]> https://gitweb.dealii.org/ - dealii.git/log
dealii.git
9 years agoFix Functions::Monomial::gradient 1052/head
angelrca [Mon, 29 Jun 2015 09:26:33 +0000 (11:26 +0200)]
Fix Functions::Monomial::gradient

9 years agochanges.h, blocks moved 987/head
angelrca [Wed, 3 Jun 2015 09:56:56 +0000 (11:56 +0200)]
changes.h, blocks moved

9 years agointerpolate_nothing_03.cc date changed
angelrca [Wed, 3 Jun 2015 09:52:38 +0000 (11:52 +0200)]
interpolate_nothing_03.cc date changed

9 years agotest case interpolate_nothing_03 added
angelrca [Wed, 3 Jun 2015 09:29:22 +0000 (11:29 +0200)]
test case interpolate_nothing_03 added

9 years agodoc/news/changes.h line added
angelrca [Wed, 3 Jun 2015 08:43:36 +0000 (10:43 +0200)]
doc/news/changes.h line added

9 years agoindentation corrected
angelrca [Wed, 3 Jun 2015 07:49:47 +0000 (09:49 +0200)]
indentation corrected

9 years agovector_tools::interpolation identation corrected
angelrca [Tue, 2 Jun 2015 16:50:43 +0000 (18:50 +0200)]
vector_tools::interpolation identation corrected

9 years agoMerge branch 'vtools_interp_fenot' of https://github.com/angelrca/dealii into vtools_...
angelrca [Tue, 2 Jun 2015 15:34:01 +0000 (17:34 +0200)]
Merge branch 'vtools_interp_fenot' of https://github.com/angelrca/dealii into vtools_interp_fenot

9 years agoVectorTools::interpolate changed
angelrca [Tue, 2 Jun 2015 14:32:24 +0000 (16:32 +0200)]
VectorTools::interpolate changed

9 years agoVectorTools::interpolate changed
angelrca [Tue, 2 Jun 2015 14:32:24 +0000 (16:32 +0200)]
VectorTools::interpolate changed

9 years agoMerge pull request #986 from ESeNonFossiIo/null_operator
Luca Heltai [Tue, 2 Jun 2015 12:54:29 +0000 (14:54 +0200)]
Merge pull request #986 from ESeNonFossiIo/null_operator

null operator

9 years agonull operator 986/head
ESeNonFossiIo [Tue, 2 Jun 2015 10:39:38 +0000 (12:39 +0200)]
null operator

9 years agoMerge pull request #983 from drwells/memory-usage-strlen-header
Wolfgang Bangerth [Mon, 1 Jun 2015 12:23:35 +0000 (07:23 -0500)]
Merge pull request #983 from drwells/memory-usage-strlen-header

Fix two issues with C string memory consumption.

9 years agoFix two issues with C string memory consumption. 983/head
David Wells [Mon, 1 Jun 2015 12:02:49 +0000 (08:02 -0400)]
Fix two issues with C string memory consumption.
These were pointed out by @msteigemann.

Including cstring to obtain strlen is not necessary with some GCC
releases, but may be needed on other platforms.

I rewrote the call to strlen so that it does not rely on the fact that
sizeof(char) == 1 on most platforms.

9 years agoMerge pull request #982 from drwells/refactor-data-out-flags-base-class
Wolfgang Bangerth [Mon, 1 Jun 2015 03:03:47 +0000 (22:03 -0500)]
Merge pull request #982 from drwells/refactor-data-out-flags-base-class

Refactor data out flags base class

9 years agoAdd an '@ingroup output' label to an output flag. 982/head
David Wells [Sun, 31 May 2015 22:52:04 +0000 (18:52 -0400)]
Add an '@ingroup output' label to an output flag.

9 years agoConsistently label constructors.
David Wells [Sun, 31 May 2015 22:41:08 +0000 (18:41 -0400)]
Consistently label constructors.

9 years agoDelete extra 'public:' labels.
David Wells [Sun, 31 May 2015 22:39:56 +0000 (18:39 -0400)]
Delete extra 'public:' labels.
Things in structs are public by default.

9 years agoRemove default constructor implementations.
David Wells [Sun, 31 May 2015 22:36:58 +0000 (18:36 -0400)]
Remove default constructor implementations.

