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dealii.git
6 years agoMerge pull request #6870 from masterleinad/indent_example-step-27
Wolfgang Bangerth [Thu, 5 Jul 2018 13:28:46 +0000 (07:28 -0600)]
Merge pull request #6870 from masterleinad/indent_example-step-27

examples/step-27: Update indenting and modernize

6 years agoMerge pull request #6871 from masterleinad/fix_kdtree_docu
Wolfgang Bangerth [Thu, 5 Jul 2018 13:27:18 +0000 (07:27 -0600)]
Merge pull request #6871 from masterleinad/fix_kdtree_docu

Fix kdtree documentation and reflow comments manually

6 years agoMerge pull request #6874 from bangerth/doc-update
Matthias Maier [Wed, 4 Jul 2018 15:49:30 +0000 (10:49 -0500)]
Merge pull request #6874 from bangerth/doc-update

Update the documentation of the Rannacher Turek element.

6 years agoMerge pull request #6884 from kronbichler/line_break_changelog
Matthias Maier [Wed, 4 Jul 2018 15:48:49 +0000 (10:48 -0500)]
Merge pull request #6884 from kronbichler/line_break_changelog

Make sure to add a line break in the changelogs

6 years agoMerge pull request #6883 from masterleinad/fix_dofs_headers
Matthias Maier [Wed, 4 Jul 2018 15:48:23 +0000 (10:48 -0500)]
Merge pull request #6883 from masterleinad/fix_dofs_headers

Fix comments in @code blocks in dofs headers

6 years agoMerge pull request #6882 from masterleinad/fix_distrributed_headers
Matthias Maier [Wed, 4 Jul 2018 15:47:50 +0000 (10:47 -0500)]
Merge pull request #6882 from masterleinad/fix_distrributed_headers

Fix comments in @code blocks in distributed headers

6 years agoMerge pull request #6793 from drwells/require-tbb-4.2.0-or-newer
Matthias Maier [Wed, 4 Jul 2018 15:47:08 +0000 (10:47 -0500)]
Merge pull request #6793 from drwells/require-tbb-4.2.0-or-newer

Require TBB 4.2.0 or newer.

6 years agoMake sure to add a line break in the changelogs. 6884/head
Martin Kronbichler [Wed, 4 Jul 2018 13:44:08 +0000 (15:44 +0200)]
Make sure to add a line break in the changelogs.

6 years agoFix comments in @code blocks in dofs headers 6883/head
Daniel Arndt [Wed, 4 Jul 2018 13:17:30 +0000 (15:17 +0200)]
Fix comments in @code blocks in dofs headers

6 years agoRequire TBB 4.2.0 or newer. 6793/head
David Wells [Tue, 19 Jun 2018 18:02:18 +0000 (14:02 -0400)]
Require TBB 4.2.0 or newer.

TBB 4.1 is not compatible with newer versions of GCC due to some missing
std::atomic::load calls, so lets blacklist all older versions.

6 years agoMerge pull request #6879 from marcfehling/p4est-2.0
Daniel Arndt [Wed, 4 Jul 2018 11:26:34 +0000 (13:26 +0200)]
Merge pull request #6879 from marcfehling/p4est-2.0

 Increase minimum version of p4est to 2.0.

6 years agoFix comments in @code blocks in distributed headers 6882/head
Daniel Arndt [Wed, 4 Jul 2018 10:26:36 +0000 (12:26 +0200)]
Fix comments in @code blocks in distributed headers

6 years agoMerge pull request #6881 from marcfehling/attach_data_01_fix
Wolfgang Bangerth [Wed, 4 Jul 2018 03:42:06 +0000 (21:42 -0600)]
Merge pull request #6881 from marcfehling/attach_data_01_fix

Let 'attach_data_01' consider case with more procs than cells.

