 21:09:39 +0000 (23:09 +0200)]
Make all possible Short combinations of output work.

4 years agoMake parameter_acceptor use the new print_parameter function.
Luca Heltai [Tue, 28 Apr 2020 21:07:33 +0000 (23:07 +0200)]
Make parameter_acceptor use the new print_parameter function.

4 years agoAdded print_parameters with string and style.
Luca Heltai [Tue, 28 Apr 2020 21:05:07 +0000 (23:05 +0200)]
Added print_parameters with string and style.

4 years agoRemove two unused headers. 9985/head
David Wells [Tue, 28 Apr 2020 16:53:16 +0000 (12:53 -0400)]
Remove two unused headers.

4 years agoImplement hessian and laplacian on ConstantFunction. 9979/head
Simon Sticko [Tue, 28 Apr 2020 14:33:43 +0000 (16:33 +0200)]
Implement hessian and laplacian on ConstantFunction.

4 years agorename header guards in noncontiguous_partitioner 9983/head
Timo Heister [Mon, 27 Apr 2020 19:10:32 +0000 (15:10 -0400)]
rename header guards in noncontiguous_partitioner

4 years agoqualify internal namespace with dealii:: 9981/head
Timo Heister [Tue, 28 Apr 2020 16:00:50 +0000 (12:00 -0400)]
qualify internal namespace with dealii::

Fix errors like:

/src/include/deal.II/lac/la_vector.templates.h:196:5: error: no member
named 'VectorOperations' in namespace 'dealii::LinearAlgebra::internal';
did you mean 'VectorOperation'? [clang-diagnostic-error]

that appear if some other internal namespace is included before
la_vector.templates.h

part of #9933

4 years agoImprove error message in SymmetricTensor constructor. 9980/head
Simon Sticko [Tue, 28 Apr 2020 15:05:19 +0000 (17:05 +0200)]
Improve error message in SymmetricTensor constructor.

4 years agoMerge pull request #9976 from masterleinad/fix_more_funny_spacing
Wolfgang Bangerth [Tue, 28 Apr 2020 14:49:03 +0000 (16:49 +0200)]
Merge pull request #9976 from masterleinad/fix_more_funny_spacing

Fix more funny spacings


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