9 years agoSwitch to just spaces, instead of tabs and spaces.
David Wells [Sun, 31 May 2015 22:33:30 +0000 (18:33 -0400)]
Switch to just spaces, instead of tabs and spaces.

9 years agoReplace all set_flags functions with a template.
David Wells [Sun, 31 May 2015 22:28:45 +0000 (18:28 -0400)]
Replace all set_flags functions with a template.
This sacrifices some type safety in optimized mode to decrease
redundancy.

9 years agoRemove empty declare and parse parameter methods.
David Wells [Sun, 31 May 2015 22:19:04 +0000 (18:19 -0400)]
Remove empty declare and parse parameter methods.
The default implementation (also an empty block) is covered by the base
class.

9 years agoImprove the TecplotFlags memory estimate.
David Wells [Sun, 31 May 2015 22:11:39 +0000 (18:11 -0400)]
Improve the TecplotFlags memory estimate.

9 years agoRemove extra memory_consumption methods.
David Wells [Sun, 31 May 2015 21:58:24 +0000 (17:58 -0400)]
Remove extra memory_consumption methods.
The base class (introduced by the previous commit) implements the
behavior common to all of these methods.

9 years agoAdd a base class for all output flag classes.
David Wells [Sun, 31 May 2015 21:50:18 +0000 (17:50 -0400)]
Add a base class for all output flag classes.
The base class uses "the curiously recurring template pattern" technique
so that they can all share a default implementation of memory
consumption (i.e., something akin to "return sizeof(*this)" works for
child classes unless overridden).

9 years agoMerge pull request #981 from tjhei/inst_mismatch
Wolfgang Bangerth [Sun, 31 May 2015 02:10:44 +0000 (21:10 -0500)]
Merge pull request #981 from tjhei/inst_mismatch

fix instantiation of subdivided_hyper_rectangle

9 years agofix instantiation of subdivided_hyper_rectangle 981/head
Timo Heister [Sun, 31 May 2015 01:41:04 +0000 (21:41 -0400)]
fix instantiation of subdivided_hyper_rectangle

intel compiler complains about a missing instantiation because of a missing const

9 years agoMerge pull request #980 from tjhei/fix_deprecated_statement
Wolfgang Bangerth [Sun, 31 May 2015 01:23:45 +0000 (20:23 -0500)]
Merge pull request #980 from tjhei/fix_deprecated_statement

fix placement of deprecation keyword

9 years agofix placement of deprecation keyword 980/head
Timo Heister [Sun, 31 May 2015 01:11:59 +0000 (21:11 -0400)]
fix placement of deprecation keyword

9 years agoMerge pull request #978 from davydden/local_integrators2
Guido Kanschat [Fri, 29 May 2015 22:16:20 +0000 (00:16 +0200)]
Merge pull request #978 from davydden/local_integrators2

exploit symmetries in Local integrators of mass and laplace matrices
avoid copying the matrix entries and thus side effects

closes issue #976

9 years agoaccumulate sums over n_components 978/head
Denis Davydov [Fri, 29 May 2015 20:24:02 +0000 (22:24 +0200)]
accumulate sums over n_components

9 years agoexploit symmetries in Local integrators of mass and laplace matrices without assignme...
Denis Davydov [Fri, 29 May 2015 18:59:10 +0000 (20:59 +0200)]
exploit symmetries in Local integrators of mass and laplace matrices without assignment operation

9 years agoMerge pull request #975 from guidokanschat/documentation_relaxation_block
Wolfgang Bangerth [Fri, 29 May 2015 17:52:16 +0000 (10:52 -0700)]
Merge pull request #975 from guidokanschat/documentation_relaxation_block

Add some documentation on the special structure of RelaxationBlock::A…

9 years agoAdd some documentation on the special structure of RelaxationBlock::AdditionalData 975/head
Guido Kanschat [Fri, 29 May 2015 15:52:51 +0000 (17:52 +0200)]
Add some documentation on the special structure of RelaxationBlock::AdditionalData

9 years agoMerge pull request #972 from bangerth/fix-test-4
Martin Kronbichler [Fri, 29 May 2015 06:35:16 +0000 (08:35 +0200)]
Merge pull request #972 from bangerth/fix-test-4

Fix a test where we may inadvertently divide by zero.