6 years agoMerge pull request #6878 from masterleinad/restrict_wclass-memaccess
Wolfgang Bangerth [Wed, 4 Jul 2018 02:41:29 +0000 (20:41 -0600)]
Merge pull request #6878 from masterleinad/restrict_wclass-memaccess

Disable -Wclass-memaccess for non-CXX17 builds and in bundled boost

6 years agoLet 'attach_data_01' consider case with more procs than cells. 6881/head
Marc Fehling [Wed, 4 Jul 2018 00:06:19 +0000 (18:06 -0600)]
Let 'attach_data_01' consider case with more procs than cells.

6 years agoDisable -Wclass-memaccess for non-CXX17 builds and in bundled boost 6878/head
Daniel Arndt [Tue, 3 Jul 2018 21:36:35 +0000 (23:36 +0200)]
Disable -Wclass-memaccess for non-CXX17 builds and in bundled boost

6 years agoDrop backward compatibilities to older versions of p4est than 2.0. 6879/head
Marc Fehling [Tue, 3 Jul 2018 21:22:28 +0000 (15:22 -0600)]
Drop backward compatibilities to older versions of p4est than 2.0.

6 years agoIncrease minimum version of p4est to 2.0.
Marc Fehling [Tue, 3 Jul 2018 20:50:03 +0000 (14:50 -0600)]
Increase minimum version of p4est to 2.0.

6 years agoUpdate the documentation of the Rannacher Turek element. 6874/head
Wolfgang Bangerth [Tue, 3 Jul 2018 15:59:37 +0000 (09:59 -0600)]
Update the documentation of the Rannacher Turek element.

6 years agoMerge pull request #6817 from masterleinad/indent_example-step-22
Wolfgang Bangerth [Mon, 2 Jul 2018 19:06:34 +0000 (13:06 -0600)]
Merge pull request #6817 from masterleinad/indent_example-step-22

examples/step-22: Update indenting and modernize

6 years agoImprove comments for the (bi-)linear forms 6817/head
Daniel Arndt [Mon, 2 Jul 2018 14:25:23 +0000 (16:25 +0200)]
Improve comments for the (bi-)linear forms

6 years agoProvide a more verbose name for a variable 6870/head
Daniel Arndt [Mon, 2 Jul 2018 12:20:42 +0000 (14:20 +0200)]
Provide a more verbose name for a variable

6 years agoFix kdtree documentation and reflow comments manually 6871/head
Daniel Arndt [Sun, 1 Jul 2018 23:44:33 +0000 (01:44 +0200)]
Fix kdtree documentation and reflow comments manually

6 years agoexamples/step-27: Update indenting and modernize
Daniel Arndt [Sun, 1 Jul 2018 21:49:09 +0000 (23:49 +0200)]
examples/step-27: Update indenting and modernize

6 years agoMerge pull request #6849 from masterleinad/indent_example-step-16
Denis Davydov [Sat, 30 Jun 2018 05:11:24 +0000 (07:11 +0200)]
Merge pull request #6849 from masterleinad/indent_example-step-16

example/step-16: Update indenting and modernize

6 years agoMerge pull request #6865 from drwells/fix-exception-classification
Denis Davydov [Sat, 30 Jun 2018 05:09:14 +0000 (07:09 +0200)]
Merge pull request #6865 from drwells/fix-exception-classification

Fix an exception description.

6 years agoMerge pull request #6862 from masterleinad/indent_example-step-13
Denis Davydov [Sat, 30 Jun 2018 05:06:53 +0000 (07:06 +0200)]
Merge pull request #6862 from masterleinad/indent_example-step-13

examples/step-13: Update indenting and modernize

6 years agoMerge pull request #6866 from drwells/reformat-bibtex-code
Denis Davydov [Sat, 30 Jun 2018 05:03:48 +0000 (07:03 +0200)]
Merge pull request #6866 from drwells/reformat-bibtex-code

Reformat bibtex code

6 years agoFix a broken URL. 6866/head
David Wells [Sat, 30 Jun 2018 04:41:03 +0000 (00:41 -0400)]
Fix a broken URL.

6 years agoReindent the bibtex entries.
David Wells [Sat, 30 Jun 2018 04:11:52 +0000 (00:11 -0400)]
Reindent the bibtex entries.

Since some lines were longer than 80 characters clang-format made a mess
here. Clean it up by splitting lines manually around fields.

6 years agoFix an exception description. 6865/head
David Wells [Sat, 30 Jun 2018 03:52:55 +0000 (23:52 -0400)]
Fix an exception description.

The implementation throws an exception at run time (with Assert).

6 years agoRemove unused variable in dox file 6862/head
Daniel Arndt [Fri, 29 Jun 2018 19:58:02 +0000 (21:58 +0200)]
Remove unused variable in dox file

6 years agoexamples/step-13: Update indenting and modernize
Daniel Arndt [Fri, 29 Jun 2018 19:10:51 +0000 (21:10 +0200)]
examples/step-13: Update indenting and modernize

6 years agoMerge pull request #6859 from drwells/update-step-10-3
Daniel Arndt [Fri, 29 Jun 2018 17:47:11 +0000 (19:47 +0200)]
Merge pull request #6859 from drwells/update-step-10-3

Use a range-for in step-10.

6 years agoMerge pull request #6860 from drwells/update-step-11
Daniel Arndt [Fri, 29 Jun 2018 17:46:25 +0000 (19:46 +0200)]
Merge pull request #6860 from drwells/update-step-11

Update step 11

6 years agoMerge pull request #6839 from drwells/step-40-modernization
Daniel Arndt [Fri, 29 Jun 2018 15:41:32 +0000 (17:41 +0200)]
Merge pull request #6839 from drwells/step-40-modernization

Update step-40.

6 years agoexample/step-16: Update indenting and modernize 6849/head
Daniel Arndt [Tue, 26 Jun 2018 14:40:46 +0000 (16:40 +0200)]
example/step-16: Update indenting and modernize

6 years agoUse a range-for in step-10. 6859/head
David Wells [Fri, 29 Jun 2018 13:04:11 +0000 (09:04 -0400)]
Use a range-for in step-10.

This finishes the modernization started in commits 0ef6e96485b and 332a199f3f9.

6 years agoDelete some trailing whitespace. 6860/head
David Wells [Fri, 29 Jun 2018 13:17:41 +0000 (09:17 -0400)]
Delete some trailing whitespace.

6 years agoUpdate step-11 to use AffineConstraints.
David Wells [Fri, 29 Jun 2018 13:17:29 +0000 (09:17 -0400)]
Update step-11 to use AffineConstraints.

6 years agoMerge pull request #6857 from masterleinad/explicit_identity_matrix_constructor
Daniel Arndt [Fri, 29 Jun 2018 07:34:17 +0000 (09:34 +0200)]
Merge pull request #6857 from masterleinad/explicit_identity_matrix_constructor

Make IdentityMatrix constructor explicit

6 years agoMake IdentityMatrix constructor explicit 6857/head
Daniel Arndt [Thu, 28 Jun 2018 14:08:03 +0000 (16:08 +0200)]
Make IdentityMatrix constructor explicit

6 years agoMerge pull request #6850 from masterleinad/use_using
David Wells [Thu, 28 Jun 2018 20:04:56 +0000 (16:04 -0400)]
Merge pull request #6850 from masterleinad/use_using

Replace typedef by using

6 years agoUpdate coding conventions 6850/head
Daniel Arndt [Thu, 28 Jun 2018 17:08:22 +0000 (19:08 +0200)]
Update coding conventions

6 years agoMerge pull request #6838 from masterleinad/indent_example-step-12
David Wells [Thu, 28 Jun 2018 16:09:23 +0000 (12:09 -0400)]
Merge pull request #6838 from masterleinad/indent_example-step-12

examples/step-12: Update indenting and modernize

6 years agoFix typo 6838/head
Daniel Arndt [Thu, 28 Jun 2018 15:03:34 +0000 (17:03 +0200)]
Fix typo

6 years agoMake IdentityMatrix constrcutor explicit
Daniel Arndt [Thu, 28 Jun 2018 14:08:03 +0000 (16:08 +0200)]
Make IdentityMatrix constrcutor explicit

6 years agoMerge pull request #6846 from masterleinad/fix_wrange_loop_analysis
David Wells [Thu, 28 Jun 2018 12:38:08 +0000 (08:38 -0400)]
Merge pull request #6846 from masterleinad/fix_wrange_loop_analysis

Fix more -Wrange-loop-analysis findings

6 years agoMerge pull request #6852 from bangerth/doc-update-99
David Wells [Thu, 28 Jun 2018 12:36:43 +0000 (08:36 -0400)]
Merge pull request #6852 from bangerth/doc-update-99

Clarify documentation of Patterns::Integer.