9 years agoMerge pull request #973 from bangerth/fix-condition
Guido Kanschat [Fri, 29 May 2015 05:46:35 +0000 (07:46 +0200)]
Merge pull request #973 from bangerth/fix-condition

Use a standard method to find whether a number is normal.

9 years agoUse a standard method to find whether a number is normal. 973/head
Wolfgang Bangerth [Thu, 28 May 2015 20:37:37 +0000 (15:37 -0500)]
Use a standard method to find whether a number is normal.

In the current context, this slightly changes the behavior in that the new
condition also catches infinities, rather than just NaNs as before, but the
downstream code will still yield the same answers.

9 years agoFix a test where we may inadvertently divide by zero. 972/head
Wolfgang Bangerth [Thu, 28 May 2015 20:26:21 +0000 (15:26 -0500)]
Fix a test where we may inadvertently divide by zero.

The test is also just overly convoluted.

9 years agoMerge pull request #971 from bangerth/fix-test-3
Luca Heltai [Thu, 28 May 2015 17:41:23 +0000 (19:41 +0200)]
Merge pull request #971 from bangerth/fix-test-3

Fix test.

9 years agoFix test. 971/head
Wolfgang Bangerth [Thu, 28 May 2015 16:35:15 +0000 (11:35 -0500)]
Fix test.

The test uses acosh(0.5), but acosh is only defined for arguments >=1.

9 years agoMerge pull request #970 from guidokanschat/fix_newton_threshold
Wolfgang Bangerth [Thu, 28 May 2015 16:01:03 +0000 (12:01 -0400)]
Merge pull request #970 from guidokanschat/fix_newton_threshold

fix glitch with assemble_threshold, avoid division by zero

9 years agoMerge pull request #969 from tamiko/rename_two_more_header_guards
Luca Heltai [Thu, 28 May 2015 15:13:21 +0000 (17:13 +0200)]
Merge pull request #969 from tamiko/rename_two_more_header_guards

Rename two more header guards

9 years agoMerge pull request #759 from guidokanschat/fix_arpack_vectors
Matthias Maier [Thu, 28 May 2015 14:00:32 +0000 (16:00 +0200)]
Merge pull request #759 from guidokanschat/fix_arpack_vectors

Fix Arpack solver eigenvectors

9 years agofix glitch with assemble_threshold, avoid division by zero 970/head
Guido Kanschat [Thu, 28 May 2015 12:58:36 +0000 (14:58 +0200)]
fix glitch with assemble_threshold, avoid division by zero

9 years agoRename two more header guards 969/head
Matthias Maier [Thu, 28 May 2015 12:04:20 +0000 (14:04 +0200)]
Rename two more header guards

9 years agoMerge pull request #967 from guidokanschat/fix_clear_in_relaxation_block
Wolfgang Bangerth [Thu, 28 May 2015 06:24:35 +0000 (02:24 -0400)]
Merge pull request #967 from guidokanschat/fix_clear_in_relaxation_block

RelaxationBlock::clear() did not clear additional_data; fixed now

9 years agoMerge pull request #966 from bangerth/fix-test-2
Guido Kanschat [Thu, 28 May 2015 05:50:05 +0000 (07:50 +0200)]
Merge pull request #966 from bangerth/fix-test-2

Fix a test output.

9 years agoRelaxationBlock::clear() did not clear additional_data; fixed now 967/head
Guido Kanschat [Thu, 28 May 2015 05:29:31 +0000 (07:29 +0200)]
RelaxationBlock::clear() did not clear additional_data; fixed now

9 years agoFix a test output. 966/head
Wolfgang Bangerth [Thu, 28 May 2015 04:08:22 +0000 (23:08 -0500)]
Fix a test output.

9 years agoMerge pull request #964 from bangerth/fix-test
Luca Heltai [Thu, 28 May 2015 00:01:36 +0000 (02:01 +0200)]
Merge pull request #964 from bangerth/fix-test

Fix a test.

9 years agoMerge pull request #961 from tamiko/refactor_block_linear_operator
Luca Heltai [Wed, 27 May 2015 23:58:03 +0000 (01:58 +0200)]
Merge pull request #961 from tamiko/refactor_block_linear_operator

Refactoring and a bug fix for LinearOperator

9 years agoFix a test. 964/head
Wolfgang Bangerth [Wed, 27 May 2015 23:49:15 +0000 (18:49 -0500)]
Fix a test.

The test calls acosh(0.5), but acosh is really only defined for arguments >=1.

9 years agoWrite a single-line statement in two lines 961/head
Matthias Maier [Wed, 27 May 2015 20:11:55 +0000 (22:11 +0200)]
Write a single-line statement in two lines

9 years agoReword a description for a workaround
Matthias Maier [Wed, 27 May 2015 20:07:23 +0000 (22:07 +0200)]
Reword a description for a workaround

9 years agoRefactoring III: Reintroduce block operations and tests
Matthias Maier [Wed, 27 May 2015 12:24:42 +0000 (14:24 +0200)]
Refactoring III: Reintroduce block operations and tests

This reintroduces all block operations in a new header
"block_linear_operator.h". Tests renamed accordingly.

9 years agoRefactoring II: Reintroduce PackagedOperation and related tests
Matthias Maier [Wed, 27 May 2015 12:23:37 +0000 (14:23 +0200)]
Refactoring II: Reintroduce PackagedOperation and related tests

This reintroduces PackagedOperation and related tests under a new header
file "packaged_operation.h". Tests renamed accordingly.

9 years agoRefactoring I: Remove PackagedOperation and block stuff
Matthias Maier [Wed, 27 May 2015 12:21:47 +0000 (14:21 +0200)]
Refactoring I: Remove PackagedOperation and block stuff

Remove all PackagedOperation related code and code for block structures
from linear_operator.h, remove corresponding tests and rename remaining
tests.

9 years agoWorkaround for a regression in <=gcc-4.7 with partial template default values
Matthias Maier [Wed, 27 May 2015 10:53:58 +0000 (12:53 +0200)]
Workaround for a regression in <=gcc-4.7 with partial template default values

9 years agoMerge pull request #962 from tamiko/rename_header_guards
Wolfgang Bangerth [Wed, 27 May 2015 15:54:45 +0000 (11:54 -0400)]
Merge pull request #962 from tamiko/rename_header_guards

Rename header guards from __deal2__ to dealii__

9 years agoRename header guards from __deal2__ to dealii__ 962/head
Matthias Maier [Wed, 27 May 2015 12:37:28 +0000 (14:37 +0200)]
Rename header guards from __deal2__ to dealii__

9 years agoMerge pull request #960 from ESeNonFossiIo/linear_operator_fix
Matthias Maier [Wed, 27 May 2015 10:17:21 +0000 (12:17 +0200)]
Merge pull request #960 from ESeNonFossiIo/linear_operator_fix

add template

9 years agoadd template 960/head
ESeNonFossiIo [Wed, 27 May 2015 09:58:52 +0000 (11:58 +0200)]
add template

9 years agoMerge pull request #957 from QiaoLei-88/fixDynamicSparsityPatternIterators
Wolfgang Bangerth [Wed, 27 May 2015 06:48:57 +0000 (02:48 -0400)]
Merge pull request #957 from QiaoLei-88/fixDynamicSparsityPatternIterators

fix undefined behavior DynamicSparsityPatternIterators::Accessor::operator <

9 years agoMerge pull request #959 from bangerth/silence-warnings
Martin Kronbichler [Wed, 27 May 2015 06:28:45 +0000 (08:28 +0200)]
Merge pull request #959 from bangerth/silence-warnings

Silence warnings about unused arguments.

9 years agoSilence warnings about unused arguments. 959/head
Wolfgang Bangerth [Wed, 27 May 2015 02:14:37 +0000 (21:14 -0500)]
Silence warnings about unused arguments.

Also explain why we don't need the argument.