6 years agoPass IndexSet element by copy 6846/head
Daniel Arndt [Thu, 28 Jun 2018 08:05:21 +0000 (10:05 +0200)]
Pass IndexSet element by copy

6 years agoFix more -Wrange-loop-analysis findings
Daniel Arndt [Tue, 26 Jun 2018 00:34:38 +0000 (02:34 +0200)]
Fix more -Wrange-loop-analysis findings

6 years agoMerge pull request #6853 from bangerth/unsigned
Daniel Arndt [Thu, 28 Jun 2018 07:35:54 +0000 (09:35 +0200)]
Merge pull request #6853 from bangerth/unsigned

Pass an unsigned int by value, rather than reference.

6 years agoMerge pull request #6854 from bangerth/add-copyright
Daniel Arndt [Wed, 27 Jun 2018 23:25:58 +0000 (01:25 +0200)]
Merge pull request #6854 from bangerth/add-copyright

Add a missing copyright note.

6 years agoAdd a missing copyright note. 6854/head
Wolfgang Bangerth [Wed, 27 Jun 2018 23:09:12 +0000 (17:09 -0600)]
Add a missing copyright note.

6 years agoPass an unsigned int by value, rather than reference. 6853/head
Wolfgang Bangerth [Wed, 27 Jun 2018 23:08:02 +0000 (17:08 -0600)]
Pass an unsigned int by value, rather than reference.

6 years agoClarify documentation of Patterns::Integer. 6852/head
Wolfgang Bangerth [Wed, 27 Jun 2018 23:06:49 +0000 (17:06 -0600)]
Clarify documentation of Patterns::Integer.

6 years agoUse modernize-use-using check
Daniel Arndt [Wed, 27 Jun 2018 13:14:40 +0000 (15:14 +0200)]
Use modernize-use-using check

6 years agoReplace typedef by using in include
Daniel Arndt [Wed, 27 Jun 2018 13:13:01 +0000 (15:13 +0200)]
Replace typedef by using in include

6 years agoReplace typedef by using in source
Daniel Arndt [Wed, 27 Jun 2018 13:12:23 +0000 (15:12 +0200)]
Replace typedef by using in source

6 years agoReplace typedef by using in examples
Daniel Arndt [Wed, 27 Jun 2018 13:10:26 +0000 (15:10 +0200)]
Replace typedef by using in examples

6 years agoMerge pull request #6779 from tamiko/update-step-4
Martin Kronbichler [Tue, 26 Jun 2018 17:57:54 +0000 (19:57 +0200)]
Merge pull request #6779 from tamiko/update-step-4

examples/step-4: Update indenting

6 years agoMerge pull request #6845 from masterleinad/step-20-unused
Martin Kronbichler [Tue, 26 Jun 2018 17:57:09 +0000 (19:57 +0200)]
Merge pull request #6845 from masterleinad/step-20-unused

Avoid warning for an unused variable in step-20

6 years agoMerge pull request #6780 from tamiko/update-step-5
Daniel Arndt [Tue, 26 Jun 2018 12:34:49 +0000 (14:34 +0200)]
Merge pull request #6780 from tamiko/update-step-5

examples/step-5: Update indenting

6 years agoMerge pull request #6844 from masterleinad/return_iterator_const_ref
Daniel Arndt [Tue, 26 Jun 2018 12:17:58 +0000 (14:17 +0200)]
Merge pull request #6844 from masterleinad/return_iterator_const_ref

Return dereferenced IteratorOverIterators object by const reference

6 years agoImprove indentation
Daniel Arndt [Tue, 26 Jun 2018 12:16:17 +0000 (14:16 +0200)]
Improve indentation