9 years agofix undefined behavior DynamicSparsityPatternIterators::Accessor::operator < 957/head
Lei Qiao [Sat, 23 May 2015 22:47:57 +0000 (17:47 -0500)]
fix undefined behavior DynamicSparsityPatternIterators::Accessor::operator <

9 years agoMerge pull request #950 from ESeNonFossiIo/block_lin_op_inv
Luca Heltai [Sun, 24 May 2015 12:21:04 +0000 (14:21 +0200)]
Merge pull request #950 from ESeNonFossiIo/block_lin_op_inv

Block lin op inv

9 years agodocumentation 950/head
ESeNonFossiIo [Thu, 21 May 2015 07:27:24 +0000 (09:27 +0200)]
documentation

indentation and an assert

layout

a small error

documentation

small bugs + rebase

small change in the comment

notation

a small comment

renaming the function

a -> block_matrix

9 years agopreconditioner_from_diagonal_inverse
ESeNonFossiIo [Wed, 20 May 2015 16:52:01 +0000 (18:52 +0200)]
preconditioner_from_diagonal_inverse

preconditioner

inverse check added

9 years agoupper triangular block matrix
ESeNonFossiIo [Wed, 20 May 2015 13:36:44 +0000 (15:36 +0200)]
upper triangular block matrix

upper triangular block matrix tests

comments

crossed tests

small typos

9 years agolower triangular block matrix
ESeNonFossiIo [Wed, 20 May 2015 08:18:44 +0000 (10:18 +0200)]
lower triangular block matrix

lower triangular matrix tests

9 years agoMerge pull request #947 from msteigemann/branch_petsc_vector
Wolfgang Bangerth [Sat, 23 May 2015 05:12:03 +0000 (01:12 -0400)]
Merge pull request #947 from msteigemann/branch_petsc_vector

Add a clear function for PETSc serial and parallel vectors

9 years agoAdd a clear function for PETSc serial and parallel vectors 947/head
msteigemann [Thu, 21 May 2015 05:53:24 +0000 (07:53 +0200)]
Add a clear function for PETSc serial and parallel vectors

9 years agoMerge pull request #953 from bangerth/check-astyle-version
Matthias Maier [Fri, 22 May 2015 23:58:00 +0000 (01:58 +0200)]
Merge pull request #953 from bangerth/check-astyle-version

Check that we have the right astyle version.

9 years agoCheck that we have the right astyle version. 953/head
Wolfgang Bangerth [Fri, 22 May 2015 03:58:50 +0000 (22:58 -0500)]
Check that we have the right astyle version.

9 years agoMerge pull request #942 from mtezzele/hp_ref_bernstein
Wolfgang Bangerth [Thu, 21 May 2015 17:56:49 +0000 (13:56 -0400)]
Merge pull request #942 from mtezzele/hp_ref_bernstein

hp refinement for bernstein

9 years agohp refinement for bernstein 942/head
Marco Tezzele [Mon, 18 May 2015 09:19:12 +0000 (11:19 +0200)]
hp refinement for bernstein

9 years agoMerge pull request #949 from bangerth/fix-petsc-gla-test
Timo Heister [Thu, 21 May 2015 04:38:39 +0000 (00:38 -0400)]
Merge pull request #949 from bangerth/fix-petsc-gla-test

Rewrite test.

9 years agoRewrite test. 949/head
Wolfgang Bangerth [Thu, 21 May 2015 03:57:59 +0000 (22:57 -0500)]
Rewrite test.

The test uses PETScWrappers::Vector, but this class is now deprecated and indeed
produces an error now (because the respective include file has been removed
from the generic_linear_algebra.h include file.

9 years agoMerge pull request #943 from davydden/local_integrators
Wolfgang Bangerth [Thu, 21 May 2015 02:58:29 +0000 (22:58 -0400)]
Merge pull request #943 from davydden/local_integrators

exploit symmetries in Local integrators of mass and laplace matrices

9 years agoMerge pull request #945 from drwells/modify-stokes-diffusion
Martin Kronbichler [Wed, 20 May 2015 10:51:42 +0000 (12:51 +0200)]
Merge pull request #945 from drwells/modify-stokes-diffusion

Modify the default Stokes equation in step-22

9 years agoMerge pull request #944 from mtezzele/failing_mapfe
Luca Heltai [Wed, 20 May 2015 07:50:29 +0000 (09:50 +0200)]
Merge pull request #944 from mtezzele/failing_mapfe

Failing test for mapping_fe_field with fe_bernstein

9 years agoMerge pull request #946 from tamiko/fix_documentation
Luca Heltai [Tue, 19 May 2015 21:10:44 +0000 (23:10 +0200)]
Merge pull request #946 from tamiko/fix_documentation

Documentation: Update forgotten change in cmake.html about default locations

9 years agoDocumentation: Update forgotten change in cmake.html about default locations 946/head
Matthias Maier [Tue, 19 May 2015 20:17:53 +0000 (22:17 +0200)]
Documentation: Update forgotten change in cmake.html about default locations

9 years agoExplain the sparsity pattern changes in step-22. 945/head
David Wells [Tue, 19 May 2015 16:05:11 +0000 (12:05 -0400)]
Explain the sparsity pattern changes in step-22.
In particular, step-22 has used three different sparsity patterns at
different points.

9 years agoUpdate the step-22 benchmark as well.
David Wells [Tue, 19 May 2015 16:01:39 +0000 (12:01 -0400)]
Update the step-22 benchmark as well.

9 years agoUpdate the step-22 numerical results.
David Wells [Tue, 19 May 2015 15:45:19 +0000 (11:45 -0400)]
Update the step-22 numerical results.
The solution difference norms are significantly different because of the
additional factor of two. I recovered the original differences (up to
about 10%) by removing the factor.

9 years agoUse the standard Stokes equation in step-22.
David Wells [Tue, 19 May 2015 15:40:11 +0000 (11:40 -0400)]
Use the standard Stokes equation in step-22.
The usual formulation of the Cauchy stress tensor implies that there
should be a factor of two in front of the diffusion (divergence of
symmetric gradient) term.

9 years agoFix two (related) typos.
David Wells [Sat, 9 May 2015 20:57:10 +0000 (16:57 -0400)]
Fix two (related) typos.

9 years agofailing test for mapping_fe_field with fe_bernstein 944/head
Marco Tezzele [Tue, 19 May 2015 09:40:32 +0000 (11:40 +0200)]
failing test for mapping_fe_field with fe_bernstein

9 years agoexploit symmetries in Local integrators of mass and laplace matrices 943/head
Denis Davydov [Tue, 19 May 2015 05:31:36 +0000 (07:31 +0200)]
exploit symmetries in Local integrators of mass and laplace matrices

9 years agoMerge pull request #939 from QiaoLei-88/unusedFunction
Luca Heltai [Mon, 18 May 2015 21:26:36 +0000 (23:26 +0200)]
Merge pull request #939 from QiaoLei-88/unusedFunction

suppress warning unused function 'get_element'

9 years agoMerge pull request #935 from nicola-giuliani/fixed-fefield
Wolfgang Bangerth [Sun, 17 May 2015 20:57:45 +0000 (15:57 -0500)]
Merge pull request #935 from nicola-giuliani/fixed-fefield

Fixed issue with MappingFEField and build_patches

9 years agoMerge pull request #940 from bangerth/remove-ala_01-test
Luca Heltai [Sun, 17 May 2015 19:57:15 +0000 (21:57 +0200)]
Merge pull request #940 from bangerth/remove-ala_01-test

Remove the ala_01 test.

9 years agoRemove the ala_01 test. 940/head
Wolfgang Bangerth [Sun, 17 May 2015 18:22:15 +0000 (13:22 -0500)]
Remove the ala_01 test.

This tests checks the construction of generic sequential vectors.
It currently fails because the sequential PETSc and Trilinos
vectors were deprecated and their corresponding typedefs in
the dealii::LinearAlgebra* namespaces removed.

9 years agosuppress warning unused function 'get_element' 939/head
Lei Qiao [Sun, 17 May 2015 17:18:54 +0000 (12:18 -0500)]
suppress warning unused function 'get_element'

9 years agoMerge pull request #931 from QiaoLei-88/step33_revise
Luca Heltai [Sat, 16 May 2015 19:05:21 +0000 (21:05 +0200)]
Merge pull request #931 from QiaoLei-88/step33_revise

Step33 revise

9 years agoRestructured test for MappingFEField. 935/head
Luca Heltai [Sat, 16 May 2015 18:53:35 +0000 (20:53 +0200)]
Restructured test for MappingFEField.

9 years agoFixed names and typedefs.
Luca Heltai [Fri, 15 May 2015 20:36:22 +0000 (22:36 +0200)]
Fixed names and typedefs.

9 years agoadded the failing test for mappingfe
nicola giuliani [Fri, 15 May 2015 15:59:09 +0000 (17:59 +0200)]
added the failing test for mappingfe


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