6 years agoMerge pull request #6778 from tamiko/update-step-3
Daniel Arndt [Tue, 26 Jun 2018 09:24:28 +0000 (11:24 +0200)]
Merge pull request #6778 from tamiko/update-step-3

examples/step-3: Update indenting

6 years agoAvoid warning for an unused variable in step-20 6845/head
Daniel Arndt [Tue, 26 Jun 2018 00:28:23 +0000 (02:28 +0200)]
Avoid warning for an unused variable in step-20

6 years agoMerge pull request #6843 from drwells/step-49-modernization-4
Daniel Arndt [Tue, 26 Jun 2018 07:20:10 +0000 (09:20 +0200)]
Merge pull request #6843 from drwells/step-49-modernization-4

Use brace initialization instead of writing Point<2> a lot.

6 years agoMerge pull request #6842 from masterleinad/simplify_tests
Wolfgang Bangerth [Tue, 26 Jun 2018 02:11:31 +0000 (20:11 -0600)]
Merge pull request #6842 from masterleinad/simplify_tests

Simplify test failing for older gcc

6 years agoReturn iterator by const reference 6844/head
Daniel Arndt [Mon, 25 Jun 2018 23:13:11 +0000 (01:13 +0200)]
Return iterator by const reference

6 years agoUse brace initialization instead of writing Point<2> a lot. 6843/head
David Wells [Mon, 25 Jun 2018 23:50:00 +0000 (19:50 -0400)]
Use brace initialization instead of writing Point<2> a lot.

6 years agoupdate 6780/head
Matthias Maier [Mon, 25 Jun 2018 22:58:00 +0000 (17:58 -0500)]
update

6 years agostep-5: make bilinear forms more readable
Matthias Maier [Fri, 15 Jun 2018 23:21:26 +0000 (18:21 -0500)]
step-5: make bilinear forms more readable

Also use "0." instead of "0" for zeroing two matrices.

6 years agostep-5: remove TODO
Matthias Maier [Fri, 15 Jun 2018 23:18:37 +0000 (18:18 -0500)]
step-5: remove TODO

6 years agoupdate 6779/head
Matthias Maier [Mon, 25 Jun 2018 22:47:58 +0000 (17:47 -0500)]
update

6 years agostep-4: make bilinear forms more readable
Matthias Maier [Fri, 15 Jun 2018 23:14:49 +0000 (18:14 -0500)]
step-4: make bilinear forms more readable

6 years agoupdate 6778/head
Matthias Maier [Mon, 25 Jun 2018 22:39:33 +0000 (17:39 -0500)]
update

6 years agostep-3: make bilinear forms more readable
Matthias Maier [Fri, 15 Jun 2018 23:01:27 +0000 (18:01 -0500)]
step-3: make bilinear forms more readable

6 years agoSimplify test failing for older gcc 6842/head
Daniel Arndt [Mon, 25 Jun 2018 16:21:29 +0000 (18:21 +0200)]
Simplify test failing for older gcc

6 years agoMerge pull request #6841 from agrayver/fix_petsc_blockvec_inst
Daniel Arndt [Mon, 25 Jun 2018 21:25:54 +0000 (23:25 +0200)]
Merge pull request #6841 from agrayver/fix_petsc_blockvec_inst

Add PETSc BlockVector instantiations

6 years agoFix some @refs to be on one line. 6839/head
David Wells [Mon, 25 Jun 2018 16:42:34 +0000 (12:42 -0400)]
Fix some @refs to be on one line.

6 years agoAdd parallel references to Trilinos to step-40.
David Wells [Mon, 25 Jun 2018 15:36:37 +0000 (11:36 -0400)]
Add parallel references to Trilinos to step-40.

This tutorial can be run with either PETSc or Trilinos so the discussion
should cover both.

6 years agoUpdate step-40.
David Wells [Mon, 25 Jun 2018 14:16:48 +0000 (10:16 -0400)]
Update step-40.

6 years agoAdd PETSc BlockVector insts 6841/head
Alexander Grayver [Mon, 25 Jun 2018 16:20:17 +0000 (18:20 +0200)]
Add PETSc BlockVector insts

6 years agoMerge pull request #6833 from masterleinad/indent_example-step-35
David Wells [Mon, 25 Jun 2018 14:57:33 +0000 (10:57 -0400)]
Merge pull request #6833 from masterleinad/indent_example-step-35

examples/step-35: Update indenting and modernize

6 years agoMerge pull request #6831 from drwells/step-49-modernization-3
Daniel Arndt [Mon, 25 Jun 2018 13:48:43 +0000 (15:48 +0200)]
Merge pull request #6831 from drwells/step-49-modernization-3

Run clang-format on the step-49 example code.

6 years agoexamples/step-12: Update indenting and modernize
Daniel Arndt [Mon, 25 Jun 2018 12:40:48 +0000 (14:40 +0200)]
examples/step-12: Update indenting and modernize

6 years agoMerge pull request #6806 from masterleinad/indent_example-20
David Wells [Mon, 25 Jun 2018 11:28:55 +0000 (07:28 -0400)]
Merge pull request #6806 from masterleinad/indent_example-20

example/step-20: Update indenting and modernize

6 years agoPut variables on separate lines 6833/head
Daniel Arndt [Mon, 25 Jun 2018 10:56:50 +0000 (12:56 +0200)]
Put variables on separate lines

6 years agoMerge pull request #6835 from masterleinad/fix_data_out_tests
Denis Davydov [Mon, 25 Jun 2018 04:04:20 +0000 (06:04 +0200)]
Merge pull request #6835 from masterleinad/fix_data_out_tests

Fix failing data_out_* tests

6 years agoMerge pull request #6834 from masterleinad/fix_clang_tidy_performance
Denis Davydov [Mon, 25 Jun 2018 03:53:02 +0000 (05:53 +0200)]
Merge pull request #6834 from masterleinad/fix_clang_tidy_performance

Fix some clang-tidy findings

6 years agoMerge pull request #6794 from drwells/add-codimension-note
Daniel Arndt [Sun, 24 Jun 2018 22:25:57 +0000 (00:25 +0200)]
Merge pull request #6794 from drwells/add-codimension-note

Mention the need for manifolds when codim != 0.

6 years agoFix failing data_out_* tests 6835/head
Daniel Arndt [Sun, 24 Jun 2018 22:18:22 +0000 (00:18 +0200)]
Fix failing data_out_* tests

6 years agoFix some clang-tidy findings 6834/head
Daniel Arndt [Sun, 24 Jun 2018 21:58:17 +0000 (23:58 +0200)]
Fix some clang-tidy findings

6 years agoexamples/step-35: Update indenting and modernize
Daniel Arndt [Sun, 24 Jun 2018 21:09:29 +0000 (23:09 +0200)]
examples/step-35: Update indenting and modernize

6 years agoRestore Extractor name 6806/head
Daniel Arndt [Sun, 24 Jun 2018 16:46:56 +0000 (18:46 +0200)]
Restore Extractor name

6 years agoMerge pull request #6830 from masterleinad/backward_compatibility_6816
David Wells [Sat, 23 Jun 2018 23:17:19 +0000 (19:17 -0400)]
Merge pull request #6830 from masterleinad/backward_compatibility_6816

Restore backward-compatibility for #6816

6 years agoRun clang-format on the step-49 example code. 6831/head
David Wells [Sat, 23 Jun 2018 20:24:11 +0000 (16:24 -0400)]
Run clang-format on the step-49 example code.

6 years agoMerge pull request #6829 from davydden/minor/fix_hdf5_test
Denis Davydov [Sat, 23 Jun 2018 20:13:46 +0000 (22:13 +0200)]
Merge pull request #6829 from davydden/minor/fix_hdf5_test

fix failing HDF5 test

6 years agoRestore backward-compatibility for #6816 6830/head
Daniel Arndt [Sat, 23 Jun 2018 17:08:18 +0000 (19:08 +0200)]
Restore backward-compatibility for #6816


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